mRNA_D-mesarthrocarpus_Contig10666.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10666.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10666.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10666.2.1 vs. uniprot
Match: A0A3D2BYT5_9PROT (Hsp20 family protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BYT5_9PROT)

HSP 1 Score: 238 bits (606), Expect = 2.680e-78
Identity = 120/153 (78.43%), Postives = 136/153 (88.89%), Query Frame = 1
Query:    1 MRTFDFSPLYRSAVGFDRMTSLLDAAQKNTTVDSYPPYNIVKTGEDAYQISVAVAGFGSQDLDVEVRDGQLVVIGKGASESDEDVNFLHRGIARRAFERRFQLADHVEVKAADLKDGLLVIDLVREIPEAMKPRKIEIQAATTVIEDQTAQAA 459
            MRTFDFSPLYRSAVGFDR+ ++LDAAQKN   D YPPYNI KT ED+YQI++AVAGFGS DLDVEVRDGQLV++GKG SE ++D  FLHRGIARRAFERRFQLADHVEVKAADL DGLL +DLVREIPEAMKPRKI+I+   T+IEDQ+A+AA
Sbjct:    1 MRTFDFSPLYRSAVGFDRLMNVLDAAQKNGAADGYPPYNIEKTSEDSYQITLAVAGFGSADLDVEVRDGQLVIVGKGDSE-EQDNQFLHRGIARRAFERRFQLADHVEVKAADLVDGLLKVDLVREIPEAMKPRKIDIRTGGTIIEDQSAKAA 152          
BLAST of mRNA_D-mesarthrocarpus_Contig10666.2.1 vs. uniprot
Match: A0A2D8G2K7_9PROT (SHSP domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G2K7_9PROT)

HSP 1 Score: 224 bits (572), Expect = 4.050e-73
Identity = 114/153 (74.51%), Postives = 132/153 (86.27%), Query Frame = 1
Query:    1 MRTFDFSPLYRSAVGFDRMTSLLDAAQKNTTVDSYPPYNIVKTGEDAYQISVAVAGFGSQDLDVEVRDGQLVVIGKGASESDEDVNFLHRGIARRAFERRFQLADHVEVKAADLKDGLLVIDLVREIPEAMKPRKIEIQAATTVIEDQTAQAA 459
            MRT DFSPLYRSAVGFDR+ ++LDAAQKN   DSYPPYNI K GED YQI+VAVAGF S DLDVEVRDGQL+++GKG +  ++D +FLHRGIARRAFERRFQLADHVEVKAAD  DGLL + L+REIPEAMKPRKI IQ++ TVIE +T++AA
Sbjct:    1 MRTXDFSPLYRSAVGFDRLMTVLDAAQKNGGADSYPPYNIEKIGEDVYQITVAVAGFSSADLDVEVRDGQLLIVGKGXT-XEQDNHFLHRGIARRAFERRFQLADHVEVKAADXADGLLRVXLIREIPEAMKPRKIRIQSSKTVIEGETSRAA 152          
BLAST of mRNA_D-mesarthrocarpus_Contig10666.2.1 vs. uniprot
Match: A0A2S6Q8I0_9PROT (Small heat shock protein IbpA n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q8I0_9PROT)

HSP 1 Score: 213 bits (543), Expect = 1.060e-68
Identity = 105/153 (68.63%), Postives = 132/153 (86.27%), Query Frame = 1
Query:    1 MRTFDFSPLYRSAVGFDRMTSLLDAAQKNTTVDSYPPYNIVKTGEDAYQISVAVAGFGSQDLDVEVRDGQLVVIGKGASESDEDVNFLHRGIARRAFERRFQLADHVEVKAADLKDGLLVIDLVREIPEAMKPRKIEIQAATTVIEDQTAQAA 459
            MRTFDFSPLYRSAVGFDR+ ++LDAAQK+   DSYPPYNI K  +D+Y+I++AVAGF + DL++EVR+GQLV++GKG SE   + +FLHRGIARRAFER FQLADHV+V +A+L DGLL IDLVREIPEA+KP+KIEI++  T+I+DQ A+AA
Sbjct:    1 MRTFDFSPLYRSAVGFDRLMNVLDAAQKSGPADSYPPYNIEKIDDDSYRITIAVAGFSATDLELEVREGQLVIVGKGGSERQNN-HFLHRGIARRAFERHFQLADHVDVTSAELADGLLQIDLVREIPEALKPQKIEIKSVRTIIDDQNAKAA 152          
BLAST of mRNA_D-mesarthrocarpus_Contig10666.2.1 vs. uniprot
Match: A0A6P1T6B9_9RHOB (Hsp20 family protein n=1 Tax=Rhodobacteraceae bacterium 9Alg 56 TaxID=2683284 RepID=A0A6P1T6B9_9RHOB)

