mRNA_D-mesarthrocarpus_Contig10665.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10665.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10665.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10665.1.1 vs. uniprot
Match: A0A6H5K1D7_9PHAE (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D7_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.560e-30
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 1
Query:    1 MVPNLLKLRAQLDEVVAVAMDGNESYQYKLKEAWEKFLNTRQNRPSELVAKFLDSKLRGEKGMSDDDVEAVLDKVMVIFR 240
            M+ NLL  RA+LDE +  A DGNESY+YKLKEAWE FLN R NRP+EL+AKFLD KL+GEKG SDD+VEAVLD+VMV+FR
Sbjct:    1 MISNLLAFRAKLDECINTACDGNESYRYKLKEAWEAFLNARHNRPAELMAKFLDVKLKGEKGTSDDEVEAVLDRVMVLFR 80          
BLAST of mRNA_D-mesarthrocarpus_Contig10665.1.1 vs. uniprot
Match: D7FQS5_ECTSI (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS5_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 5.470e-29
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 1
Query:    1 MVPNLLKLRAQLDEVVAVAMDGNESYQYKLKEAWEKFLNTRQNRPSELVAKFLDSKLRGEKGMSDDDVEAVLDKVMVIFR 240
            M+ NLL  RA+LDE +  A DGNESY+YKLKEAWE FLN R NRP+EL+AKFLD KL+GEKG SDD+VEAVL++VMV+FR
Sbjct:  344 MISNLLAFRAKLDECINTACDGNESYRYKLKEAWEAFLNARHNRPAELMAKFLDVKLKGEKGTSDDEVEAVLERVMVLFR 423          
BLAST of mRNA_D-mesarthrocarpus_Contig10665.1.1 vs. uniprot
Match: UPI00103E2CE4 (cullin-4A-like n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103E2CE4)

HSP 1 Score: 85.1 bits (209), Expect = 3.660e-19
Identity = 41/81 (50.62%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 MVPNLLKLRAQLDEVVAVAMDGNESYQYKLKEAWEKFLNTRQNRPSELVAKFLDSKLR-GEKGMSDDDVEAVLDKVMVIFR 240
            MVP LL+ + QLD VV+     NE + Y ++EA+E F+N RQN+P+EL+AKF+D KLR G K  +++++E +LDK+MV+FR
Sbjct:    1 MVPELLEFKEQLDHVVSSCFQRNEKFTYSVREAFEHFINQRQNKPAELIAKFVDVKLRAGNKEATEEELERLLDKIMVLFR 81          
BLAST of mRNA_D-mesarthrocarpus_Contig10665.1.1 vs. uniprot
Match: A0A1Y1HMX7_KLENI (Cullin 4 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HMX7_KLENI)

HSP 1 Score: 88.6 bits (218), Expect = 1.040e-18
Identity = 44/81 (54.32%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 MVPNLLKLRAQLDEVVAVAMDGNESYQYKLKEAWEKFLNTRQNRPSELVAKFLDSKLR-GEKGMSDDDVEAVLDKVMVIFR 240
            MV NLL L+A+LD ++  +  GNE++   LKEA+E  +N RQNRP+EL+AK++D+ LR G KG SD+++EA LDKV+V+FR
Sbjct:  406 MVSNLLDLKAKLDNILVQSFAGNEAFGNSLKEAFEHLINVRQNRPAELIAKYIDALLRAGNKGASDEELEATLDKVLVLFR 486          
BLAST of mRNA_D-mesarthrocarpus_Contig10665.1.1 vs. uniprot
Match: A0A7S4D7J7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7J7_HETAK)

HSP 1 Score: 87.4 bits (215), Expect = 2.230e-18
Identity = 42/80 (52.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 MVPNLLKLRAQLDEVVAVAMDGNESYQYKLKEAWEKFLNTRQNRPSELVAKFLDSKLRGEKGMSDDDVEAVLDKVMVIFR 240
            +V  LL  R Q + V+  A + + ++   +K+AWE FLN +QNRP+EL+AK++DSKLRG+KG +D +VEA LDKVMV+FR
Sbjct:   59 LVERLLSFRDQAEAVLVGAFNRDPAFAAAVKDAWEHFLNVKQNRPAELLAKYVDSKLRGQKGSTDTEVEATLDKVMVVFR 138          
BLAST of mRNA_D-mesarthrocarpus_Contig10665.1.1 vs. uniprot
Match: A0A4P9VWR5_9FUNG (Cullin family-domain-containing protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9VWR5_9FUNG)

