mRNA_D-mesarthrocarpus_Contig1063.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1063.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig1063.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1063.3.1 vs. uniprot
Match: W2QAD0_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QAD0_PHYPN)

HSP 1 Score: 70.5 bits (171), Expect = 3.140e-10
Identity = 60/176 (34.09%), Postives = 81/176 (46.02%), Query Frame = 1
Query:    1 IKPLLSHEQNINRVDFVWSHMHRRGLSEVLVDDMYDWV--DETWFYVMKDGTGVYLPPKENKP*PLRAQNKH*SPSTYSLAVAWP-YDLHW--------GVVQW*DRYLAYCESCAGEGGQQKLQEGNSDHEINHGQGERYKKLMIEEVIPAIKARMPRL-PGHTIFVQQDGPKPH 492
            +KP L+ E  + RV F  SH  R+   EV+  DM+D V  DE WF    D    YL   E +P   R   +  S + +  AVA P YD H         G+  + + Y A   S     G   L+       +     E YK  +I ++IPAIKA+ PR     TI++QQD  KPH
Sbjct:   33 VKPALTEENRLARVQFELSHTTRKRGGEVVFADMFDVVHIDEKWFNEDTDRKCYYLDADEEEPVRQRQSKRFISKTMFIAAVARPRYDAHRKQAFDGKIGIWAFAEEYEAKRTSKNRPKGTIVLRN------VESVDREAYKATLIGDIIPAIKAKWPRSGKKRTIYIQQDNAKPH 202          
BLAST of mRNA_D-mesarthrocarpus_Contig1063.3.1 vs. uniprot
Match: W4GWE0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GWE0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.410e-10
Identity = 55/189 (29.10%), Postives = 86/189 (45.50%), Query Frame = 1
Query:    1 IKPLLSHEQNINRVDFVWSHMHRRGLSEVLVDDMYDWV--DETWFYVMKDGTGVYLPPKENKP*PLRAQNKH*SPSTYSLAVAWPYDLHWGVVQW*DRYLA---YCESCAGEGGQQKLQEGNSDHEINHGQGERYKKLMIEEVIPAIKARMPRLPGHTIFVQQDGPKPHT---GKGVMEAIQ-DAWEMT 540
            ++PLL+      RV +V  H+H    ++   DDM + V  DE WF+  K    +YL P E  P       ++ +   +  AVA P  +    V W D  +    + E    E   +    G    +      + Y+K++I+ VIPAIKA+ PR     I +QQD  +PH       ++EA   D W+M+
Sbjct:   76 VRPLLTDANKAVRVQWVMKHLHALSSAQYAFDDMMNTVHVDEKWFFATKISKKMYLAPGEEPPHRTCKSKRYITKVMFLSAVARPRWVD-DEVGWFDGKIGTWHFTERVPAERSSRNRAAGTLVTKPVSVTQDIYRKMLIDNVIPAIKAKWPRNSSRCITIQQDNARPHVPPLDARIVEACHSDRWDMS 263          
BLAST of mRNA_D-mesarthrocarpus_Contig1063.3.1 vs. uniprot
Match: W2NW41_PHYPR (HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NW41_PHYPR)

HSP 1 Score: 68.6 bits (166), Expect = 1.870e-9
Identity = 59/176 (33.52%), Postives = 80/176 (45.45%), Query Frame = 1
Query:    1 IKPLLSHEQNINRVDFVWSHMHRRGLSEVLVDDMYDWV--DETWFYVMKDGTGVYLPPKENKP*PLRAQNKH*SPSTYSLAVAWP-YDLHW--------GVVQW*DRYLAYCESCAGEGGQQKLQEGNSDHEINHGQGERYKKLMIEEVIPAIKARMPRL-PGHTIFVQQDGPKPH 492
            +KP L+ E  + RV F  SH  R+   E++  DM+D V  DE WF    D    YL   E +P   R   +  S + +  AVA P YD H         G+  + + Y A   S     G   L+       +     E YK   I ++IPAIKA+ PR     TI++QQD  KPH
Sbjct:  129 VKPALTEENRLARVQFALSHTTRKRGGEMVFADMFDVVHIDEKWFNEDTDRKCYYLDADEEEPVRQRQSKRFISKTMFIAAVARPRYDAHRKQAFDGKIGIWAFAEEYEAKRTSKNRPKGTIVLRN------VESVDREAYKATHIGDIIPAIKAKWPRSGKKRTIYIQQDNAKPH 298          
BLAST of mRNA_D-mesarthrocarpus_Contig1063.3.1 vs. uniprot
Match: A0A448ZNT1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNT1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.160e-7
Identity = 48/171 (28.07%), Postives = 77/171 (45.03%), Query Frame = 1
Query:    4 KPLLSHEQNINRVDFVWSHMHRRGLSEVLVDDMYDWV--DETWFYVMKDGTGVYLPPKENKP*PLRAQNKH*SPSTYSLAVAWPYDLHWGV--VQW*DRYLAYCESCAGEGGQQKL---QEGNSDHEINHGQGERYKKLMIEEVIPAIKARMPRLPGHT-IFVQQDGPKPH 492
            KPLL+ +  + RV+++  H+   G      DD + W+  DE WFY+ +     YL P E +P        H +   +  A A P    W      W D  +        E  ++      +G    +  +  GE YK++++E+V+PAI  + PR      IF+Q+D  KPH
Sbjct:  234 KPLLTAKNKLKRVEWILEHIDDNGR----FDDWFKWIHIDEKWFYLKRTKQTTYLLPGEAEPKSTSKSKNHMTKVMFLCATARP---RWDTNNCAWFDGKIGIWPFVVKEPAKRSSVNRPKGTLVTKPQNVDGEVYKRMLLEKVLPAIYEKWPRGSSTPEIFIQEDNAKPH 397          
BLAST of mRNA_D-mesarthrocarpus_Contig1063.3.1 vs. uniprot
Match: W2QKX2_PHYPN (HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QKX2_PHYPN)