HSP 1 Score: 181 bits (459), Expect = 6.620e-56
Identity = 92/154 (59.74%), Postives = 118/154 (76.62%), Query Frame = 1
Query:    1 MRTFDFSPLYRSAVGFDRMTSLLDAAQKN-TTVDSYPPYNIVKTGEDAYQISVAVAGFGSQDLDVEVRDGQLVVIGKGASESDEDVNFLHRGIARRAFERRFQLADHVEVKAADLKDGLLVIDLVREIPEAMKPRKIEIQAATT-VIEDQTAQA 456
            MRT+DF+PLYRS VGFDR+  +LD    N  T  SYPPYNI KTGE+AY+I+VAVAGF   +L++E RDGQLV+ GK A+E D++ N+LHRGIA RAFERRFQLADHV    A  ++GLL +DLVRE+PEA+KPR+I I++ +   +E +T  A
Sbjct:    1 MRTYDFTPLYRSTVGFDRLAGMLDQVLTNENTGQSYPPYNIEKTGENAYRITVAVAGFSEDELNIEARDGQLVISGKKAAE-DKEANYLHRGIATRAFERRFQLADHVRATGAKTENGLLHVDLVREVPEALKPRRIAIESGSQKAVESETVDA 153          
BLAST of mRNA_D-mesarthrocarpus_Contig10666.2.1 vs. uniprot
Match: A0A2A5F533_9RHOB (Heat-shock protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A2A5F533_9RHOB)

HSP 1 Score: 181 bits (458), Expect = 8.530e-56
Identity = 92/145 (63.45%), Postives = 113/145 (77.93%), Query Frame = 1
Query:    1 MRTFDFSPLYRSAVGFDRMTSLLDAAQKNTTVDS-YPPYNIVKTGEDAYQISVAVAGFGSQDLDVEVRDGQLVVIGKGASESDEDVNFLHRGIARRAFERRFQLADHVEVKAADLKDGLLVIDLVREIPEAMKPRKIEIQAATTV 432
            MRT+D SPLYRS VGFDR+ S++D+ +   +  S YPPYNI K GEDAY+IS+AVAGF   DL +E RDGQLV+ GK  +E +E+VN+LHRGIA RAFE+RFQLADHV    A  ++GLL +DLVRE+PEA+KPRKIEI AA  V
Sbjct:    1 MRTYDLSPLYRSTVGFDRLASIMDSVKSTDSSQSGYPPYNIEKIGEDAYRISIAVAGFTDADLTIEARDGQLVISGKKVTE-EEEVNYLHRGIATRAFEKRFQLADHVRALGATTENGLLHVDLVREVPEALKPRKIEIVAAGQV 144          
BLAST of mRNA_D-mesarthrocarpus_Contig10666.2.1 vs. uniprot
Match: A0A840SRP8_9RHOB (Molecular chaperone IbpA n=1 Tax=Amaricoccus macauensis TaxID=57001 RepID=A0A840SRP8_9RHOB)

