mRNA_D-mesarthrocarpus_Contig10659.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10659.2.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI) HSP 1 Score: 236 bits (601), Expect = 9.990e-69 Identity = 116/174 (66.67%), Postives = 142/174 (81.61%), Query Frame = 1
Query: 1 RVTGRSLLEGWAAASLKASVLDAQVLRYEDLKPGMIVQGDVAACEGFGVLLRLGNGVRTLVNKQHLGDTGMKNPKGRFKVGSKMKGRVLTVDVGAGRATVTAKKSMVKDQNTPITTYDEATV--GTKCVGFVTKVASFGLHVSFYGNVYGLIPAKHLDRHGIEDPSQGFTAGQV 516
RVTG SL+EGWAAASL+ SVL A VLRY+DLKPG +V+G+VAA E FG+L++LG GVR LV K HLGD G+KNPK RFKVG+++KGRVLTVD G+ ++T+T K+SMVKD+ I+TY EA GT C GFVTKVA FGLHVSFYGNV+GL+P+K L +HGI+DPS+ F GQV
Sbjct: 539 RVTGSSLVEGWAAASLRPSVLSAAVLRYQDLKPGSLVEGEVAAVEAFGLLVKLGEGVRALVPKNHLGDVGVKNPKARFKVGARVKGRVLTVDAGSSKSTLTLKRSMVKDKREVISTYTEAKEREGTACTGFVTKVAPFGLHVSFYGNVFGLLPSKALTKHGIQDPSEAFAVGQV 712
BLAST of mRNA_D-mesarthrocarpus_Contig10659.2.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE) HSP 1 Score: 231 bits (589), Expect = 4.110e-67 Identity = 114/174 (65.52%), Postives = 142/174 (81.61%), Query Frame = 1
Query: 1 RVTGRSLLEGWAAASLKASVLDAQVLRYEDLKPGMIVQGDVAACEGFGVLLRLGNGVRTLVNKQHLGDTGMKNPKGRFKVGSKMKGRVLTVDVGAGRATVTAKKSMVKDQNTPITTYDEATV--GTKCVGFVTKVASFGLHVSFYGNVYGLIPAKHLDRHGIEDPSQGFTAGQV 516
RVTG SL+EGWAAASL+ SVL A VLRYEDL+PG +V+G+VAA E FG+L++LG GVR LV + HLGD +KNPK RFKVG+++KGRVLTVD G+ ++T+T K+S+VKD+ I+TY EA GT C GFVTKVA FGLHVSFYGNV+GL+P+K L +HGI+DPS+ FT GQV
Sbjct: 591 RVTGSSLVEGWAAASLRPSVLSAAVLRYEDLQPGSLVEGEVAAVEAFGLLVKLGEGVRALVPRNHLGDVTIKNPKARFKVGARVKGRVLTVDPGSSKSTLTLKRSLVKDKREVISTYTEAKEREGTACTGFVTKVAPFGLHVSFYGNVFGLLPSKALTKHGIQDPSEAFTVGQV 764
BLAST of mRNA_D-mesarthrocarpus_Contig10659.2.1 vs. uniprot
Match: A0A1U7U0Y6_CARSF (protein RRP5 homolog n=1 Tax=Carlito syrichta TaxID=1868482 RepID=A0A1U7U0Y6_CARSF) HSP 1 Score: 130 bits (327), Expect = 6.980e-32 Identity = 70/172 (40.70%), Postives = 106/172 (61.63%), Query Frame = 1
Query: 1 RVTGRSLLEGWAAASLKASVLDAQVLRYEDLKPGMIVQGDVAACEGFGVLLRLGNGVRTLVNKQHLGDTGMKNPKGRFKVGSKMKGRVLTVDVGAGRATVTAKKSMVKDQNTPITTYDEATVGTKCVGFVTKVASFGLHVSFYGNVYGLIPAKHLDRHGIEDPSQGFTAGQV 516
RV S ++G A SL+ SV++AQ LRY D+KPG +V+G V + FG+L+++G +R LV HL D MKNP+ ++ VG++++ RVL D + +T KK++V+ + +T Y +A G + GF+ KVA +G V FY +V GL+P + L I P + F AGQV