HSP 1 Score: 87.0 bits (214), Expect = 2.500e-18
Identity = 41/80 (51.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 MVPNLLKLRAQLDEVVAVAMDGNESYQYKLKEAWEKFLNTRQNRPSELVAKFLDSKLRGEKGMSDDDVEAVLDKVMVIFR 240
            MV +LLK + +LD+V + A    +++   LKE++E F+N RQN+P+EL+AKF+D KLRGEKG+S+D++EA LD+ +V+FR
Sbjct:    1 MVEDLLKFKLRLDDVFSRAFQRADAFGNSLKESFENFINMRQNKPAELIAKFVDVKLRGEKGVSEDEMEAALDRCLVLFR 80          
BLAST of mRNA_D-mesarthrocarpus_Contig10665.1.1 vs. uniprot
Match: A0A7R9UET0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UET0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.590e-18
Identity = 41/80 (51.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 MVPNLLKLRAQLDEVVAVAMDGNESYQYKLKEAWEKFLNTRQNRPSELVAKFLDSKLRGEKGMSDDDVEAVLDKVMVIFR 240
            +V  LL+    L++++  A + N+ + +KLK AWE FLN R+ +P+EL+AKFLD K+R +KG+S+ DVE VLDKVM IFR
Sbjct:  338 LVARLLEYNDTLNDILQHAFESNKDFAFKLKTAWEHFLNLRETKPAELMAKFLDEKMRSQKGLSEKDVEVVLDKVMQIFR 417          
BLAST of mRNA_D-mesarthrocarpus_Contig10665.1.1 vs. uniprot
Match: A0A7S3REU1_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3REU1_9SPIT)

HSP 1 Score: 86.7 bits (213), Expect = 4.850e-18
Identity = 44/81 (54.32%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 MVPNLLKLRAQLDEVVAVAMDGNESYQYKLKEAWEKFLNTRQNRPSELVAKFLDSKLR-GEKGMSDDDVEAVLDKVMVIFR 240
            MV  LL+L+A+LD ++  A   NE + + LKEA+E F+N RQNRP+EL+A++LDSKLR G KG S+D++E+ LDK M +FR
Sbjct:  215 MVQQLLELKAKLDLILIDAFANNEQFGHTLKEAFEHFINIRQNRPAELLARYLDSKLRAGNKGSSEDEIESCLDKAMTLFR 295          
BLAST of mRNA_D-mesarthrocarpus_Contig10665.1.1 vs. uniprot
Match: A0A250WVC7_9CHLO (CULLIN_2 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WVC7_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 6.690e-18
Identity = 41/81 (50.62%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    1 MVPNLLKLRAQLDEVVAVAMDGNESYQYKLKEAWEKFLNTRQNRPSELVAKFLDSKLR-GEKGMSDDDVEAVLDKVMVIFR 240
            MV  LL+L+++LDEV+  ++  NES+   LKEA+E F+N RQN+P+EL+AKF+D ++R G K  S++++EA+LD+V+V+FR
Sbjct:  337 MVERLLELKSRLDEVLQKSLQRNESFSNSLKEAFESFINQRQNKPAELIAKFIDGRMRSGSKAGSEEEIEAMLDRVLVLFR 417          
BLAST of mRNA_D-mesarthrocarpus_Contig10665.1.1 vs. uniprot
Match: A0A7R9VBX8_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VBX8_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 1.090e-17
Identity = 42/81 (51.85%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    1 MVPNLLKLRAQLDEVVAVAMDGNESYQYKLKEAWEKFLNTRQNRPSELVAKFLDSKLR-GEKGMSDDDVEAVLDKVMVIFR 240
            MV  LL+L+ QLDEV++ A   NE++   LKEA+E F+N RQ++P+EL+AKF+D++LR G KG +++++E +LDKV+V+FR
Sbjct:   64 MVERLLELKTQLDEVLSHAFCRNEAFSNALKEAFESFINQRQSKPAELIAKFIDAQLRMGNKGQTEEELEGLLDKVLVLFR 144          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10665.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1D7_9PHAE2.560e-3072.50CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
D7FQS5_ECTSI5.470e-2971.25CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
UPI00103E2CE43.660e-1950.62cullin-4A-like n=1 Tax=Ostrinia furnacalis TaxID=9... [more]
A0A1Y1HMX7_KLENI1.040e-1854.32Cullin 4 n=1 Tax=Klebsormidium nitens TaxID=105231... [more]
A0A7S4D7J7_HETAK2.230e-1852.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4P9VWR5_9FUNG2.500e-1851.25Cullin family-domain-containing protein n=1 Tax=Bl... [more]
A0A7R9UET0_9STRA3.590e-1851.25Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3REU1_9SPIT4.850e-1854.32Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A250WVC7_9CHLO6.690e-1850.62CULLIN_2 domain-containing protein n=1 Tax=Chlamyd... [more]
A0A7R9VBX8_9CHLO1.090e-1751.85Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10665contigD-mesarthrocarpus_Contig10665:2757..3983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQS5
PFAMsCullin,Cullin_Nedd8
Model size243
Max annot lvl2759|Eukaryota
KEGG koko:K10609
KEGG Pathwayko03420,ko04120,map03420,map04120
KEGG ModuleM00385,M00386
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0019899,GO:0031461,GO:0031625,GO:0032991,GO:0033554,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0080008,GO:1902494,GO:1990234
Exons2
Evalue8.97e-30
EggNOG OGsCOG5647@1|root,KOG2167@2759|Eukaryota
Descriptionubiquitin protein ligase binding
Cds size243
COG categoryO
BRITEko00000,ko00001,ko00002,ko03400,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789201.542903-CDS-D-mesarthrocarpus_Contig10665:2756..28781680789201.542903-CDS-D-mesarthrocarpus_Contig10665:2756..2878Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10665 2757..2878 +
1680789201.556712-CDS-D-mesarthrocarpus_Contig10665:3862..39831680789201.556712-CDS-D-mesarthrocarpus_Contig10665:3862..3983Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10665 3863..3983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10665.1.1prot_D-mesarthrocarpus_Contig10665.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10665 2757..3983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10665.1.1