HSP 1 Score: 180 bits (457), Expect = 1.420e-55
Identity = 97/153 (63.40%), Postives = 118/153 (77.12%), Query Frame = 1
Query:    1 MRTFDFSPLYRSAVGFDRMTSLLDAA-QKNTTVDSYPPYNIVKTGEDAYQISVAVAGFGSQDLDVEVRDGQLVVIGKGASESDEDVNFLHRGIARRAFERRFQLADHVEVKAADLKDGLLVIDLVREIPEAMKPRKIEIQAATTVIEDQTAQA 456
            MR FDFSPLYRS VGFDR+ ++LD A   + T +SYPPYNI KTG+DAY+I++AVAGF   +L VEVRDGQL+V G+ A E++E  N LHRGIA RAFERRFQLADHV V  A  ++GLL + LVREIPEA+KPRKIEI + T  +E Q  +A
Sbjct:    1 MRHFDFSPLYRSTVGFDRLANVLDQALSSDVTQNSYPPYNIEKTGDDAYRITLAVAGFADAELSVEVRDGQLIVTGRKA-EAEEKTNVLHRGIATRAFERRFQLADHVRVVEAVTENGLLHVSLVREIPEALKPRKIEI-SGTKALEAQPVEA 151          
BLAST of mRNA_D-mesarthrocarpus_Contig10666.2.1 vs. uniprot
Match: UPI00193CC60A (Hsp20 family protein n=1 Tax=Sinorhizobium sp. BG8 TaxID=2613773 RepID=UPI00193CC60A)

HSP 1 Score: 179 bits (455), Expect = 2.680e-55
Identity = 92/153 (60.13%), Postives = 117/153 (76.47%), Query Frame = 1
Query:    1 MRTFDFSPLYRSAVGFDRMTSLLDAAQKNTTVDSYPPYNIVKTGEDAYQISVAVAGFGSQDLDVEVRDGQLVVIGKGASESDEDVNFLHRGIARRAFERRFQLADHVEVKAADLKDGLLVIDLVREIPEAMKPRKIEIQAATTVIEDQTAQAA 459
            MR  DFSPLYRS VGFDR+ ++LD+  +     +YPPYNI +TGE+AY+I++AVAGF   +L +E R+  L V G+ A ES E+  FL+RGIA+RAFERRFQLADHVE+++A LK+GLL IDLVREIPEAMKPRKIEI A +   +   AQ+A
Sbjct:    1 MRHVDFSPLYRSTVGFDRLFTMLDSLGQPDQAQTYPPYNIERTGENAYRITMAVAGFDESELSIEAREHALTVKGEKAEESAEESQFLYRGIAKRAFERRFQLADHVEIRSASLKNGLLHIDLVREIPEAMKPRKIEIAAGSAQPKQIEAQSA 153          
BLAST of mRNA_D-mesarthrocarpus_Contig10666.2.1 vs. uniprot
Match: A0A1H3D4E2_9RHOB (Molecular chaperone IbpA n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A1H3D4E2_9RHOB)

HSP 1 Score: 179 bits (454), Expect = 4.470e-55
Identity = 91/139 (65.47%), Postives = 108/139 (77.70%), Query Frame = 1
Query:    1 MRTFDFSPLYRSAVGFDRMTSLLDAAQKNTTVD-SYPPYNIVKTGEDAYQISVAVAGFGSQDLDVEVRDGQLVVIGKGASESDEDVNFLHRGIARRAFERRFQLADHVEVKAADLKDGLLVIDLVREIPEAMKPRKIEI 414
            MR FDFSPLYRS VGFDR+  L+DAA    T   +YPPYNI KTGE AY+ISVAVAGF  QDL VE RDGQL++ GK   + + + +FLHRGIA RAFERRFQLADHV   AA  ++GLL +DLVRE+PEA++PR+IEI
Sbjct:    1 MRNFDFSPLYRSTVGFDRLAGLMDAAMAGETAQPAYPPYNIEKTGESAYRISVAVAGFREQDLTVESRDGQLLIAGKREPQGEGERHFLHRGIAERAFERRFQLADHVRPVAARTENGLLHVDLVREVPEALRPRRIEI 139          
BLAST of mRNA_D-mesarthrocarpus_Contig10666.2.1 vs. uniprot
Match: UPI001F258074 (Hsp20 family protein n=1 Tax=Rhizobium sp. TRM95111 TaxID=2846851 RepID=UPI001F258074)

