mRNA_D-mesarthrocarpus_Contig10652.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10652.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10652.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10652.2.1 vs. uniprot
Match: A0A397E722_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E722_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.850e-20
Identity = 63/200 (31.50%), Postives = 99/200 (49.50%), Query Frame = 1
Query:    1 VRKGVRGHDVDTPTKNSMVARCLERRGTSKKLPYGSGKDIAQECGISRTTIFRHLKTYDLQKADGQSMDMSRGRQGRCGRPNRK----------------------WAVKSGTPLSSLWRLCKRVGARKHKRWVKPVLS-----DKQKRDRVGFALSHMRR-KGGIRVVVDDMYDWVHVDEKWFYVMKDGRGIYLHPEED 516
            +R+    HD+    + S+    L+ +   + LPYG GK++ Q+ G+S+ T+ +  K     KA     +++  ++GRCG P R+                       AV SG   ++LWRL +    R+    +KP+++     DK K DRV FA S +R+ + G+  +  DM D VH+DEKWFYV    R  YL  +ED
Sbjct:    1 MRRATTKHDIPNDQRLSLYHELLQHKENGR-LPYGKGKELMQQYGLSKQTLSKIWKAGQESKARTGLANIANKKKGRCGHPRRRSIKDLEVAIKAVPPHSRLTLRSLAVSSGIAPTTLWRLLQSKKLRRRTSHLKPMVTEPMVTDKHKADRVVFARSFLRQCRDGM--MWHDMMDRVHIDEKWFYVTMVKRRYYLWHDED 197          
BLAST of mRNA_D-mesarthrocarpus_Contig10652.2.1 vs. uniprot
Match: A0A6A4ZZC0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZZC0_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.060e-20
Identity = 65/202 (32.18%), Postives = 101/202 (50.00%), Query Frame = 1
Query:    1 VRKGVRGHDVDTPTKNSMVARCLERRGTSKKLPYGSGKDIAQECGISRTTIFRHLKTYDLQKADGQSMDMSRGRQGRCGRPNRK----------------------WAVKSGTPLSSLWRLCKRVGARKHKRWVKPVLS-----DKQKRDRVGFALSHMRR-KGGIRVVVDDMYDWVHVDEKWFYVMKDGRGIYLHPEEDAP 522
            +R+    HD+    + S+    L+ +   + LPYG GK++ Q+ G+S+ T+ +  K     KA     +++  ++GRCGRP R+                       AV SG   ++LWRL +    R+    +KP+++     DK K DRV FA S +R+ + G+  +  DM D VH+DEKWFYV    R  YL  +ED P
Sbjct:    1 MRRATTKHDIPNDQRLSLYHELLQHKENGR-LPYGKGKELMQQYGLSKQTLSKIWKAGQESKARTGLANVAIKKKGRCGRPRRRSIKDLEVAIKAVPAHLRLTLRSLAVSSGIAPTTLWRLLQSKKLRRRTSHLKPMVTEPMVTDKHKADRVVFARSFLRQCRDGM--MWHDMMDRVHIDEKWFYVTMVKRRYYLWHDEDLP 199          
BLAST of mRNA_D-mesarthrocarpus_Contig10652.2.1 vs. uniprot
Match: A0A6A5ATA6_9STRA (HTH_Tnp_Tc3_2 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ATA6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.570e-18
Identity = 56/189 (29.63%), Postives = 92/189 (48.68%), Query Frame = 1
Query:   22 HDVDTPTKNSMVARCLERRGTSKKLPYGSGKDIAQECGISRTTIFRHLKTYDLQKADGQSMDMSRGRQGRCGR-PNRKW---------------------AVKSGTPLSSLWRLCKRVGARKHKRWVKPVLSDKQKRDRVGFALSHMRRKGGIRVVVDDMYDWVHVDEKWFYVMKDGRGIYLHPEEDAP 522
            HD+    +  +    L  +  + +LP G  K++  + G+SR T+ +  +     KA     D++  ++GRCGR P+R                       AV SG P ++LWR+ +    ++    +KP++++K K DR+ FA S +       +V  DMYD VH+DEKWFY+ +  R  YL  +E  P
