mRNA_D-mesarthrocarpus_Contig10633.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10633.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10633.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10633.1.1 vs. uniprot
Match: D8LI42_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI42_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 2.470e-68
Identity = 148/316 (46.84%), Postives = 179/316 (56.65%), Query Frame = 1 
Query:   94 LSSWVHDSPPVLDVDAGGVAGVPSPLYLGREKNMRNVCTRALHPDWFISLLETCGEEAGLAWVFRLLAALLQSSDIFVERFQSAGGFRTMAASLPPFSTSLPVLLPALALALGVPIRELPPTAEGMGPQSVLSLLRKNAGIAPGPGGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSPPQPFVRLCVAEVLLPALRVNTAIV-------------AAEEDRAXXXXXXXXXXGAEVGDEGEAG------------RAAMVNKVVLAAFWEAHESDPAFALICRSPEVVGAMVDALGGRWDLKPEEGAGGG 966
            L  WV   PPV+DV     +G+PSPLY GR +  + VC+RAL  DWFISLLETC EEAG+AW FRLLAA+LQSS+ F   F+ A GFR MA  LP ++ SLPVLLPALALALGVP+  LP TAEGM   S+LSLLR+NAG A GPG  +                                D+ P+PFVR+C+A V+LP LRVN A++             AA E             GAE    G A             RA  VN+++ AA WEA  +DP+F L CRSP +V A+VD LGG WD +PE G  GG
Sbjct: 2500 LERWVDGVPPVVDVVEADGSGLPSPLYAGRHRQFKTVCSRALRADWFISLLETCQEEAGVAWTFRLLAAMLQSSEEFGSSFREADGFRAMAVCLPRYAASLPVLLPALALALGVPVAALPATAEGMDVISILSLLRRNAGTAHGPGRCAGGGMAPRGGG----------------------DTEPRPFVRVCLARVILPCLRVNAALLRRAEAAGVVPTTAAAAESSPSQAPPSPSGDGAEKTSPGVAATASATADVSDWRRAKRVNELMSAAMWEALMNDPSFRLTCRSPGIVAALVDVLGGTWD-EPEGGLLGG 2792
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BLAST of mRNA_D-mesarthrocarpus_Contig10633.1.1 vs. uniprot
Match: A0A6H5KQH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH9_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 1.180e-67
Identity = 143/309 (46.28%), Postives = 175/309 (56.63%), Query Frame = 1 
Query:   94 LSSWVHDSPPVLDVDAGGVAGVPSPLYLGREKNMRNVCTRALHPDWFISLLETCGEEAGLAWVFRLLAALLQSSDIFVERFQSAGGFRTMAASLPPFSTSLPVLLPALALALGVPIRELPPTAEGMGPQSVLSLLRKNAGIAPGPGGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSPPQPFVRLCVAEVLLPALRVNTAIVAAEEDRAXXXXXXXXXXGAEV------------------GDEGEAGRAAMVNKVVLAAFWEAHESDPAFALICRSPEVVGAMVDALGGRWDLKPEEGAGGG 966
            L  WV   PPV+DV     +G+PSPLY GR +  + VC+RAL  DWFISLLETC EEAG+AW FRLLAA+LQSS+ F   F+ A GFR MA  LP ++ SLPVLLPALALALGVP+  LP TAEGM   S+LSLLR+NAG A GPG  +                                D+ P+PFVR+C+A V+LP LRVN A++   E                                    D  +  RA  VN+++ AA WEA  +DP+F L CRSP +V A+VD LGG WD +PEEG  GG
Sbjct: 2789 LERWVDGVPPVVDVVEADGSGLPSPLYAGRHRQFKTVCSRALRADWFISLLETCQEEAGVAWTFRLLAAMLQSSEEFGSSFRDADGFRAMAVCLPRYAASLPVLLPALALALGVPVAALPATAEGMDAISILSLLRRNAGTAHGPGRCAGGGMAPRGGG----------------------DTEPRPFVRVCLARVILPCLRVNAALLRRAEAAGVVPTTAAAPPSXXXXXXXXXXXXXXXXXXXXXADVSDWRRAKRVNELMSAAMWEALMNDPSFRLTCRSPGIVAALVDVLGGTWD-EPEEGLLGG 3074
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BLAST of mRNA_D-mesarthrocarpus_Contig10633.1.1 vs. uniprot