HSP 1 Score: 179 bits (453), Expect = 5.410e-55
Identity = 89/138 (64.49%), Postives = 109/138 (78.99%), Query Frame = 1
Query:    1 MRTFDFSPLYRSAVGFDRMTSLLDAAQKNTTVDSYPPYNIVKTGEDAYQISVAVAGFGSQDLDVEVRDGQLVVIGKGASESDEDVNFLHRGIARRAFERRFQLADHVEVKAADLKDGLLVIDLVREIPEAMKPRKIEI 414
            MR FDFSPLYRS VGFDR+ ++LD   +     SYPPYNI +TGE+AY+I++AVAGF   +L +E R+  L V G+ A E+ ED  FL+RGIA+RAFERRFQLADHVE++ A LK+GLL IDLVREIPEAMKPR+IEI
Sbjct:    1 MRHFDFSPLYRSTVGFDRLFTMLDTLGQPDQTQSYPPYNIERTGENAYRITMAVAGFAESELSIEAREHTLTVKGEKAEETAEDGRFLYRGIAKRAFERRFQLADHVEIRGAQLKNGLLHIDLVREIPEAMKPRRIEI 138          
BLAST of mRNA_D-mesarthrocarpus_Contig10666.2.1 vs. uniprot
Match: A0A2G5KAJ5_9RHOB (Heat-shock protein n=2 Tax=Amylibacter TaxID=1617805 RepID=A0A2G5KAJ5_9RHOB)

HSP 1 Score: 179 bits (453), Expect = 6.550e-55
Identity = 89/148 (60.14%), Postives = 116/148 (78.38%), Query Frame = 1
Query:    1 MRTFDFSPLYRSAVGFDRMTSLLDAA-QKNTTVDSYPPYNIVKTGEDAYQISVAVAGFGSQDLDVEVRDGQLVVIGKGA-SESDEDVNFLHRGIARRAFERRFQLADHVEVKAADLKDGLLVIDLVREIPEAMKPRKIEIQAATTVIE 438
            MRT+DF+PLYRS VGFDR+ ++LD A     T +SYPPYNI K+G+D Y+I+VAVAGF   ++ VE+RDGQLV+  K A +E+DE++N+LHRGIA RAFE+RFQLADHV    A+ ++GLL +DLVRE+PEA+KPR+IEI      IE
Sbjct:    1 MRTYDFAPLYRSTVGFDRLATMLDRALSAEVTPNSYPPYNIEKSGDDKYRITVAVAGFTEDEISVEMRDGQLVISAKKAETETDENINYLHRGIAARAFEKRFQLADHVRATGAESENGLLHVDLVREVPEALKPRRIEIANPAKTIE 148          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10666.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D2BYT5_9PROT2.680e-7878.43Hsp20 family protein n=1 Tax=Rhodospirillaceae bac... [more]
A0A2D8G2K7_9PROT4.050e-7374.51SHSP domain-containing protein n=1 Tax=Alphaproteo... [more]
A0A2S6Q8I0_9PROT1.060e-6868.63Small heat shock protein IbpA n=1 Tax=Alphaproteob... [more]
A0A6P1T6B9_9RHOB6.620e-5659.74Hsp20 family protein n=1 Tax=Rhodobacteraceae bact... [more]
A0A2A5F533_9RHOB8.530e-5663.45Heat-shock protein n=2 Tax=Rhodobacterales TaxID=2... [more]
A0A840SRP8_9RHOB1.420e-5563.40Molecular chaperone IbpA n=1 Tax=Amaricoccus macau... [more]
UPI00193CC60A2.680e-5560.13Hsp20 family protein n=1 Tax=Sinorhizobium sp. BG8... [more]
A0A1H3D4E2_9RHOB4.470e-5565.47Molecular chaperone IbpA n=2 Tax=Rhodobacteraceae ... [more]
UPI001F2580745.410e-5564.49Hsp20 family protein n=1 Tax=Rhizobium sp. TRM9511... [more]
A0A2G5KAJ5_9RHOB6.550e-5560.14Heat-shock protein n=2 Tax=Amylibacter TaxID=16178... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10666contigD-mesarthrocarpus_Contig10666:1557..2018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog366394.Smed_2715
Preferred nameibpA
PFAMsHSP20
Model size462
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K04080
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.4e-56
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,1RH2X@1224|Proteobacteria,2U96D@28211|Alphaproteobacteria,4B9A8@82115|Rhizobiaceae
DescriptionBelongs to the small heat shock protein (HSP20) family
Cds size462
COG categoryO
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789201.623241-CDS-D-mesarthrocarpus_Contig10666:1556..20181680789201.623241-CDS-D-mesarthrocarpus_Contig10666:1556..2018Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10666 1557..2018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10666.2.1prot_D-mesarthrocarpus_Contig10666.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10666 1557..2018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10666.2.1