Sbjct:    8 HDLPNDQRLGLYHELLVHK-VNGRLPKGKAKELLAQYGVSRQTVSKIWRRGQRSKARNGLADVALKKKGRCGRRPSRTMSDIETAIKSVPPVLRRTFESLAVSSGIPRTTLWRVLQTKKLQRRTSRLKPMVTEKHKADRLAFARSFVHGTSCNGMVWHDMYDRVHIDEKWFYLTEVNRRYYLWHDESTP 195          
BLAST of mRNA_D-mesarthrocarpus_Contig10652.2.1 vs. uniprot
Match: W4H8J1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8J1_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.820e-16
Identity = 61/197 (30.96%), Postives = 93/197 (47.21%), Query Frame = 1
Query:    1 VRKGVRGHDVDTPTKNSMVARCLERRGTSKKLPYGSGKDIAQECGISRTTIFRHLKTYDLQKADGQSMDMSRGRQGRCGRPNRK----------------------WAVKSGTPLSSLWRLCKRVGARKHKRWVKPVLSDKQKRDRVGFALSHMRR-KGGIRVVVDDMYDWVHVDEKWFYVMKDGRGIYLHPEEDAP 522
            +R+    HD+    + S+    L+ +   + LPYG GK++ Q+ G+S+ T+ +  K     KA     +++  ++GRCGRP R+                       AV SG   ++LWRL               + S K + DRV FA S +R+ + G+  +  DM D VH+DEKWFYV    R  YL  +ED P
Sbjct:    1 MRRATTKHDIPNDQRLSLYHELLQHKENGR-LPYGKGKELMQQYGLSKQTLSKIWKAGQESKARTGLANVANKKKGRCGRPRRRSIKDLEVAIKAVPPHLRLTLRSLAVSSGIAPTTLWRL---------------LQSKKLRPDRVVFARSFLRQCRDGM--MWHDMMDRVHIDEKWFYVTMVKRRYYLWHDEDLP 179          
BLAST of mRNA_D-mesarthrocarpus_Contig10652.2.1 vs. uniprot
Match: A0A8I6XKP1_HORVV (Uncharacterized protein n=4 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XKP1_HORVV)

HSP 1 Score: 77.4 bits (189), Expect = 6.210e-14
Identity = 52/158 (32.91%), Postives = 79/158 (50.00%), Query Frame = 1
Query:  112 KDIAQECGISRTTIFRHLKTYDLQKADGQSMDMSRGRQGRCGRP--------------NRKWAVKS-----GTPLSSLWRLCKRVGARKHKRWVKPVLSDKQKRDRVGFALSHMRRK--GGIRVVVDDMYDWVHVDEKWFYVMKDGRGIYLHPEEDAP 522
            K++    G     I R  +T  +QK  GQ +D+S  R+G CGR               N++  ++S     G   ++L++  K    R+H   VKP+L++K KRDRV F LS +     G +      M++ VH+DEKWF + K  R  YL P+E+ P
Sbjct:   20 KEVVALFGAHVRVIQRIWETAMIQKGLGQEVDVSNKRKGNCGRKPYDDILSLIPTIPLNKRSTIRSLAKALGVSPTTLYKKFKLKKIRRHSNSVKPLLTEKHKRDRVEFCLSMLDEATLGDVSPSFRSMHNIVHIDEKWFCMTKKKRNYYLLPDEEDP 177          
BLAST of mRNA_D-mesarthrocarpus_Contig10652.2.1 vs. uniprot
Match: UPI00125D190E (uncharacterized protein LOC116027098 n=2 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D190E)

HSP 1 Score: 77.0 bits (188), Expect = 2.670e-13
Identity = 55/180 (30.56%), Postives = 85/180 (47.22%), Query Frame = 1
Query:   43 KNSMVARCLERRGTSKKLPYGSGKDIAQECGISRTTIFRHLKTYDLQKADGQSMDMSRGRQGRCGRP--------------NRKWAVKS-GTPLS----SLWRLCKRVGARKHKRWVKPVLSDKQKRDRVGFALSHMRRKGGIR-VVVDDMYDWVHVDEKWFYVMKDGRGIYLHPEEDAP 522
            K S++   L +   + K+ YGS KD+A    +S  T+ R  K      A+G  +D+S    G  GR               NR+  ++S  + LS    SL R  K    + H    KP+L+++ ++ R+ F +S +            DMYD VH+DEKWF++ +  +  YL PEED P
