mRNA_D-mesarthrocarpus_Contig10687.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10687.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10687.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10687.1.1 vs. uniprot
Match: A0A6H5KH94_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH94_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.260e-24
Identity = 59/141 (41.84%), Postives = 87/141 (61.70%), Query Frame = 1 
Query:  574 SPPTRAYSEH*NKAHLFLCWSSFPCVQGDKEPIKPVKKGGGHCKEDSDCHLGTCKWNKRCSCPEGWVGPKCMSQDKFDDVTYEKHMDISVQLFKVPVALQVMGGGLLMFLAVASIVLGRKISLNKEKYYMELANSPTPIAG 996
            S P++ + E    AH +    S     GDK+P+K +  GGG C +++ CH G C W K C C EGWVGP C S  KFDD++YE+H+D+S +   VPV LQ +GG +++ +   S VLGR++S  K +Y  +L  + +P+AG
Sbjct:  507 SHPSKLFIE----AHRYRYMRS-----GDKKPLKDLMVGGGKCNDETGCHRGKCHWGK-CKCEEGWVGPLCQSTHKFDDISYEEHVDLSPRPIAVPVVLQAIGGVIVLLVLGMSFVLGRQLSKTKGQYREDLLRNASPLAG 637
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BLAST of mRNA_D-mesarthrocarpus_Contig10687.1.1 vs. uniprot
Match: B8BWU1_THAPS (GH16 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWU1_THAPS)

HSP 1 Score: 65.1 bits (157), Expect = 3.740e-7
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:  649 VQGDKEPIKPVKKGGGHCKEDSDCHL---GTCKWNKRCSCPEGWVGPKCMSQDKFDDVT 816
            + G KEP+  +++GGG+C+ + DC     G C  NKRC+C + + GPKC+S   FDD +
Sbjct:  472 IDGQKEPLLAIQRGGGYCETNEDCGYPTKGECSGNKRCACQDNFTGPKCLSHAGFDDTS 530
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10687.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KH94_9PHAE2.260e-2441.84GH16 domain-containing protein n=2 Tax=Ectocarpus ... [more]
B8BWU1_THAPS3.740e-742.37GH16 domain-containing protein n=1 Tax=Thalassiosi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10687contigD-mesarthrocarpus_Contig10687:478..4115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LC98
PFAMsSKN1
Model size2242
Max annot lvl2759|Eukaryota
KEGG koko:K21850
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.15e-08
EggNOG OGsCOG2273@1|root,2QVQE@2759|Eukaryota
DescriptionBeta-glucan synthesis-associated protein (SKN1)
Cds size219
COG categoryG
CAZyGH16
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10687.1.1prot_D-mesarthrocarpus_Contig10687.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10687 1715..2952 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789202.9492352-UTR-D-mesarthrocarpus_Contig10687:477..17141680789202.9492352-UTR-D-mesarthrocarpus_Contig10687:477..1714Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10687 478..1714 -
1680789202.9978654-UTR-D-mesarthrocarpus_Contig10687:2952..30121680789202.9978654-UTR-D-mesarthrocarpus_Contig10687:2952..3012Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10687 2953..3012 -