HSP 1 Score: 60.5 bits (145), Expect = 8.750e-7
Identity = 55/168 (32.74%), Postives = 75/168 (44.64%), Query Frame = 1
Query:    1 IKPLLSHEQNINRVDFVWSHMHRRGLSEVLVDDMYDWV--DETWFYVMKDGTGVYLPPKENKP*PLRAQNKH*SPSTYSLAVAWP-YDLHWGVVQW*DRYLAYCESCAGEGGQQKLQEGNSDHEINHGQGERYKKLMIEEVIPAIKARMPRL-PGHTIFVQQDGPKPH 492
            +KP L+ E  + RV F  SH  R+   E++  DM+D V  DE  F    D    YL   E +P   R   +    + +  AVA P YD H    Q  D  +          G   L+       +     E YK  +I ++IPAIKA+ PR     TI++QQD  KPH
Sbjct:  129 VKPALTEENRLARVQFALSHTTRKRGGEMVFADMFDVVHIDEKRFNEDTDRKCYYLDANEEEPVRQRQSKRFICKTMFIAAVARPRYDAH--RKQAFDGTIGIWAFAEEPKGIIVLRN------VESVDREAYKATLIGDIIPAIKAKWPRSGKKRTIYIQQDNAKPH 288          
BLAST of mRNA_D-mesarthrocarpus_Contig1063.3.1 vs. uniprot
Match: A0A0W8C4B7_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C4B7_PHYNI)