Sbjct: 386 RVIDYSQMDGLALLSLRTSVIEAQFLRYHDIKPGAVVKGTVLTVKPFGMLVKVGEHMRGLVPTLHLADVLMKNPEKKYPVGAEVQCRVLLCDPEVKKLMMTLKKTLVESRLPAVTCYADARPGLQTHGFIAKVADYGCIVKFYSDVRGLVPRQELGAQCIPHPERVFYAGQV 557
BLAST of mRNA_D-mesarthrocarpus_Contig10659.2.1 vs. uniprot
Match: G5CAJ3_HETGA (RRP5-like protein n=1 Tax=Heterocephalus glaber TaxID=10181 RepID=G5CAJ3_HETGA) HSP 1 Score: 129 bits (323), Expect = 2.400e-31 Identity = 70/172 (40.70%), Postives = 104/172 (60.47%), Query Frame = 1
Query: 1 RVTGRSLLEGWAAASLKASVLDAQVLRYEDLKPGMIVQGDVAACEGFGVLLRLGNGVRTLVNKQHLGDTGMKNPKGRFKVGSKMKGRVLTVDVGAGRATVTAKKSMVKDQNTPITTYDEATVGTKCVGFVTKVASFGLHVSFYGNVYGLIPAKHLDRHGIEDPSQGFTAGQV 516
R+T S ++G A SL+ SV++AQ LRY D+K G +V+G V FG+L+++G VR LV HL D MKNP+ +++VG+++K RVL D A + +T KK++V + IT Y++A G + G + + +G V FY +V GL+P L I DP + F AGQV
Sbjct: 420 RITDYSPMDGLALLSLRTSVIEAQYLRYHDIKTGAVVKGTVLTMRPFGMLVKVGEQVRGLVPATHLADILMKNPEKKYQVGAEVKCRVLLCDPEAKQLIMTLKKTLVTSKLPVITCYEDAKPGLQTHGVIHRAKDYGCIVRFYNDVQGLVPKHELGAQCIPDPEKAFYAGQV 591
BLAST of mRNA_D-mesarthrocarpus_Contig10659.2.1 vs. uniprot
Match: UPI000A35ADD9 (protein RRP5 homolog isoform X1 n=5 Tax=Heterocephalus glaber TaxID=10181 RepID=UPI000A35ADD9) HSP 1 Score: 129 bits (323), Expect = 2.410e-31 Identity = 70/172 (40.70%), Postives = 104/172 (60.47%), Query Frame = 1
Query: 1 RVTGRSLLEGWAAASLKASVLDAQVLRYEDLKPGMIVQGDVAACEGFGVLLRLGNGVRTLVNKQHLGDTGMKNPKGRFKVGSKMKGRVLTVDVGAGRATVTAKKSMVKDQNTPITTYDEATVGTKCVGFVTKVASFGLHVSFYGNVYGLIPAKHLDRHGIEDPSQGFTAGQV 516
R+T S ++G A SL+ SV++AQ LRY D+K G +V+G V FG+L+++G VR LV HL D MKNP+ +++VG+++K RVL D A + +T KK++V + IT Y++A G + G + + +G V FY +V GL+P L I DP + F AGQV
Sbjct: 429 RITDYSPMDGLALLSLRTSVIEAQYLRYHDIKTGAVVKGTVLTMRPFGMLVKVGEQVRGLVPATHLADILMKNPEKKYQVGAEVKCRVLLCDPEAKQLIMTLKKTLVTSKLPVITCYEDAKPGLQTHGVIHRAKDYGCIVRFYNDVQGLVPKHELGAQCIPDPEKAFYAGQV 600
BLAST of mRNA_D-mesarthrocarpus_Contig10659.2.1 vs. uniprot
Match: F6U429_HORSE (Programmed cell death 11 n=30 Tax=Laurasiatheria TaxID=314145 RepID=F6U429_HORSE) HSP 1 Score: 128 bits (321), Expect = 4.470e-31 Identity = 67/172 (38.95%), Postives = 104/172 (60.47%), Query Frame = 1
Query: 1 RVTGRSLLEGWAAASLKASVLDAQVLRYEDLKPGMIVQGDVAACEGFGVLLRLGNGVRTLVNKQHLGDTGMKNPKGRFKVGSKMKGRVLTVDVGAGRATVTAKKSMVKDQNTPITTYDEATVGTKCVGFVTKVASFGLHVSFYGNVYGLIPAKHLDRHGIEDPSQGFTAGQV 516
R+ S ++ A SL+ SV++AQ LRY D+KPG +V+G V + +G+L+++G +R LV HL D MKNP+ +++ G ++K RVL D A + +T KK++V+ + IT Y +A G + GF+ +V +G V FY +V GL+P L + DP + F AGQV