>prot_D-mesarthrocarpus_Contig10665.1.1 ID=prot_D-mesarthrocarpus_Contig10665.1.1|Name=mRNA_D-mesarthrocarpus_Contig10665.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=81bp
MVPNLLKLRAQLDEVVAVAMDGNESYQYKLKEAWEKFLNTRQNRPSELVA
KFLDSKLRGEKGMSDDDVEAVLDKVMVIFR*
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mRNA from alignment at D-mesarthrocarpus_Contig10665:2757..3983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10665.1.1 ID=mRNA_D-mesarthrocarpus_Contig10665.1.1|Name=mRNA_D-mesarthrocarpus_Contig10665.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1227bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10665:2757..3983+ (Discosporangium mesarthrocarpum MT17_79)
ATGGTGCCAAACCTCCTCAAGCTCCGGGCCCAGCTCGACGAGGTGGTGGC TGTGGCTATGGATGGCAATGAGTCCTACCAGTACAAGCTCAAGGAGGCTT GGGAAAAGTTCCTCAACACAAGGTGTGGGTGGGAGGGGGGGAGGGGAGGG TTGAACCTCAGTGCTGAAGAGCCTAGCGCTGTACAGTAGGCATGTTTTAA TGCTTTTTTTTTCTGAGAGCTTTCTCTCGGTGAAGGAAAAGAGAGGAGAG GCGGGCGCATCCTCTCTGCCTGTGGCAATGTACCCTGCTTGCTATCAGGG GAGTCCCTGCTCTGATGTGACCACTTTGCATGGTATTCCAGAAGCGTATT CTGGTGCATTTGTTAGGCGGTCGGGGTAGAGCCCCCCTTTCTCATGGGGA GCGAGGCACCCCCTTTCTTTTTTTTCCTTTCTTTTTTTTCCTTTCTTTTT TTTTCCTTCCCTTTTTTTCTCCAAGGGGAGCATGCGTCAACTCTCCCCGT TGCACTTTGGTTCAAGGAGCACCGGGCTATGCTGTATGCCGTGGTGTACA ACACGTTGTGCTGCCTGGTGTTTCGCCCTCATTTGGAGCTGTACAGCAGT GGGGGTAGCAATTGCAAACTCATCCCTTGAAGGTTTGAAGCCTGACCGTG AGTTGTGGGTGTGTGGTTTGCGGCCTGTGGTTTTCTCTTGTGCGCCACTG ATTGCGTGCTTCCTTGCACAGTGCCGTCAGCTAAGCATGCTCAGGTGCTA TACTGCACCGTAGTTTAGGTGGCCGTTCTCCTCTGTCCTTCTGGTCAACG TGAACAGAGAAAATCGCAGATTGTAGTAGCAGGAAAGAGACAAGAGGGGT GCACTGCCAAAGTCCCCTTCACTGTGGTTTGAAAGAAGAGATTGTGTAGA GTATGTCGGGGCGGGAAGAAAAAATGAGCGTGTGTGTTGTTGGTGTCCTT GTGGCTGGGGCGTGACACCAGAGAGGTCCAGGCGTTCTTTTCATGGCGGT GCGCTCCTTGTCTCCTTGTCTCTGGCTAGTGCCTCGGAAACTTTGGCACC GCTGCCGCTCTAAAACCTCCCTCATTCATTCATGGGCGGTCAACCCTCTC GAAAAGGCAAAACCGACCGTCGGAGCTGGTGGCCAAGTTTCTTGACAGCA AGCTCAGGGGAGAGAAGGGCATGAGCGATGATGACGTGGAGGCTGTGCTG GACAAGGTCATGGTCATTTTTAGGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10665:2757..3983+

>mRNA_D-mesarthrocarpus_Contig10665.1.1 ID=mRNA_D-mesarthrocarpus_Contig10665.1.1|Name=mRNA_D-mesarthrocarpus_Contig10665.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=243bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10665:2757..3983+ (Discosporangium mesarthrocarpum MT17_79)
ATGGTGCCAAACCTCCTCAAGCTCCGGGCCCAGCTCGACGAGGTGGTGGC
TGTGGCTATGGATGGCAATGAGTCCTACCAGTACAAGCTCAAGGAGGCTT
GGGAAAAGTTCCTCAACACAAGGCAAAACCGACCGTCGGAGCTGGTGGCC
AAGTTTCTTGACAGCAAGCTCAGGGGAGAGAAGGGCATGAGCGATGATGA
CGTGGAGGCTGTGCTGGACAAGGTCATGGTCATTTTTAGGTGA
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