mRNA_D-mesarthrocarpus_Contig1065.2.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1065.2.2
Unique NamemRNA_D-mesarthrocarpus_Contig1065.2.2
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1065.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1065contigD-mesarthrocarpus_Contig1065:645..1954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size589
Hectar predicted targeting categorysignal peptide
Exons3
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789200.3993902-CDS-D-mesarthrocarpus_Contig1065:644..7251680789200.3993902-CDS-D-mesarthrocarpus_Contig1065:644..725Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1065 645..725 -
1680789200.409853-CDS-D-mesarthrocarpus_Contig1065:958..11981680789200.409853-CDS-D-mesarthrocarpus_Contig1065:958..1198Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1065 959..1198 -
1680789200.4239898-CDS-D-mesarthrocarpus_Contig1065:1688..19341680789200.4239898-CDS-D-mesarthrocarpus_Contig1065:1688..1934Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1065 1689..1934 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789200.433534-UTR-D-mesarthrocarpus_Contig1065:1934..19541680789200.433534-UTR-D-mesarthrocarpus_Contig1065:1934..1954Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1065 1935..1954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1065.2.2prot_D-mesarthrocarpus_Contig1065.2.2Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1065 645..1934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1065.2.2

>prot_D-mesarthrocarpus_Contig1065.2.2 ID=prot_D-mesarthrocarpus_Contig1065.2.2|Name=mRNA_D-mesarthrocarpus_Contig1065.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=189bp
MEHKPMTGVRRTRRGTMVFVLFTLAVPAVGFHPPFGVVDTKATGLAGQGE
KHKICRIDHRPKVLREGFTLGVHSEGGGGDDESFPGFEHGARRYLNREVV
ENAVGGSTSGAEEWTPDLCKKRTGVLQRKLRQIQTLRVQHTRDPTSLNDD
QLAKIERKDDIKREIAELEILRRKLEKGTRSNAGVEKDG
back to top

mRNA from alignment at D-mesarthrocarpus_Contig1065:645..1954-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1065.2.2 ID=mRNA_D-mesarthrocarpus_Contig1065.2.2|Name=mRNA_D-mesarthrocarpus_Contig1065.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1310bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1065:645..1954- (Discosporangium mesarthrocarpum MT17_79)
GGCGGAAGCCACCAACAACAATGGAGCACAAGCCAATGACAGGGGTACGG
CGTACCCGGCGAGGTACGATGGTTTTTGTTCTTTTTACTCTCGCAGTACC
TGCGGTGGGTTTCCATCCACCGTTCGGCGTCGTTGATACGAAAGCCACGG
GCCTAGCAGGACAAGGGGAAAAGCACAAGATATGTAGGATCGACCACCGT
CCAAAGGTGCTGAGAGAGGGATTCACGCTTGGAGTACATTCGGAGGGGGG
CGGGGGGGATGATGAGGTGAGTTAAGAGAAGTGGAAGCCCTCCGGACCGC
CGAGTTCAGTGGAGTGGTTTCGAGGATGATCGAGGTTATCATCGTGCACA
ATCAGGTCTGTCTCCCTCATAGGTGTGACAGTGCTGTAATTTGACATACC
ATTTCTGACAGGTTGATTAATGACAACCCCCGAGGTTTTGGTTTCGAGAG
GAGTGTCCCCCCCAGTCGTCATCATGTCCATAGTCCACAACCTATGTGAC
AGCCTCTTGTTGCAGTTTATTATTGCAATTGACGCGAGGGTGTGCCTACA
GTAAAGAGCTTTGAAAGTCCCATATGTTAGTGTGGGATTCACGTAGCCAA
CCTTGTTGATTGAAGGATGGGCTTCTACTGGACCTAGTAATGTGGTTAGC
ATGAAGGTTTGCTTGATATGCCCTCTACGTGCTGTCGCACCCGATGCCTA
GCCTCAAATCGACAGCGGGCTTCTTCTCGTTTCCCTATTTCGGTGCCCTT
CGGCAGTCCTTCCCTGGGTTTGAGCACGGCGCGAGACGGTACTTGAACAG
GGAAGTGGTTGAAAACGCTGTGGGGGGGAGCACCAGCGGTGCAGAGGAAT
GGACTCCTGATCTGTGTAAGAAACGGACTGGCGTTTTACAACGCAAGCTC
AGGCAGATCCAGACCTTGCGGGTGCAACATACACGGGACCCGACGTCATT
AAATGATGACCAGCTGGCCAAGATTGAACGGAAGGACGACATAAAGGCGC
GTAATGTACTTCCCCCCCCCTATGTTCACCCTTTGCTGAGTCGATTTACT
ATTGAGGGCCTAATGTCTCACGGCTTAGAGCTATGCTTTTTTTTGTTTGT
AGGCCATCTGTAACAATCCGACTTCGAGCTCTAGACACGGCACCCCCAGA
TGATGCTGAACTAAGGTGAGGAGACCCAGGCCGGCTTACTCCGAGTACCC
CCCCTTATCGGATCCCTTCCCCCATCCAGCGTGAGATAGCGGAATTAGAG
ATCCTGAGGAGAAAGCTGGAGAAGGGGACCCGATCCAATGCAGGTGTTGA
AAAAGATGGA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1065:645..1954-

>mRNA_D-mesarthrocarpus_Contig1065.2.2 ID=mRNA_D-mesarthrocarpus_Contig1065.2.2|Name=mRNA_D-mesarthrocarpus_Contig1065.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=567bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1065:645..1954- (Discosporangium mesarthrocarpum MT17_79)
ATGGAGCACAAGCCAATGACAGGGGTACGGCGTACCCGGCGAGGTACGAT
GGTTTTTGTTCTTTTTACTCTCGCAGTACCTGCGGTGGGTTTCCATCCAC
CGTTCGGCGTCGTTGATACGAAAGCCACGGGCCTAGCAGGACAAGGGGAA
AAGCACAAGATATGTAGGATCGACCACCGTCCAAAGGTGCTGAGAGAGGG
ATTCACGCTTGGAGTACATTCGGAGGGGGGCGGGGGGGATGATGAGTCCT
TCCCTGGGTTTGAGCACGGCGCGAGACGGTACTTGAACAGGGAAGTGGTT
GAAAACGCTGTGGGGGGGAGCACCAGCGGTGCAGAGGAATGGACTCCTGA
TCTGTGTAAGAAACGGACTGGCGTTTTACAACGCAAGCTCAGGCAGATCC
AGACCTTGCGGGTGCAACATACACGGGACCCGACGTCATTAAATGATGAC
CAGCTGGCCAAGATTGAACGGAAGGACGACATAAAGCGTGAGATAGCGGA
ATTAGAGATCCTGAGGAGAAAGCTGGAGAAGGGGACCCGATCCAATGCAG
GTGTTGAAAAAGATGGA
back to top