>prot_D-mesarthrocarpus_Contig10666.2.1 ID=prot_D-mesarthrocarpus_Contig10666.2.1|Name=mRNA_D-mesarthrocarpus_Contig10666.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=154bp
MRTFDFSPLYRSAVGFDRMTSLLDAAQKNTTVDSYPPYNIVKTGEDAYQI
SVAVAGFGSQDLDVEVRDGQLVVIGKGASESDEDVNFLHRGIARRAFERR
FQLADHVEVKAADLKDGLLVIDLVREIPEAMKPRKIEIQAATTVIEDQTA
QAA*
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mRNA from alignment at D-mesarthrocarpus_Contig10666:1557..2018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10666.2.1 ID=mRNA_D-mesarthrocarpus_Contig10666.2.1|Name=mRNA_D-mesarthrocarpus_Contig10666.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=462bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10666:1557..2018+ (Discosporangium mesarthrocarpum MT17_79)
ATGCGAACTTTTGATTTTTCCCCCCTTTACCGCTCGGCTGTCGGCTTTGA TCGTATGACGTCTTTGCTCGACGCCGCCCAGAAGAACACGACCGTCGACA GCTACCCGCCCTATAACATCGTTAAAACCGGCGAAGACGCTTATCAGATC AGCGTCGCGGTGGCCGGTTTTGGATCCCAGGACCTCGATGTCGAAGTGCG TGACGGACAGCTTGTCGTTATTGGCAAGGGTGCCAGCGAAAGTGACGAGG ATGTGAATTTCCTCCACCGTGGCATTGCCCGGCGGGCATTTGAGCGGCGT TTTCAGCTTGCTGACCATGTCGAGGTGAAGGCGGCGGATCTGAAAGACGG TCTTCTGGTGATTGATCTTGTTCGGGAAATCCCCGAAGCGATGAAACCGC GCAAGATCGAAATCCAGGCGGCGACGACCGTTATCGAAGACCAGACTGCG CAAGCAGCATAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10666:1557..2018+

>mRNA_D-mesarthrocarpus_Contig10666.2.1 ID=mRNA_D-mesarthrocarpus_Contig10666.2.1|Name=mRNA_D-mesarthrocarpus_Contig10666.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=462bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10666:1557..2018+ (Discosporangium mesarthrocarpum MT17_79)
ATGCGAACTTTTGATTTTTCCCCCCTTTACCGCTCGGCTGTCGGCTTTGA
TCGTATGACGTCTTTGCTCGACGCCGCCCAGAAGAACACGACCGTCGACA
GCTACCCGCCCTATAACATCGTTAAAACCGGCGAAGACGCTTATCAGATC
AGCGTCGCGGTGGCCGGTTTTGGATCCCAGGACCTCGATGTCGAAGTGCG
TGACGGACAGCTTGTCGTTATTGGCAAGGGTGCCAGCGAAAGTGACGAGG
ATGTGAATTTCCTCCACCGTGGCATTGCCCGGCGGGCATTTGAGCGGCGT
TTTCAGCTTGCTGACCATGTCGAGGTGAAGGCGGCGGATCTGAAAGACGG
TCTTCTGGTGATTGATCTTGTTCGGGAAATCCCCGAAGCGATGAAACCGC
GCAAGATCGAAATCCAGGCGGCGACGACCGTTATCGAAGACCAGACTGCG
CAAGCAGCATAA
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