HSP 1 Score: 59.3 bits (142), Expect = 1.780e-6
Identity = 52/182 (28.57%), Postives = 85/182 (46.70%), Query Frame = 1
Query:    4 KPLLSHEQNINRVDFVWSHMHRRGLSEVLVDDMYDWV--DETWFYVMKDGTGVYL------PPKENKP*PLRAQNKH*SPSTYSLAVAWP---YDLHWGVVQW*DRYLAYCESCAGEGGQQKLQEGNSDHEINHGQGERYKKLMIEEVIPAIKARMPRLPGH--------TIFVQQDGPKPH 492
            +PLL+ +   +R+ +   H+ +    + +   MYD V  DE WFYV K G  VYL       P E+ P       +H     +  AVA P   +D   G+    ++Y+    S   + G ++L+  +   E+       Y+++++E+VIPAIKA+   +            I+VQQD  KPH
Sbjct:   19 RPLLTEKHKTDRLKWCLLHVTQSTDRQPVFAPMYDTVHVDEKWFYVKKIGQKVYLLTGQDGTPCEDAPVQFVQSKRHILKVMFLCAVARPRGNWDGKVGMWPVVEKYVTQRRSVNRDAGVEELRPISMTREV-------YRRMLLEDVIPAIKAKWEWVRDEGLGVPLVSPIWVQQDNAKPH 193          
BLAST of mRNA_D-mesarthrocarpus_Contig1063.3.1 vs. uniprot
Match: A0A6A3XBC6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3XBC6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.190e-6
Identity = 48/175 (27.43%), Postives = 81/175 (46.29%), Query Frame = 1
Query:    4 KPLLSHEQNINRVDFVWSHMHRRGLSEVLVDDMYDWV--DETWFYVMKDGTGVYL------PPKENKP*PLRAQNKH*SPSTYSLAVAWP---YDLHWGVVQW*DRYLAYCESCAGEGGQQKLQEGNSDHEINHGQGERYKKLMIEEVIPAIKARMPRLPGHTIF-VQQDGPKPH 492
            +PLL+    + R+ F  +H+   G  +   D M+D V  DE WFYV K G  VY+       P E  P       +H     +  AVA P   +D   G+    + Y+    S     G ++++  + +  +        +++++ +VIPAIKA+ P+    T+  +QQD  +PH
Sbjct:   72 RPLLTASHRVARLKFAVNHVKLNGDGQYYFDPMFDVVHIDEKWFYVKKIGQRVYVLTGKDGTPLEEAPVQYVQSKRHIKKVMFLCAVARPRGDWDGKIGLWPVVETYITQRWSVNRPAGVEEIKPVSMNRTLA-------RRMLVTDVIPAIKAKWPQDQKATLIRIQQDNARPH 239          
BLAST of mRNA_D-mesarthrocarpus_Contig1063.3.1 vs. uniprot
Match: A0A6A4Z322_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z322_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.610e-6
Identity = 54/195 (27.69%), Postives = 80/195 (41.03%), Query Frame = 1
Query:    1 IKPLLSHEQNINRVDFVWSHMHRRGLSEVLVDDMYDWV--DETWFYVMKDGTGVYLPPKENKP*PLRAQNKH*SPSTYSLAVAWP---------YDLHWGVVQW*DRYLAYCESCAGEGGQQKLQEGNSDHEINHGQGERYKKLMIEEVIPAIKARMPRLPGHTIFVQQDGPKPHTGKG----VMEAIQDAWEMT 540
            +KP L+      RV +    +H    +E+   DMYD+V  DE WF   +  +  YL P E  P       +  +   +  AVA P         +D   G   + +   A   S     G  +L+  N    I       YKK++I+ VIPAIKA+ P     ++ +QQD  +PH        V     D W M+
Sbjct:  149 VKPKLTDVNKTARVKWAMDFVHP---TELRFHDMYDYVHVDEKWFNATRVKSRFYLLPGETPPHRTTQSKRFITKVMFLTAVARPRWDDAKSECWDGKIGTWHFTETVPAARSSRNRPAGTLELRPINVTRPI-------YKKMLIDNVIPAIKAKWPAESSRSVVIQQDNARPHVAPWDAAVVSACTSDGWSMS 333          
BLAST of mRNA_D-mesarthrocarpus_Contig1063.3.1 vs. uniprot
Match: A0A6A4Z6I9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z6I9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.280e-5
Identity = 57/176 (32.39%), Postives = 79/176 (44.89%), Query Frame = 1
Query:    1 IKPLLSHEQNINRVDFVWSHMHRRGLSEVLVDDMYDWV--DETWFYVMKDGTGVYLPPKENKP*PLRAQNKH*SPSTYSL-AVAWP---------YDLHWGVVQW*DRYLAYCESCAGEGGQQKLQEGNSDHEINHGQGERYKKLMIEEVIPAIKARMPRLPGHTIFVQQDGPKPH 492
            IKP L+    + RV+  W+    R  S     DM+D+V  DE WF+  K  + VYL P E  P     Q+KH       L AVA P         +D   G   +     A   S     G  +L+  +    I       YKK+++E VIPAIKA+ P+    +I +QQD  +PH
Sbjct:  132 IKPKLTDVNKVARVN--WAMKFVRPDSNFQFADMFDYVHVDEKWFHATKIKSRVYLLPGEVPP-HRSTQSKHFITKVMFLSAVARPRWDDAKSEWFDGKIGTWHFTQVVPAARSSRNRPAGTLELRPVSVTRPI-------YKKMLLENVIPAIKAKWPQDSTRSIVIQQDNARPH 297          
BLAST of mRNA_D-mesarthrocarpus_Contig1063.3.1 vs. uniprot
Match: A0A484NKB5_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484NKB5_9ASTE)