Sbjct:   22 KRSVIFETLLKHSVNGKVKYGSIKDVANVYSVSTRTVSRIWKKGIACVANGVPVDISLNLSGNVGRKRIAINPEDVARIPLNRRTTIRSMASALSMSKTSLHRRVKEGSLKSHSNATKPMLTEENRKVRLQFCISMIDSSSSHNNPSFIDMYDCVHIDEKWFFLSRTSQKYYLLPEEDKP 201          
BLAST of mRNA_D-mesarthrocarpus_Contig10652.2.1 vs. uniprot
Match: UPI00188F83A1 (uncharacterized protein LOC119300137 n=2 Tax=Triticum dicoccoides TaxID=85692 RepID=UPI00188F83A1)

HSP 1 Score: 76.3 bits (186), Expect = 4.750e-13
Identity = 54/158 (34.18%), Postives = 78/158 (49.37%), Query Frame = 1
Query:  112 KDIAQECGISRTTIFRHLKTYDLQKADGQSMDMSRGRQGRCGRP--------------NRKWAVKS-----GTPLSSLWRLCKRVGARKHKRWVKPVLSDKQKRDRVGFALSHMRRK--GGIRVVVDDMYDWVHVDEKWFYVMKDGRGIYLHPEEDAP 522
            KD+A   G     I R  +T   QK  GQ +D+S  R+  CGR               N++  ++S     G   ++L++  K    R+H   VKPVL++K KRDRV F LS +     G +      M++ VH+DEKWF + K  R  YL P+E+ P
Sbjct:   67 KDVAAIFGAHVRVIQRIWETAMKQKGLGQEVDVSNKRKENCGRKSYDDILSLIPTIPLNKRSTIRSLAKALGVSPTTLYKKFKLNKIRRHSNRVKPVLTEKNKRDRVDFCLSMIDEATLGDVSPSFRSMHNIVHIDEKWFSMTKRKRNYYLLPDEEDP 224          
BLAST of mRNA_D-mesarthrocarpus_Contig10652.2.1 vs. uniprot
Match: A0A6D2JVH0_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JVH0_9BRAS)

HSP 1 Score: 75.9 bits (185), Expect = 6.040e-13
Identity = 50/176 (28.41%), Postives = 83/176 (47.16%), Query Frame = 1
Query:   55 VARCLERRGTSKKLPYGSGKDIAQECGISRTTIFRHLKTYDLQKADGQSMDMSRGRQGRCGRPN-------------------RKWAVKSGTPLSSLWRLCKRVGARKHKRWVKPVLSDKQKRDRVGFALSHMRRKG-GIRVVVDDMYDWVHVDEKWFYVMKDGRGIYLHPEEDAP 522
            V R L +R  +  L  G+ K++A    + + ++ +  +      ++G+++D+S  R+G+CGR                     R  AV      S++ R  K    R+H   +KP L D  K+ RV F LS + +     +    DM++ +H+DEKWFY+ K     YLHP E+ P
Sbjct:    9 VYRALLQRSNNGVLKRGTTKEVANLLAVPKQSVQKIWRRAKDNVSNGEAVDVSHRRKGKCGRKPKEIDLEQIFNIPLHCRTTMRSIAVVLEVSPSTIHRYVKHGLVRRHSNAIKPTLKDDNKKARVKFCLSMLDKNTFSHQPKFVDMFNIIHIDEKWFYMTKKSTTYYLHPLEEDP 184          
BLAST of mRNA_D-mesarthrocarpus_Contig10652.2.1 vs. uniprot
Match: W2NW41_PHYPR (HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NW41_PHYPR)

HSP 1 Score: 74.7 bits (182), Expect = 1.610e-12
Identity = 58/188 (30.85%), Postives = 86/188 (45.74%), Query Frame = 1
Query:   34 TPTKNSMVARCLERRGTSKKLPYGSGKDIAQECGISRTTIFR----HLKTYDLQKADGQSMDMSRGRQGRCGRP----------------NRKWAVKS-----GTPLSSLWRLCKRVGARKHKRWVKPVLSDKQKRDRVGFALSHMRRKGGIRVVVDDMYDWVHVDEKWFYVMKDGRGIYLHPEEDAP 522
            TPT+   +   L  R  + ++  G       +    R+TI R    H KT   Q  + +  +++ G  G CGR                 +R+  +KS     G   + + RL K    R+H   VKP L+++ +  RV FALSH  RK G  +V  DM+D VH+DEKWF    D +  YL  +E+ P