Sbjct: 419 RIIDYSQMDELALLSLRTSVIEAQYLRYHDIKPGALVKGTVLTIKPYGMLVKVGEQIRGLVPPMHLADILMKNPEKKYRTGDEVKCRVLLCDPEARKLMMTLKKTLVESKLPAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQV 590
BLAST of mRNA_D-mesarthrocarpus_Contig10659.2.1 vs. uniprot
Match: A0A480K237_PIG (Protein RRP5 homolog n=21 Tax=Suina TaxID=35497 RepID=A0A480K237_PIG) HSP 1 Score: 127 bits (320), Expect = 6.070e-31 Identity = 68/172 (39.53%), Postives = 101/172 (58.72%), Query Frame = 1
Query: 1 RVTGRSLLEGWAAASLKASVLDAQVLRYEDLKPGMIVQGDVAACEGFGVLLRLGNGVRTLVNKQHLGDTGMKNPKGRFKVGSKMKGRVLTVDVGAGRATVTAKKSMVKDQNTPITTYDEATVGTKCVGFVTKVASFGLHVSFYGNVYGLIPAKHLDRHGIEDPSQGFTAGQV 516
R+ S ++ SL+ SV++AQ LRY D+KPG +V+G V + +G+L+ +G +R LV HL D MKNP+ ++ VG ++K RVL D A R +T KK++V+ + IT Y +A G + GF+ +V +G V FY +V GL+P L + DP F AGQV
Sbjct: 337 RIIDYSRMDEMVLLSLRTSVIEAQFLRYHDIKPGALVKGKVLTIKPYGMLVNMGREIRGLVPPMHLADILMKNPEKKYHVGDEVKCRVLLCDPEAKRLMMTLKKTLVESKLPAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPESVFYAGQV 508
BLAST of mRNA_D-mesarthrocarpus_Contig10659.2.1 vs. uniprot
Match: A0A452RUC4_URSAM (Programmed cell death 11 n=1 Tax=Ursus americanus TaxID=9643 RepID=A0A452RUC4_URSAM) HSP 1 Score: 127 bits (320), Expect = 6.090e-31 Identity = 65/172 (37.79%), Postives = 104/172 (60.47%), Query Frame = 1
Query: 1 RVTGRSLLEGWAAASLKASVLDAQVLRYEDLKPGMIVQGDVAACEGFGVLLRLGNGVRTLVNKQHLGDTGMKNPKGRFKVGSKMKGRVLTVDVGAGRATVTAKKSMVKDQNTPITTYDEATVGTKCVGFVTKVASFGLHVSFYGNVYGLIPAKHLDRHGIEDPSQGFTAGQV 516
RV S ++ A SL+ S+++AQ LRY D+KPG +V+G V + +G+L+++G +R L+ HL D MKNP+ ++++G ++K RVL D A + +T KK++++ + IT Y +A G + GF+ +V G V FY +V GL+P L + DP + F AGQV
Sbjct: 421 RVIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGALVEGTVLTVKSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADARPGLQTHGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQV 592
BLAST of mRNA_D-mesarthrocarpus_Contig10659.2.1 vs. uniprot
Match: A0A452VGI4_URSMA (Programmed cell death 11 n=1 Tax=Ursus maritimus TaxID=29073 RepID=A0A452VGI4_URSMA) HSP 1 Score: 127 bits (320), Expect = 6.090e-31 Identity = 65/172 (37.79%), Postives = 104/172 (60.47%), Query Frame = 1
Query: 1 RVTGRSLLEGWAAASLKASVLDAQVLRYEDLKPGMIVQGDVAACEGFGVLLRLGNGVRTLVNKQHLGDTGMKNPKGRFKVGSKMKGRVLTVDVGAGRATVTAKKSMVKDQNTPITTYDEATVGTKCVGFVTKVASFGLHVSFYGNVYGLIPAKHLDRHGIEDPSQGFTAGQV 516
