mRNA_D-mesarthrocarpus_Contig10689.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10689.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10689.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10689.1.1 vs. uniprot
Match: D7FR27_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR27_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 9.110e-10
Identity = 79/236 (33.47%), Postives = 117/236 (49.58%), Query Frame = 1 
Query:   22 MVSVTDVGLMIGPLIARELAKERTRTEEKFQAR-------------RLA-------------QAVQKLREEIQHIDGEGLMARVALEKRVNIGLRALMERFEALEVRYAQLEMEAQEERE-EEANLGTIEGKGTTPTTANPLLEQQRGSTSLGAGTGRGLGSFRDSAAGGLEVRSPLGGEGVGGGAPAAAAAVERSLKRGCKEEDERDEVEDDMIRRLEEKMSALEGKLKGHEERQ 648
            +V+V D   M+ PL+A+E+ KE  + E + Q R             RLA              A++ +R E++ ID EGLMARVA+EKR+  G++ L+ER + LE R+++LE E ++    E A++                +  +  S S  + T   L +  + A    E R  +   G  G   +AA +   S   G   E   D+ E D++R LEEKM+ALEGKL GHEERQ
Sbjct:  702 LVTVEDASRMLAPLVAQEVEKETKKIEIRMQRRVPSSVVCAAAKRVRLALLKHLGAWQNEMNSALRTMRSEMEAIDREGLMARVAMEKRLKTGIKRLLERIDHLERRFSKLEREDRKRLALEAASVAAXXXXXXXXXGGAADVVVRLQSPSSASETSAAL-NKSNRAPDTPEARPLVTWSGGDGDFSSAAGSTAASSCDGEYSE-AGDDTEADIVRMLEEKMAALEGKLLGHEERQ 935
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10689.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR27_ECTSI9.110e-1033.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10689contigD-mesarthrocarpus_Contig10689:265..1862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FR27
PFAMsLRR_6
Model size1153
Max annot lvl2759|Eukaryota
KEGG koko:K17576
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.96e-11
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size771
COG categoryS
BRITEko00000,ko01009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789203.0461094-UTR-D-mesarthrocarpus_Contig10689:264..5281680789203.0461094-UTR-D-mesarthrocarpus_Contig10689:264..528Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10689 265..528 -
1680789203.0575967-UTR-D-mesarthrocarpus_Contig10689:562..6591680789203.0575967-UTR-D-mesarthrocarpus_Contig10689:562..659Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10689 563..659 -
1680789203.0966961-UTR-D-mesarthrocarpus_Contig10689:1841..18621680789203.0966961-UTR-D-mesarthrocarpus_Contig10689:1841..1862Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10689 1842..1862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789203.0708334-CDS-D-mesarthrocarpus_Contig10689:659..13281680789203.0708334-CDS-D-mesarthrocarpus_Contig10689:659..1328Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10689 660..1328 -
1680789203.0836298-CDS-D-mesarthrocarpus_Contig10689:1739..18411680789203.0836298-CDS-D-mesarthrocarpus_Contig10689:1739..1841Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10689 1740..1841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10689.1.1prot_D-mesarthrocarpus_Contig10689.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10689 660..1841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10689.1.1

>prot_D-mesarthrocarpus_Contig10689.1.1 ID=prot_D-mesarthrocarpus_Contig10689.1.1|Name=mRNA_D-mesarthrocarpus_Contig10689.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=257bp
MVSVTDVGLMIGPLIARELAKERTRTEEKFQARRLAQAVQKLREEIQHID
GEGLMARVALEKRVNIGLRALMERFEALEVRYAQLEMEAQEEREEEANLG
TIEGKGTTPTTANPLLEQQRGSTSLGAGTGRGLGSFRDSAAGGLEVRSPL