Sbjct:    7 TPTQRQTIVCFLLDRSDNGEISGGDISAAVAKYERHRSTISRLWELHKKT---QTEENRLGNLASGLIGNCGRKAIDTDELRLQIRKIPLSRRMTIKSLAAALGVSTTVIRRLLKEGAFRRHSSNVKPALTEENRLARVQFALSHTTRKRGGEMVFADMFDVVHIDEKWFNEDTDRKCYYLDADEEEP 191          
BLAST of mRNA_D-mesarthrocarpus_Contig10652.2.1 vs. uniprot
Match: A0A6P6VMR6_COFAR (uncharacterized protein LOC113724538 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6VMR6_COFAR)

HSP 1 Score: 72.4 bits (176), Expect = 3.650e-12
Identity = 53/183 (28.96%), Postives = 82/183 (44.81%), Query Frame = 1
Query:   34 TPTKNSMVARCLERRGTSKKLPYGSGKDIAQECGISRTTIFRHLKTYDLQKADGQSMDMSRGRQGRCGRPN-------------------RKWAVKSGTPLSSLWRLCKRVGARKHKRWVKPVLSDKQKRDRVGFALSHMRRKG-GIRVVVDDMYDWVHVDEKWFYVMKDGRGIYLHPEEDAP 522
            T  +  M+   L +     KL  G+ ++IA     S  T+ R  K   +   DG+ +D+SR    RCGR                     R  + +     S+L R  K    R H   +KP L+D+ K+ R+ F LS +  +          M++ VH+DEKWFY+ K+ +  YLHP+E+ P
Sbjct:   17 TNQERQMIFEALLQESNGGKLKRGTIRNIASLFKTSVRTVQRIWKLAAITSTDGR-VDVSRRFSKRCGRKRVDIDFTLIMAIPLRRRTNIRSLSSEMKVSKSTLHRRIKEGAIRPHSNALKPQLTDQNKQVRLNFCLSMLEPESLNSNPTFMSMFNVVHIDEKWFYMTKECKKYYLHPQEEEP 198          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10652.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397E722_9STRA3.850e-2031.50Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4ZZC0_9STRA4.060e-2032.18Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A5ATA6_9STRA5.570e-1829.63HTH_Tnp_Tc3_2 domain-containing protein (Fragment)... [more]
W4H8J1_9STRA1.820e-1630.96Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A8I6XKP1_HORVV6.210e-1432.91Uncharacterized protein n=4 Tax=Hordeum vulgare su... [more]
UPI00125D190E2.670e-1330.56uncharacterized protein LOC116027098 n=2 Tax=Ipomo... [more]
UPI00188F83A14.750e-1334.18uncharacterized protein LOC119300137 n=2 Tax=Triti... [more]
A0A6D2JVH0_9BRAS6.040e-1328.41Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
W2NW41_PHYPR1.610e-1230.85HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Ph... [more]
A0A6P6VMR6_COFAR3.650e-1228.96uncharacterized protein LOC113724538 n=2 Tax=Coffe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10652contigD-mesarthrocarpus_Contig10652:3592..4161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4565.Traes_1AS_03CAA5900.1
Model size522
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.16e-14
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae,3GG9M@35493|Streptophyta,3M2XW@4447|Liliopsida,3IN2T@38820|Poales
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789200.660331-CDS-D-mesarthrocarpus_Contig10652:3591..38371680789200.660331-CDS-D-mesarthrocarpus_Contig10652:3591..3837Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10652 3592..3837 +