Match: W7TSW7_9STRA (Wd repeat and fyve domain-containing protein 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSW7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.990e-6
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:  169 LYLGREKNMRNVCTRALHPDWFISLLETCGEEAGLAWVFRLLAALLQSSDIFVERFQSAG-GFRTMAASLPPFSTSLPVLLPALALALGVPIRELP 453
            L+   +  +    +R + PDWF ++L +C +   ++   R L  L Q  D FV  F     GF T+ + LP  S S  VL+P LA+ LGVP+ +LP
Sbjct: 2000 LFREDDHEISKALSRCMSPDWFHAVLASCRDALSISLTLRALFILFQERDDFVVAFSEYDTGFVTLGSFLPSISASPVVLMPLLAVILGVPMVQLP 2095
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10633.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LI42_ECTSI2.470e-6846.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQH9_9PHAE1.180e-6746.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TSW7_9STRA1.990e-635.42Wd repeat and fyve domain-containing protein 3 n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10633contigD-mesarthrocarpus_Contig10633:406..2137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LI42
Model size990
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.05e-69
EggNOG OGs2E8XM@1|root,2SFC4@2759|Eukaryota
Cds size990
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789199.222691-CDS-D-mesarthrocarpus_Contig10633:405..6691680789199.222691-CDS-D-mesarthrocarpus_Contig10633:405..669Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10633 406..669 +
1680789199.2344277-CDS-D-mesarthrocarpus_Contig10633:1411..21371680789199.2344277-CDS-D-mesarthrocarpus_Contig10633:1411..2137Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10633 1412..2137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10633.1.1prot_D-mesarthrocarpus_Contig10633.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10633 406..2137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10633.1.1

>prot_D-mesarthrocarpus_Contig10633.1.1 ID=prot_D-mesarthrocarpus_Contig10633.1.1|Name=mRNA_D-mesarthrocarpus_Contig10633.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=330bp
GKGNQAGAEGGEGEGEWGGEGRGLWGGVGVGLSSWVHDSPPVLDVDAGGV
AGVPSPLYLGREKNMRNVCTRALHPDWFISLLETCGEEAGLAWVFRLLAA
LLQSSDIFVERFQSAGGFRTMAASLPPFSTSLPVLLPALALALGVPIREL
PPTAEGMGPQSVLSLLRKNAGIAPGPGGSSSPSGSSGGSAGSSARGGYQS
EGGGGRGGGGGEDSPPQPFVRLCVAEVLLPALRVNTAIVAAEEDRARARA
RAGVGTGAEVGDEGEAGRAAMVNKVVLAAFWEAHESDPAFALICRSPEVV
GAMVDALGGRWDLKPEEGAGGGGWGINVPR
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mRNA from alignment at D-mesarthrocarpus_Contig10633:406..2137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10633.1.1 ID=mRNA_D-mesarthrocarpus_Contig10633.1.1|Name=mRNA_D-mesarthrocarpus_Contig10633.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1732bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10633:406..2137+ (Discosporangium mesarthrocarpum MT17_79)
GGTAAAGGGAATCAAGCAGGGGCAGAGGGAGGGGAGGGGGAAGGGGAGTG
GGGAGGAGAAGGCAGAGGGCTTTGGGGAGGAGTGGGGGTGGGGCTGAGCT
CGTGGGTGCATGACTCGCCACCCGTGCTGGATGTGGATGCAGGTGGGGTG
GCAGGGGTGCCAAGCCCGCTCTACTTGGGGAGGGAGAAGAACATGCGCAA
TGTCTGCACCAGGGCACTGCACCCCGACTGGTTTATCTCCCTGCTTGAGA
