mRNA_D-mesarthrocarpus_Contig10698.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10698.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10698.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10698.2.1 vs. uniprot
Match: D7FW89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW89_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.060e-16
Identity = 63/144 (43.75%), Postives = 88/144 (61.11%), Query Frame = 1 
Query:  265 MTLPPSSLLERLGAFLPEMAKANEEILSLSKSGKLEMLDANLVI--ADEEAD--ESSDDESEVDEXEPGDSQFDSKGTEEDKAEVVSAEGIQGTGQDKRVVQLEFALGDFNETPIAQMERPSGESARPQGSSTGAADGGLEKNQ 684
            M LPPSSLL RL AFLPEM KAN++   L++ GKLE+L        +D++ +  E +DDE+       GDS+ +    EE+  +V  A G+   G   R VQL+FALGDF++TPIA+ME+   E+AR  G     A GG+E+ +
Sbjct:    1 MNLPPSSLLGRLEAFLPEMEKANQKTEKLAQEGKLEVLXXXXXXXXSDKQTEGAEGTDDEA-------GDSEVEE---EEEGGQVEGAAGVVAAG---RTVQLDFALGDFDDTPIAKMEQEK-EAAREAGGVDAGATGGVEEEE 130
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BLAST of mRNA_D-mesarthrocarpus_Contig10698.2.1 vs. uniprot
Match: A0A836CNZ4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNZ4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.060e-11
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 1 
Query:  265 MTLPPSSLLERLGAFLPEMAKANEEILSLSKSGKLEMLDANLVIADEEADESSDDESEVDEXEPGDSQFDSKGTEEDKAEVVSAEGIQGTGQDKRVVQLEFALGDFNETPIAQME 609
            M LPPSSLL +L AFLP++A+AN ++   +  G+ E +DA+L +   +A + +D+ESE  + E GD           +A    A  +QG G   +VVQL FALGDF++TP+AQ E
Sbjct:    1 MELPPSSLLGKLEAFLPKLAQANRDLQQQTLEGQAETIDAHLAL---DAADGNDEESESSDGE-GDVAVAGASA---RAINEGAGDMQGGG---KVVQLSFALGDFDDTPVAQFE 105
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10698.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW89_ECTSI1.060e-1643.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CNZ4_9STRA7.060e-1142.61Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10698contigD-mesarthrocarpus_Contig10698:2374..3280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size747
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_003810.1
Cds size483
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789203.5723646-UTR-D-mesarthrocarpus_Contig10698:2373..26371680789203.5723646-UTR-D-mesarthrocarpus_Contig10698:2373..2637Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10698 2374..2637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789203.5863101-CDS-D-mesarthrocarpus_Contig10698:2637..29341680789203.5863101-CDS-D-mesarthrocarpus_Contig10698:2637..2934Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10698 2638..2934 +
1680789203.604288-CDS-D-mesarthrocarpus_Contig10698:3094..32801680789203.604288-CDS-D-mesarthrocarpus_Contig10698:3094..3280Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10698 3095..3280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10698.2.1prot_D-mesarthrocarpus_Contig10698.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10698 2638..3280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10698.2.1

>prot_D-mesarthrocarpus_Contig10698.2.1 ID=prot_D-mesarthrocarpus_Contig10698.2.1|Name=mRNA_D-mesarthrocarpus_Contig10698.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=161bp
MTLPPSSLLERLGAFLPEMAKANEEILSLSKSGKLEMLDANLVIADEEAD
ESSDDESEVDEDEPGDSQFDSKGTEEDKAEVVSAEGIQGTGQDKRVVQLE
FALGDFNETPIAQMERPSGESARPQGSSTGAADGGLEKNQEDEDDEEEGD
EASSGGKVVAR
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mRNA from alignment at D-mesarthrocarpus_Contig10698:2374..3280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10698.2.1 ID=mRNA_D-mesarthrocarpus_Contig10698.2.1|Name=mRNA_D-mesarthrocarpus_Contig10698.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=907bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10698:2374..3280+ (Discosporangium mesarthrocarpum MT17_79)
TGAGGTCCCCTGTAGATTGAAGTCTGGAAGAGATGGCCACGAACCATGAG
GGACACCAAGAGAAACGTCAGTGCCCATTGTCTCTTAACGTGGTTGTCAG
GCTCTGGATTCTAGCTGATATTGGACGATTTGACAAGAATCCTGGTTGCA
CTATACGGTGGTTTTTTGGTTTGATATCAACTTTTTCGTACTTCTCACCC
CTCGTCCTCCGAACGCCCATGTGTATTTTCAACGTCTCGGCCGACGAAAG
TTAACGCCGATGGGATGACTCTTCCCCCAAGCTCCCTGTTGGAGAGGCTG
GGCGCTTTTTTACCCGAGATGGCGAAGGCCAACGAGGAAATCCTGTCCCT
GTCCAAATCCGGAAAGCTGGAGATGCTGGATGCCAACTTAGTCATAGCCG
ACGAGGAAGCCGACGAGAGCAGCGACGACGAGAGTGAAGTGGACGAAGAT
GAGCCCGGAGACTCTCAATTTGACAGCAAAGGGACAGAAGAGGACAAAGC
GGAAGTAGTGTCAGCGGAGGGAATACAAGGGACGGGCCAGGACAAGCGGG
TAGTGCAGCTGGTGAGTGGTGTTGGTCCTTCAATGTTTTCTTTCTTCTTG
TATATATCGTAGATTCACCAGGGTCTCGCAGCGTCTGACCTACGTCCCTT
GCCGACCCCTTGGTCCCGTCTCCCTACCGGTGCAACATTGGCGATGATCT
TACCATGTCACCTGGCCCCAGGAGTTCGCTCTGGGAGACTTTAATGAAAC
GCCCATTGCCCAAATGGAAAGGCCATCGGGAGAAAGTGCGCGTCCACAGG
GATCCAGCACAGGAGCCGCAGATGGGGGATTAGAGAAGAACCAAGAAGAT
GAAGATGATGAGGAAGAAGGAGATGAGGCCAGTAGCGGAGGGAAGGTTGT
TGCACGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10698:2374..3280+

>mRNA_D-mesarthrocarpus_Contig10698.2.1 ID=mRNA_D-mesarthrocarpus_Contig10698.2.1|Name=mRNA_D-mesarthrocarpus_Contig10698.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=483bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10698:2374..3280+ (Discosporangium mesarthrocarpum MT17_79)
ATGACTCTTCCCCCAAGCTCCCTGTTGGAGAGGCTGGGCGCTTTTTTACC
CGAGATGGCGAAGGCCAACGAGGAAATCCTGTCCCTGTCCAAATCCGGAA
AGCTGGAGATGCTGGATGCCAACTTAGTCATAGCCGACGAGGAAGCCGAC
GAGAGCAGCGACGACGAGAGTGAAGTGGACGAAGATGAGCCCGGAGACTC
TCAATTTGACAGCAAAGGGACAGAAGAGGACAAAGCGGAAGTAGTGTCAG
CGGAGGGAATACAAGGGACGGGCCAGGACAAGCGGGTAGTGCAGCTGGAG
TTCGCTCTGGGAGACTTTAATGAAACGCCCATTGCCCAAATGGAAAGGCC
ATCGGGAGAAAGTGCGCGTCCACAGGGATCCAGCACAGGAGCCGCAGATG
GGGGATTAGAGAAGAACCAAGAAGATGAAGATGATGAGGAAGAAGGAGAT
GAGGCCAGTAGCGGAGGGAAGGTTGTTGCACGA
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