1680789200.6775835-CDS-D-mesarthrocarpus_Contig10652:3885..41611680789200.6775835-CDS-D-mesarthrocarpus_Contig10652:3885..4161Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10652 3886..4161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10652.2.1prot_D-mesarthrocarpus_Contig10652.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10652 3592..4161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10652.2.1

>prot_D-mesarthrocarpus_Contig10652.2.1 ID=prot_D-mesarthrocarpus_Contig10652.2.1|Name=mRNA_D-mesarthrocarpus_Contig10652.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=174bp
VRKGVRGHDVDTPTKNSMVARCLERRGTSKKLPYGSGKDIAQECGISRTT
IFRHLKTYDLQKADGQSMDMSRGRQGRCGRPNRKWAVKSGTPLSSLWRLC
KRVGARKHKRWVKPVLSDKQKRDRVGFALSHMRRKGGIRVVVDDMYDWVH
VDEKWFYVMKDGRGIYLHPEEDAP
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10652:3592..4161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10652.2.1 ID=mRNA_D-mesarthrocarpus_Contig10652.2.1|Name=mRNA_D-mesarthrocarpus_Contig10652.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=570bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10652:3592..4161+ (Discosporangium mesarthrocarpum MT17_79)
GTTCGCAAGGGTGTGAGGGGCCATGATGTTGACACCCCGACGAAAAACTC CATGGTAGCACGCTGCTTGGAGAGGAGAGGGACCTCGAAGAAGCTACCTT ATGGGTCGGGGAAGGACATCGCACAGGAGTGTGGAATTTCCCGAACGACA ATTTTCCGTCATCTCAAGACGTACGACCTCCAGAAGGCAGATGGACAATC TATGGACATGTCCCGCGGGCGCCAGGGACGTTGTGGTCGCCCTAATGTGG TGACCGACCCGTGGGAAGTGCCTTCAATCAGGGGCACGTCGTAGCGCAAA TGGGCGGTCAAATCGGGGACCCCCCTCTCCTCGTTGTGGCGCCTGTGCAA GCGGGTGGGAGCGAGGAAGCACAAACGGTGGGTCAAGCCGGTGCTGTCGG ATAAGCAGAAGCGTGATAGGGTGGGTTTTGCGCTGAGCCACATGCGCAGG AAGGGAGGAATTAGGGTGGTGGTGGACGACATGTACGACTGGGTCCATGT GGATGAGAAGTGGTTCTACGTGATGAAGGACGGGAGGGGAATCTACCTGC ACCCAGAAGAGGACGCCCCC
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10652:3592..4161+

>mRNA_D-mesarthrocarpus_Contig10652.2.1 ID=mRNA_D-mesarthrocarpus_Contig10652.2.1|Name=mRNA_D-mesarthrocarpus_Contig10652.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=522bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10652:3592..4161+ (Discosporangium mesarthrocarpum MT17_79)
GTTCGCAAGGGTGTGAGGGGCCATGATGTTGACACCCCGACGAAAAACTC
CATGGTAGCACGCTGCTTGGAGAGGAGAGGGACCTCGAAGAAGCTACCTT
ATGGGTCGGGGAAGGACATCGCACAGGAGTGTGGAATTTCCCGAACGACA
ATTTTCCGTCATCTCAAGACGTACGACCTCCAGAAGGCAGATGGACAATC
TATGGACATGTCCCGCGGGCGCCAGGGACGTTGTGGTCGCCCTAATCGCA
AATGGGCGGTCAAATCGGGGACCCCCCTCTCCTCGTTGTGGCGCCTGTGC
AAGCGGGTGGGAGCGAGGAAGCACAAACGGTGGGTCAAGCCGGTGCTGTC
GGATAAGCAGAAGCGTGATAGGGTGGGTTTTGCGCTGAGCCACATGCGCA
GGAAGGGAGGAATTAGGGTGGTGGTGGACGACATGTACGACTGGGTCCAT
GTGGATGAGAAGTGGTTCTACGTGATGAAGGACGGGAGGGGAATCTACCT
GCACCCAGAAGAGGACGCCCCC
back to top