mRNA_D-mesarthrocarpus_Contig10636.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10636.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10636.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10636.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10636contigD-mesarthrocarpus_Contig10636:2166..2924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog497964.CfE428DRAFT_5961
PFAMsBig_3_2,DUF11,HemolysinCabind
Model size759
Max annot lvl2|Bacteria
KEGG koko:K13735,ko:K15125,ko:K20276
KEGG Pathwayko02024,ko05100,ko05133,map02024,map05100,map05133
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.23e-05
EggNOG OGsCOG2931@1|root,COG3210@1|root,COG4932@1|root,COG2931@2|Bacteria,COG3210@2|Bacteria,COG4932@2|Bacteria
Descriptiondomain protein
Cds size759
COG categoryM
BRITEko00000,ko00001,ko00536
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789199.335799-CDS-D-mesarthrocarpus_Contig10636:2165..29241680789199.335799-CDS-D-mesarthrocarpus_Contig10636:2165..2924Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10636 2166..2924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10636.1.1prot_D-mesarthrocarpus_Contig10636.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10636 2166..2924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10636.1.1

>prot_D-mesarthrocarpus_Contig10636.1.1 ID=prot_D-mesarthrocarpus_Contig10636.1.1|Name=mRNA_D-mesarthrocarpus_Contig10636.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=253bp
VGNIPLTVGPILVAEGMTLRISGAVPVNGTGAGATIDGQSLSGLFDVAAG
GTLHLEAVTLKNGSALTTGGAISATQATIFLNDCDVISNSANSFGGGVWA
DRSTVSVTGGSFIDNASSGQGGAIALFSSNLTMTDSVVEGNEAFTGGGIH
VLGVRGSPWEGTTCMFERCTFSDNNATIPSDATRFPGSAFDPISGGGAVF
SRYADLTVDNCTFSGNEAMAGGGALNTVFSNLTVTGCKFHDNMSGIAGAG
AYI
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mRNA from alignment at D-mesarthrocarpus_Contig10636:2166..2924-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10636.1.1 ID=mRNA_D-mesarthrocarpus_Contig10636.1.1|Name=mRNA_D-mesarthrocarpus_Contig10636.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=759bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10636:2166..2924- (Discosporangium mesarthrocarpum MT17_79)
GTTGGCAACATTCCATTGACAGTGGGACCAATACTAGTTGCAGAAGGCAT
GACATTGCGCATCTCCGGAGCCGTTCCTGTGAATGGAACCGGAGCGGGAG
CCACCATCGACGGCCAATCTCTCTCAGGACTCTTCGACGTGGCAGCTGGT
GGAACACTCCATCTCGAGGCGGTGACTCTTAAGAATGGATCGGCTTTGAC
CACAGGCGGTGCGATAAGCGCGACCCAGGCGACAATCTTCCTCAATGACT
GTGACGTCATATCCAACAGTGCGAACTCATTCGGCGGGGGGGTCTGGGCT
GACCGAAGCACCGTCTCCGTAACTGGCGGTTCTTTCATCGACAACGCCTC
GTCCGGACAAGGCGGAGCCATTGCCCTATTCAGTTCTAATCTCACCATGA
CCGACTCAGTTGTTGAAGGGAACGAGGCCTTTACGGGGGGTGGTATCCAT
GTCTTGGGTGTGCGTGGTTCCCCATGGGAAGGCACGACCTGCATGTTCGA
AAGATGCACGTTCTCGGACAACAATGCAACCATCCCCAGCGACGCGACCA
GATTTCCCGGATCCGCGTTTGATCCAATCTCGGGTGGGGGGGCTGTGTTC
AGCAGATATGCCGATCTCACCGTGGACAACTGCACCTTCAGCGGTAACGA
GGCTATGGCCGGGGGGGGCGCCTTAAACACCGTGTTTAGCAATTTGACCG
TGACCGGGTGCAAATTCCATGATAATATGTCAGGGATAGCGGGAGCTGGA
GCCTATATT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10636:2166..2924-

>mRNA_D-mesarthrocarpus_Contig10636.1.1 ID=mRNA_D-mesarthrocarpus_Contig10636.1.1|Name=mRNA_D-mesarthrocarpus_Contig10636.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=759bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10636:2166..2924- (Discosporangium mesarthrocarpum MT17_79)
GTTGGCAACATTCCATTGACAGTGGGACCAATACTAGTTGCAGAAGGCAT
GACATTGCGCATCTCCGGAGCCGTTCCTGTGAATGGAACCGGAGCGGGAG
CCACCATCGACGGCCAATCTCTCTCAGGACTCTTCGACGTGGCAGCTGGT
GGAACACTCCATCTCGAGGCGGTGACTCTTAAGAATGGATCGGCTTTGAC
CACAGGCGGTGCGATAAGCGCGACCCAGGCGACAATCTTCCTCAATGACT
GTGACGTCATATCCAACAGTGCGAACTCATTCGGCGGGGGGGTCTGGGCT
GACCGAAGCACCGTCTCCGTAACTGGCGGTTCTTTCATCGACAACGCCTC
GTCCGGACAAGGCGGAGCCATTGCCCTATTCAGTTCTAATCTCACCATGA
CCGACTCAGTTGTTGAAGGGAACGAGGCCTTTACGGGGGGTGGTATCCAT
GTCTTGGGTGTGCGTGGTTCCCCATGGGAAGGCACGACCTGCATGTTCGA
AAGATGCACGTTCTCGGACAACAATGCAACCATCCCCAGCGACGCGACCA
GATTTCCCGGATCCGCGTTTGATCCAATCTCGGGTGGGGGGGCTGTGTTC
AGCAGATATGCCGATCTCACCGTGGACAACTGCACCTTCAGCGGTAACGA
GGCTATGGCCGGGGGGGGCGCCTTAAACACCGTGTTTAGCAATTTGACCG
TGACCGGGTGCAAATTCCATGATAATATGTCAGGGATAGCGGGAGCTGGA
GCCTATATT
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