mRNA_D-mesarthrocarpus_Contig10678.5.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10678.5.1
Unique NamemRNA_D-mesarthrocarpus_Contig10678.5.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10678.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10678contigD-mesarthrocarpus_Contig10678:3326..3694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size371
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789202.3958063-UTR-D-mesarthrocarpus_Contig10678:3325..33401680789202.3958063-UTR-D-mesarthrocarpus_Contig10678:3325..3340Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10678 3326..3340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789202.4120586-CDS-D-mesarthrocarpus_Contig10678:3340..36941680789202.4120586-CDS-D-mesarthrocarpus_Contig10678:3340..3694Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10678 3341..3694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10678.5.1prot_D-mesarthrocarpus_Contig10678.5.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10678 3341..3694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10678.5.1

>prot_D-mesarthrocarpus_Contig10678.5.1 ID=prot_D-mesarthrocarpus_Contig10678.5.1|Name=mRNA_D-mesarthrocarpus_Contig10678.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=118bp
MQDRSPATSHASSTIGNANPQRPGGKGGSSSWGGARAWAGTAASGSGASW
AKVPLPREQQGSGRGDLDLGALQDVSHIVTAVREGSSTVSGEQSASRRED
QTRARTRARVEQGSLGRG
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mRNA from alignment at D-mesarthrocarpus_Contig10678:3326..3694+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10678.5.1 ID=mRNA_D-mesarthrocarpus_Contig10678.5.1|Name=mRNA_D-mesarthrocarpus_Contig10678.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=369bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10678:3326..3694+ (Discosporangium mesarthrocarpum MT17_79)
CCAAGGCTCAAACACATGCAAGACCGTTCCCCGGCCACAAGCCATGCCTC
CTCTACCATTGGGAATGCCAACCCTCAACGCCCTGGGGGGAAGGGGGGGT
CGTCATCATGGGGAGGGGCGAGGGCATGGGCAGGGACAGCCGCCTCAGGG
TCAGGGGCATCGTGGGCCAAAGTGCCGTTGCCAAGAGAGCAGCAGGGGAG
TGGGCGAGGTGACCTTGACCTCGGTGCATTGCAAGATGTGAGCCATATTG
TCACCGCAGTGAGGGAGGGCAGCAGCACCGTCAGCGGTGAACAGTCAGCA
TCCAGAAGGGAGGACCAGACCAGGGCCAGGACCAGGGCCAGGGTCGAACA
AGGGTCTCTGGGGCGCGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10678:3326..3694+

>mRNA_D-mesarthrocarpus_Contig10678.5.1 ID=mRNA_D-mesarthrocarpus_Contig10678.5.1|Name=mRNA_D-mesarthrocarpus_Contig10678.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=354bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10678:3326..3694+ (Discosporangium mesarthrocarpum MT17_79)
ATGCAAGACCGTTCCCCGGCCACAAGCCATGCCTCCTCTACCATTGGGAA
TGCCAACCCTCAACGCCCTGGGGGGAAGGGGGGGTCGTCATCATGGGGAG
GGGCGAGGGCATGGGCAGGGACAGCCGCCTCAGGGTCAGGGGCATCGTGG
GCCAAAGTGCCGTTGCCAAGAGAGCAGCAGGGGAGTGGGCGAGGTGACCT
TGACCTCGGTGCATTGCAAGATGTGAGCCATATTGTCACCGCAGTGAGGG
AGGGCAGCAGCACCGTCAGCGGTGAACAGTCAGCATCCAGAAGGGAGGAC
CAGACCAGGGCCAGGACCAGGGCCAGGGTCGAACAAGGGTCTCTGGGGCG
CGGG
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