CGTGCGGGGAGGAGGTGGGGTGGGGTGGGCGTGTGTTGCTGTGTGTGGGA
GTGCGTGCAGAAATTGGGACAAGACGAAAGAGATAAGACAGACAGAAAAC
AGGTTTTGCAACGGTTACGCTTTTTTTTGTTCTCTCTGACCTCTGATGAT
GATGGCCATGCATGACATCAGCAGTTGGGTGGTGTGCGTTGCCAATAAGG
TGTAGTTGGTGGGCAGTGTTGAGGGGTGGGGTTGGGATGCACTTTGTTGC
TAAGGACGGAGTGAACGGGAGGGAAAGCACATTGAGGTGCTGGACTCAGA
AGGTATTCAACACCCCACTGAAGAAATACAGACTCTTTTTTCTTCAGTTC
GCCTGATGGCTCTTTTCATTGGGGCTTCCTTGGAGCCATGTCTGTTGTCA
TCACTTCTAGAGTATGTAATGCATGATGTATAGTACTATGTTAGGGTTAG
GGTTAGGGATAGGGTCTTTGTACTCCTTTACTTGCAGCGCCAGGCTGCAG
TGCATTGGCCGCTGGAGGAATTGGCTATGAGGATGTTGCATCTCAGAGCT
CCATCGCAGGGTGTTCGGCTATAAAGGGGTTATGGTTCCTCCCCTTCCCT
CCCACGCAAAAGCACCATCCACCGCACCTCTGCTGTTCTCTTACCTTAGA
CCTCCCCGCCCCAACCCCCCCCCCCCCAAACCCCCAACCCCCCTTATATT
TATACAGTTCACTCCTCCCTACCACCCCCTGTGACCCCACCGTCATGATG
ACCCAGGCTGGCCTGGCGTGGGTCTTCCGGCTCCTGGCAGCACTTCTCCA
GTCCTCAGACATCTTCGTAGAGCGCTTCCAAAGTGCTGGCGGCTTCCGCA
CCATGGCAGCCTCCCTGCCCCCCTTCTCCACCTCCCTCCCTGTCCTCCTC
CCCGCCCTTGCCCTTGCCCTTGGTGTGCCCATCCGCGAGCTCCCACCCAC
TGCTGAGGGCATGGGGCCCCAGAGTGTGCTCTCTCTCCTACGGAAAAACG
CTGGCATTGCCCCAGGGCCAGGGGGCAGCAGTTCCCCTAGCGGCTCCTCT
GGCGGCTCCGCTGGCAGCAGCGCCCGCGGAGGCTACCAGTCCGAGGGCGG
CGGTGGCAGAGGAGGGGGGGGGGGTGAGGATTCACCCCCACAGCCTTTTG
TCCGGCTCTGTGTGGCAGAGGTGCTGCTGCCAGCGCTCCGTGTCAACACT
GCAATAGTCGCCGCCGAGGAAGATAGGGCCAGGGCCCGGGCTAGGGCAGG
GGTGGGGACAGGGGCAGAGGTGGGGGATGAAGGCGAGGCCGGGCGAGCAG
CAATGGTCAATAAGGTGGTTCTAGCAGCATTTTGGGAGGCCCATGAGAGT
GACCCTGCATTTGCACTCATATGCCGCTCTCCTGAAGTTGTGGGGGCTAT
GGTGGATGCTCTGGGCGGACGCTGGGACCTGAAGCCAGAAGAGGGCGCTG
GAGGAGGGGGCTGGGGCATTAATGTCCCACGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10633:406..2137+

>mRNA_D-mesarthrocarpus_Contig10633.1.1 ID=mRNA_D-mesarthrocarpus_Contig10633.1.1|Name=mRNA_D-mesarthrocarpus_Contig10633.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=990bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10633:406..2137+ (Discosporangium mesarthrocarpum MT17_79)
GGTAAAGGGAATCAAGCAGGGGCAGAGGGAGGGGAGGGGGAAGGGGAGTG
GGGAGGAGAAGGCAGAGGGCTTTGGGGAGGAGTGGGGGTGGGGCTGAGCT
CGTGGGTGCATGACTCGCCACCCGTGCTGGATGTGGATGCAGGTGGGGTG
GCAGGGGTGCCAAGCCCGCTCTACTTGGGGAGGGAGAAGAACATGCGCAA
TGTCTGCACCAGGGCACTGCACCCCGACTGGTTTATCTCCCTGCTTGAGA
CGTGCGGGGAGGAGGCTGGCCTGGCGTGGGTCTTCCGGCTCCTGGCAGCA
CTTCTCCAGTCCTCAGACATCTTCGTAGAGCGCTTCCAAAGTGCTGGCGG
CTTCCGCACCATGGCAGCCTCCCTGCCCCCCTTCTCCACCTCCCTCCCTG
TCCTCCTCCCCGCCCTTGCCCTTGCCCTTGGTGTGCCCATCCGCGAGCTC
CCACCCACTGCTGAGGGCATGGGGCCCCAGAGTGTGCTCTCTCTCCTACG
GAAAAACGCTGGCATTGCCCCAGGGCCAGGGGGCAGCAGTTCCCCTAGCG
GCTCCTCTGGCGGCTCCGCTGGCAGCAGCGCCCGCGGAGGCTACCAGTCC
GAGGGCGGCGGTGGCAGAGGAGGGGGGGGGGGTGAGGATTCACCCCCACA
GCCTTTTGTCCGGCTCTGTGTGGCAGAGGTGCTGCTGCCAGCGCTCCGTG
TCAACACTGCAATAGTCGCCGCCGAGGAAGATAGGGCCAGGGCCCGGGCT
AGGGCAGGGGTGGGGACAGGGGCAGAGGTGGGGGATGAAGGCGAGGCCGG
GCGAGCAGCAATGGTCAATAAGGTGGTTCTAGCAGCATTTTGGGAGGCCC
ATGAGAGTGACCCTGCATTTGCACTCATATGCCGCTCTCCTGAAGTTGTG
GGGGCTATGGTGGATGCTCTGGGCGGACGCTGGGACCTGAAGCCAGAAGA
GGGCGCTGGAGGAGGGGGCTGGGGCATTAATGTCCCACGG
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