1680789203.008047-UTR-D-mesarthrocarpus_Contig10687:3389..41151680789203.008047-UTR-D-mesarthrocarpus_Contig10687:3389..4115Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10687 3390..4115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789202.9607992-CDS-D-mesarthrocarpus_Contig10687:1714..17531680789202.9607992-CDS-D-mesarthrocarpus_Contig10687:1714..1753Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10687 1715..1753 -
1680789202.9744818-CDS-D-mesarthrocarpus_Contig10687:2277..24151680789202.9744818-CDS-D-mesarthrocarpus_Contig10687:2277..2415Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10687 2278..2415 -
1680789202.9849806-CDS-D-mesarthrocarpus_Contig10687:2910..29521680789202.9849806-CDS-D-mesarthrocarpus_Contig10687:2910..2952Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10687 2911..2952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10687.1.1

>prot_D-mesarthrocarpus_Contig10687.1.1 ID=prot_D-mesarthrocarpus_Contig10687.1.1|Name=mRNA_D-mesarthrocarpus_Contig10687.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=73bp
MSQDKFDDVTYEKHMDISVQLFKVPVALQVMGGGLLMFLAVASIVLGRKI
SLNKEKYYMELANSPTPIAGAT*
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mRNA from alignment at D-mesarthrocarpus_Contig10687:478..4115-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10687.1.1 ID=mRNA_D-mesarthrocarpus_Contig10687.1.1|Name=mRNA_D-mesarthrocarpus_Contig10687.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3638bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10687:478..4115- (Discosporangium mesarthrocarpum MT17_79)
TGCTGTAATCCCTGCAGAAAGTTTCTTCGGAGGCTTCTCTACCGTATAAT
TTTTTGCCGGGGAGTAGCGCTTGCGCTCTCCCAAAACCGAACCCCCTAAC
CCGAAGGACACACCAGTCTCAAATACATACTCCTTACTACCGCACATGAC
CAAATCGTTCCAACCCCCGACCACCAGCGCTAGTCCCCCGTGGTCTATCT
AAACTCGTGCAATGCCATTACGGTATGTCCTCAGGCTTTTGAGCTCAGTT
GCTCAATGTGAAGGATGAAATGGGGTGATGTAGCAGGTTTTTGTGGTTTA
ACTGTGATGGTGGAGGTTGGTTAGAAAAGACCCCAACCTATGAGGAAGGC
AAAGAATGGAGGACAGTTGTGAAGTAGTAGACACTCTACTTTTATGTCCA
AACCTAGGAGTGGTACTTCAAGTAATTGTATGGGTAAGAGCTGTACAGTA
GGGAGCCTGGCTTGCCCTGCCATTGACCCCTATTAGCTGTCACGCATCAA
CCCTCGTCCCCCTTTGTGCGCTATGTGCTGCAGACCACTTTATACTACAG
AAGTATGTGCCGTTGTCTGTTTTTCCCCACCAACTCGCGCTTACTCTGAA
CACTAGAATAAAGCACACCTATTTCTTTGCTGGTCCTCCTTCCCGTGTGT
CCAGGGGGACAAGGAACCGATAAAACCTGTCAAAAAGGGGGGGGGGCACT
GCAAGGAGGACTCAGACTGCCATCTGGTGTGTGAGAGCATGAAAGCCTTG
TTAGTTTATAGGCCGTGTTCCACAGGGTTTTTGATGAGTGTGCTTTTGGA
ACTAGCTCCACTGCTAGTGGATGTAACCACGTTAATTTGAAGTGACTGGT
GCTTTGTTCTTAGGCACATCACGTCCACCTCTATGCACATAGGGCAAGGT
ACTGTACATGCATCTCCTCACTGGCCATAGTCTCCTACTGTGGTGGTAGT
AGTACCACCGTCCAACCCTAACCCGATGCTAACCCGTAAGGCCCCGTTCA
TTAACTCTTCAACCAGTTCATCCTTGCATGATTCAGTGATCCACATGATG
AACCCCCCCCCCAATGCTGTCGTTCTGTTCGTCCATGCTCTCTGGGCATT
CAGGGAACCTGCAAGTGGAACAAGCGGTGCAGTTGCCCAGAGGGCTGGGT
GGGGCCAAAGTGCATGTCACAGGATAAGTTTGACGACGTGACCTACGAGA
AGCATGTGAGGAAAAAAAAAATGAAAAAGAATGGAGGGAGCGAGGGAGGG
AAGGAGGGAGGGGGGTGGGGGGAACGTGGTGGGTTATGTATATAAGGTAG
TGTGTTCCGTGCTTTCCAGGAGTCGGTGTTGGATCGCCAACCTGGAAAAA
GTCTTTACGGTGCCCTTCCCGAGGGTTTCTTCCTTGTGTGGCAGAGTTCA
GCGTCGGTCCTATCTCCAGGGACATACCGACGCTCCTGTCTCCAGGGACA