GGEGVGGGAPAAAAAVERSLKRGCKEEDERDEVEDDMIRRLEEKMSALEG
KLKGHEERQMYSRNKHSKAKKIEKIEKQALVVGGEGSKPGMGRADIQSEG
VAPMVG*
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mRNA from alignment at D-mesarthrocarpus_Contig10689:265..1862-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10689.1.1 ID=mRNA_D-mesarthrocarpus_Contig10689.1.1|Name=mRNA_D-mesarthrocarpus_Contig10689.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1598bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10689:265..1862- (Discosporangium mesarthrocarpum MT17_79)
GGACGAGGGGGGGCTGAGGAGATGGTGAGTGTGACGGATGTGGGGCTGAT
GATTGGGCCACTGATTGCCCGTGAGTTGGCCAAGGAGAGGACCAGGACGG
AGGAGAAGTTCCAGGCGAGGAGGGTGACATTTGTCTCTTGTGTTTCCATG
TTGTCGATTCCCCCTAACCCTTTTCCTAACCCTATCCCTAACCTCACACA
TTACTATGGAGTACAAAGTCGTGGAGCCATTGTAACTGTACATACAGGAA
GTCGTGGTTCTTATGAGTGCTTTGAAGCAGCATTTGATATATGAAAAACT
ATTTTAGAACGTTTTGCCTCTCTCTTCTTCTACTGCCTATTTCTGCCAAT
CTCGGCCAGTTTCACTGTCAGTTTATCGCAATAATGTCACTATATCTGTC
ACTGACAGAGATTCACCCCTCAACGGTGGCATTTAACAAAAAAGCAGCAC
TCCAAGACAATCTGGAGCCCTTTTCCGTACGCTGGTCAGGACAACCCCTT
GCCTTACCTCATCTTACCCTAAACTCAGGGGGAGCTGGCCCAGGCGGTGC
AAAAGCTGAGGGAGGAAATCCAGCACATAGATGGGGAGGGTCTCATGGCA
CGGGTGGCACTGGAGAAGCGTGTGAACATCGGTCTCAGAGCCCTCATGGA
GCGCTTCGAAGCCCTTGAGGTTAGGTATGCACAGCTGGAAATGGAAGCTC
AGGAGGAAAGGGAGGAAGAAGCCAACTTGGGCACCATTGAGGGGAAAGGA
ACCACTCCGACCACGGCAAACCCCCTCTTGGAGCAGCAGAGGGGGAGCAC
TAGTTTGGGTGCTGGCACAGGGAGGGGTCTGGGAAGTTTCAGGGACTCAG
CTGCTGGGGGTCTTGAGGTGCGGAGCCCCCTGGGAGGGGAAGGGGTCGGG
GGAGGGGCGCCAGCGGCAGCAGCAGCAGTGGAGAGATCATTGAAGAGGGG
CTGCAAGGAGGAAGATGAGAGGGATGAGGTGGAGGACGACATGATCAGGC
GTTTGGAGGAGAAGATGTCTGCCCTGGAGGGGAAGCTGAAAGGGCATGAG
GAGAGGCAGATGTACTCCAGGAACAAACATTCAAAAGCTAAGAAGATAGA
GAAAATCGAAAAGCAGGCACTCGTTGTGGGTGGAGAGGGGAGCAAACCTG
GCATGGGAAGGGCTGACATCCAATCTGAGGGAGTGGCCCCTATGGTGGGG
TAGGGGTTAATGCAGGCCCTGAGCCTAACCCTTAGTCACTTCTAACCAAC
TTCTCAATCAGGAGTGCAGTGTCTGGTGCCCAGGAATGGGCTTGCGTGTG
GCCAAGTTGTCAGGGATAGGCTGTGACACTCCAGGTCAAGGGGACTGGGA
ACTGTAGATCTTGCCAGAAGCAAGAGGCTGAGGATGTGCCGCAGATGTCC
TATAGTTTCCTGCAGTGTTACGTGGCAACACTGTAGGTGGATTAGTGTTA
AGGATTAGTGTTAGCTCAATAGAGTCCATGGCTTGAATGTATCTTTTCTG
TTTCGCAAAATGTTGAGCCTAACCCTAACCCTAACCCTTAGCATGGCTGC
TCCGACTCTACCTTTATTGGAAGGGAAAAGAGTGCTTTTTTTTTTTTT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10689:265..1862-

>mRNA_D-mesarthrocarpus_Contig10689.1.1 ID=mRNA_D-mesarthrocarpus_Contig10689.1.1|Name=mRNA_D-mesarthrocarpus_Contig10689.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=771bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10689:265..1862- (Discosporangium mesarthrocarpum MT17_79)
ATGGTGAGTGTGACGGATGTGGGGCTGATGATTGGGCCACTGATTGCCCG
TGAGTTGGCCAAGGAGAGGACCAGGACGGAGGAGAAGTTCCAGGCGAGGA
GGCTGGCCCAGGCGGTGCAAAAGCTGAGGGAGGAAATCCAGCACATAGAT
GGGGAGGGTCTCATGGCACGGGTGGCACTGGAGAAGCGTGTGAACATCGG
TCTCAGAGCCCTCATGGAGCGCTTCGAAGCCCTTGAGGTTAGGTATGCAC
AGCTGGAAATGGAAGCTCAGGAGGAAAGGGAGGAAGAAGCCAACTTGGGC
ACCATTGAGGGGAAAGGAACCACTCCGACCACGGCAAACCCCCTCTTGGA
GCAGCAGAGGGGGAGCACTAGTTTGGGTGCTGGCACAGGGAGGGGTCTGG
GAAGTTTCAGGGACTCAGCTGCTGGGGGTCTTGAGGTGCGGAGCCCCCTG
GGAGGGGAAGGGGTCGGGGGAGGGGCGCCAGCGGCAGCAGCAGCAGTGGA
GAGATCATTGAAGAGGGGCTGCAAGGAGGAAGATGAGAGGGATGAGGTGG
AGGACGACATGATCAGGCGTTTGGAGGAGAAGATGTCTGCCCTGGAGGGG
AAGCTGAAAGGGCATGAGGAGAGGCAGATGTACTCCAGGAACAAACATTC
AAAAGCTAAGAAGATAGAGAAAATCGAAAAGCAGGCACTCGTTGTGGGTG
GAGAGGGGAGCAAACCTGGCATGGGAAGGGCTGACATCCAATCTGAGGGA
GTGGCCCCTATGGTGGGGTAG
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