RV S ++ A SL+ S+++AQ LRY D+KPG +V+G V + +G+L+++G +R L+ HL D MKNP+ ++++G ++K RVL D A + +T KK++++ + IT Y +A G + GF+ +V G V FY +V GL+P L + DP + F AGQV
Sbjct: 420 RVIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGALVEGTVLTVKSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITRYADARPGLQTHGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQV 591
BLAST of mRNA_D-mesarthrocarpus_Contig10659.2.1 vs. uniprot
Match: A0A452VGN1_URSMA (Programmed cell death 11 n=1 Tax=Ursus maritimus TaxID=29073 RepID=A0A452VGN1_URSMA) HSP 1 Score: 127 bits (320), Expect = 6.090e-31 Identity = 65/172 (37.79%), Postives = 104/172 (60.47%), Query Frame = 1
Query: 1 RVTGRSLLEGWAAASLKASVLDAQVLRYEDLKPGMIVQGDVAACEGFGVLLRLGNGVRTLVNKQHLGDTGMKNPKGRFKVGSKMKGRVLTVDVGAGRATVTAKKSMVKDQNTPITTYDEATVGTKCVGFVTKVASFGLHVSFYGNVYGLIPAKHLDRHGIEDPSQGFTAGQV 516
RV S ++ A SL+ S+++AQ LRY D+KPG +V+G V + +G+L+++G +R L+ HL D MKNP+ ++++G ++K RVL D A + +T KK++++ + IT Y +A G + GF+ +V G V FY +V GL+P L + DP + F AGQV
Sbjct: 418 RVIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGALVEGTVLTVKSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITRYADARPGLQTHGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQV 589 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10659.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10659.2.1 >prot_D-mesarthrocarpus_Contig10659.2.1 ID=prot_D-mesarthrocarpus_Contig10659.2.1|Name=mRNA_D-mesarthrocarpus_Contig10659.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=172bp RVTGRSLLEGWAAASLKASVLDAQVLRYEDLKPGMIVQGDVAACEGFGVLback to top mRNA from alignment at D-mesarthrocarpus_Contig10659:2434..3693- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10659.2.1 ID=mRNA_D-mesarthrocarpus_Contig10659.2.1|Name=mRNA_D-mesarthrocarpus_Contig10659.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1260bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10659:2434..3693- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10659:2434..3693- >mRNA_D-mesarthrocarpus_Contig10659.2.1 ID=mRNA_D-mesarthrocarpus_Contig10659.2.1|Name=mRNA_D-mesarthrocarpus_Contig10659.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=516bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10659:2434..3693- (Discosporangium mesarthrocarpum MT17_79)back to top |