TGGATGCCTGGTGCAGAAGCACTACACCGCAGTCTTCCTGTTTACAGAAC
ACACTGGAGAGAGGCGTGACCGACCACGCGGGCTTTTTGCCAAGCCATGA
CTGTTTGCACGCCTTGTGGGTGATCTCCTCTCTCTCTCACTCTGCCCATG
GTACAAGCCCGAGCTATTTCCTCATATCCTCTTCCTCTGCCCACCCACCC
ACGTTCCCCCGTTATGATGATGCTTCTTTGCACGGCCATGAATGCTGCAG
ATGGATATCTCAGTGCAACTCTTCAAGGTCCCAGTGGCTTTGCAGGTCAT
GGGAGGAGGGTTGTTGATGTTTTTAGCTGTGGCTTCCATTGTCCTCGGAA
GGAAAATCAGCCTAAACAAGGAGAAATACTACATGGAGGTGAGGGAATGC
AGCACAAGGTCTGGTCACCCTTGACAGTCCAGGGGAGCTTCACTGCTCTC
TAGCCAGCTCGAGCATATCAGCATGAGCTCCTGGTGGGGTATTTTTTTGT
GGAGGCCAGGTTACAGCATGGTCTTAGTGTACTCTTGCCTTCGGTGACAT
TTTGATTCCTTTACTTGGTGTGGCTTAAGAGTGAAAATTCAGGGAGGGTG
GGGTTGTGTGCCTTTTTATCAATCGAGCGATCCACGAAGAAGAAAAGAGA
AGAGGGTATTGACTCTCTTCTAGCTTTGTGGTGGTGTCTTGCTCTCCCCT
TCTGAGCACAGGAAAGCTAATGTTGGCATTCTGTCCACTGCCACAGACCT
ATGGCCATACTAACTGCAATCGAACTTCTGCTAACTAAAAATGCATCTCA
CCCCCCCGCACACACCCCACCCCCCTTTACCCAAGCCCACTCCACATCCT
CCTTGAAATAACATACCCCTTCCTTACACCGTGTGCCACTTCTCACCATG
TGAACTTGTTAGCTGGCGAACTCTCCTACACCCATCGCAGGGGCAACATA
AGTAAAGAGTTACAGGGGATGATCCGCGGCTTGCCGATGCTCACCCTATG
TTCCCTCATGGATTCTGCCTAGTTTACTAGCACTCTCATGCTCCTGACTT
GTGGGGCTCAGGAGGCAGGAAGGGAGGGAGGAGCAAAGCCCATATGGGGG
GAACTCAGATGGTGACATGGGGGGTGTGATAGATACCCCCTGGTGTGTAG
CAGAAGAACATAGGCACATACTGGCAGGGTAGATGGCCGGGTTTGAATGG
GGCAGTTTGGATGCATGTGTTTATTACAGAGGTGAGGCAAGGTCACAGGG
CAGCAGCACAATGGACAATGATAACTTAGCATTTTGGCGGCAAGGAGAGC
AATATGGGCCATGGTGGAACTTGAGGCTGGTCTATAGACAAGCACACCCA
TGATTATGGCAGCCAAAGAGGCTGGGGAAGTGGGCGTTTCAATGGCAATC
ATGCCTTTGAAGTGGCAGGTTCGGAAAGAGAGGTTGAGACCACGGAAAGC
CAGGGGGGGAAGGGGAATCAGAGTCATCAAGGAGGAGCTGCGTCATTGAA
GCTTCGGGACCATCCTGGCTGCTGGAGGGAAAAAGAGACGGCTCTCAGAG
CTGCGTCCTTTGTCAGTGCATTGCTATGGCTCCATTCCACTTTGGTGCGC
ACATGCGTATGTAACCTCCTACGTGCGCAGGTCGAAGTACTTTAACGCAG
GTCTGGCTCTGCTCATCCCACCGTGTTTGTGGGGCAGATGATGCTGGGAT
CTTGTTCCCAGGCAGCATGCGTGGAACTGTATGGCACAAACCCTCCTCCT
GCCCTTCTAGGCATGTTTCTGGGCATCTCTCCCTGGTCATATCCGTCCGA
TTCCTGGGTCCCTCCTTTCTTCCTTAGCCTATAGTCTGTGGCGCAAGGCC
ATTCAGAGTGAATGCTTTTGCCGCCCATGTGGCCCTTGTCTGGCGAGTTC
CACCTGTCTAGAGACCCTGCCCACCCGTCATGCCTTATTTGGACATGCGA
GAACGCATGGTGCCACAGAGCTGTCTCTTGCAGTCTGTGATCATCTTACA
ACTTGTACCAATGCACTTCGGAGGTGGGCTCTTGTGCAGTACATTGAGTT
TGGGGTGTTTAATTCCCCCTGGATGACGTGAGTCAATGTACTCTGCTGTG
TTGTTCTCCTGTCATAAGTTATTTTAGCCATCTGCCTGTCTTTTGTCCTT
TTTGTATCGTTTGTATGGTGGGTAGAAGGTAGCTCTTC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10687:478..4115-

>mRNA_D-mesarthrocarpus_Contig10687.1.1 ID=mRNA_D-mesarthrocarpus_Contig10687.1.1|Name=mRNA_D-mesarthrocarpus_Contig10687.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=219bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10687:478..4115- (Discosporangium mesarthrocarpum MT17_79)
ATGTCACAGGATAAGTTTGACGACGTGACCTACGAGAAGCATATGGATAT
CTCAGTGCAACTCTTCAAGGTCCCAGTGGCTTTGCAGGTCATGGGAGGAG
GGTTGTTGATGTTTTTAGCTGTGGCTTCCATTGTCCTCGGAAGGAAAATC
AGCCTAAACAAGGAGAAATACTACATGGAGCTGGCGAACTCTCCTACACC
CATCGCAGGGGCAACATAA
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