HSP 1 Score: 55.1 bits (131), Expect = 4.470e-5
Identity = 35/96 (36.46%), Postives = 48/96 (50.00%), Query Frame = 3
Query:  552 PDLNANDLGF--STPSWSDQWQGAGGGRHREIRRLSLVGTRTSLAEPFC--SLW--------KVMRCKGDNSYKIPHLGKEKLARAGNLPKTAQVD 803
            PDLN  DLGF  +  S  DQ           +  +  V    +   P C   +W        KVM  +G+N+YK+PH+GK++LAR GNLPK   +D
Sbjct:  207 PDLNVLDLGFFRAIQSLKDQCAPT-----TVVELIEAVEGAYNALSPECLNKVWLSYQQVMTKVMEHEGNNNYKLPHMGKDRLAREGNLPKCLNID 297          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1063.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
W2QAD0_PHYPN3.140e-1034.09Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
W4GWE0_9STRA5.410e-1029.10Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
W2NW41_PHYPR1.870e-933.52HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Ph... [more]
A0A448ZNT1_9STRA3.160e-728.07Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
W2QKX2_PHYPN8.750e-732.74HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Ph... [more]
A0A0W8C4B7_PHYNI1.780e-628.57Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A6A3XBC6_9STRA5.190e-627.43Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6A4Z322_9STRA5.610e-627.69Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4Z6I9_9STRA2.280e-532.39Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A484NKB5_9ASTE4.470e-536.46Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1063contigD-mesarthrocarpus_Contig1063:2226..3064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog157072.XP_008866696.1
Model size839
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.09e-05
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789198.6273515-UTR-D-mesarthrocarpus_Contig1063:2225..27641680789198.6273515-UTR-D-mesarthrocarpus_Contig1063:2225..2764Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1063 2226..2764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789198.6419618-CDS-D-mesarthrocarpus_Contig1063:2764..30641680789198.6419618-CDS-D-mesarthrocarpus_Contig1063:2764..3064Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1063 2765..3064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1063.3.1prot_D-mesarthrocarpus_Contig1063.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1063 2765..3064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1063.3.1

>prot_D-mesarthrocarpus_Contig1063.3.1 ID=prot_D-mesarthrocarpus_Contig1063.3.1|Name=mRNA_D-mesarthrocarpus_Contig1063.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=100bp
MHWKPDLNANDLGFSTPSWSDQWQGAGGGRHREIRRLSLVGTRTSLAEPF
CSLWKVMRCKGDNSYKIPHLGKEKLARAGNLPKTAQVDDGNYSARMAVLE
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mRNA from alignment at D-mesarthrocarpus_Contig1063:2226..3064+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1063.3.1 ID=mRNA_D-mesarthrocarpus_Contig1063.3.1|Name=mRNA_D-mesarthrocarpus_Contig1063.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=839bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1063:2226..3064+ (Discosporangium mesarthrocarpum MT17_79)
ATCAAGCCATTGCTCTCGCATGAGCAGAACATCAATAGGGTGGATTTTGT GTGGAGTCACATGCACAGGAGGGGGTTAAGTGAGGTGCTAGTGGATGACA TGTATGACTGGGTTGATGAGACGTGGTTTTATGTCATGAAGGACGGGACT GGGGTCTACCTACCCCCCAAAGAGAATAAACCCTAACCCTTGAGGGCGCA GAACAAACATTAATCGCCAAGTACATATTCCCTTGCTGTGGCATGGCCAT ACGATCTGCACTGGGGTGTGGTTCAATGGTAAGATCGGTATCTGGCCTAT TGTGAATCTTGTGCTGGCGAAGGGGGACAGCAAAAACTGCAAGAAGGTAA CTCCGATCATGAAATCAACCATGGTCAAGGGGAGAGGTACAAGAAGCTCA TGATCGAGGAGGTCATCCCTGCAATCAAGGCGAGAATGCCCAGACTGCCA GGTCACACGATATTTGTGCAGCAGGATGGTCCAAAGCCGCACACAGGAAA GGGGGTCATGGAGGCAATCCAGGATGCGTGGGAGATGACATGCACTGGAA ACCTGACCTCAATGCCAATGATCTTGGCTTTTCCACTCCATCCTGGAGTG ACCAATGGCAAGGAGCTGGTGGAGGCCGCCATAGAGAAATTAGACGTCTA TCCCTGGTAGGCACAAGAACGAGTCTGGCAGAGCCTTTTTGCAGTCTATG GAAAGTCATGAGGTGCAAAGGTGACAATAGCTACAAAATACCTCACTTGG GAAAGGAGAAGCTTGCTAGGGCAGGCAATCTTCCCAAGACTGCACAGGTG GATGACGGAAATTACAGCGCCAGGATGGCCGTTTTGGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1063:2226..3064+

>mRNA_D-mesarthrocarpus_Contig1063.3.1 ID=mRNA_D-mesarthrocarpus_Contig1063.3.1|Name=mRNA_D-mesarthrocarpus_Contig1063.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=300bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1063:2226..3064+ (Discosporangium mesarthrocarpum MT17_79)
ATGCACTGGAAACCTGACCTCAATGCCAATGATCTTGGCTTTTCCACTCC
ATCCTGGAGTGACCAATGGCAAGGAGCTGGTGGAGGCCGCCATAGAGAAA
TTAGACGTCTATCCCTGGTAGGCACAAGAACGAGTCTGGCAGAGCCTTTT
TGCAGTCTATGGAAAGTCATGAGGTGCAAAGGTGACAATAGCTACAAAAT
ACCTCACTTGGGAAAGGAGAAGCTTGCTAGGGCAGGCAATCTTCCCAAGA
CTGCACAGGTGGATGACGGAAATTACAGCGCCAGGATGGCCGTTTTGGAG
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