mRNA_D-mesarthrocarpus_Contig10628.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10628.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10628.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10628.2.1 vs. uniprot
Match: A0A6H5KGP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP7_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.640e-13
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 YLARPLHLSHSECHVAPLVPFPVEVPKNCPYFPYKEAHIPLIT 129
            YLARPL L  S C ++PLV FPV+VPKNCPYFPY EA+IPLIT
Sbjct:  143 YLARPLPLERSGCVLSPLVAFPVDVPKNCPYFPYGEAYIPLIT 185
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10628.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGP7_9PHAE3.640e-1374.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10628contigD-mesarthrocarpus_Contig10628:3769..3897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008880410.1
PFAMsRrnaAD
Model size129
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00614
KEGG koko:K00542
KEGG ReactionR01883
KEGG Pathwayko00260,ko00330,ko01100,map00260,map00330,map01100
KEGG ModuleM00047
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.64e-06
EggNOG OGsKOG1709@1|root,KOG1709@2759|Eukaryota
EC2.1.1.2
Descriptionprotein-arginine N5-methyltransferase activity
Cds size129
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789198.27264-CDS-D-mesarthrocarpus_Contig10628:3768..38971680789198.27264-CDS-D-mesarthrocarpus_Contig10628:3768..3897Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10628 3769..3897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10628.2.1prot_D-mesarthrocarpus_Contig10628.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10628 3769..3897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10628.2.1

>prot_D-mesarthrocarpus_Contig10628.2.1 ID=prot_D-mesarthrocarpus_Contig10628.2.1|Name=mRNA_D-mesarthrocarpus_Contig10628.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=43bp
YLARPLHLSHSECHVAPLVPFPVEVPKNCPYFPYKEAHIPLIT
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mRNA from alignment at D-mesarthrocarpus_Contig10628:3769..3897-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10628.2.1 ID=mRNA_D-mesarthrocarpus_Contig10628.2.1|Name=mRNA_D-mesarthrocarpus_Contig10628.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=129bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10628:3769..3897- (Discosporangium mesarthrocarpum MT17_79)
TACCTGGCGCGACCCCTCCATCTGTCCCATTCAGAGTGTCACGTTGCCCC
CCTGGTGCCCTTCCCCGTTGAGGTCCCAAAAAACTGCCCCTATTTTCCGT
ACAAGGAAGCCCACATACCCCTGATCACT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10628:3769..3897-

>mRNA_D-mesarthrocarpus_Contig10628.2.1 ID=mRNA_D-mesarthrocarpus_Contig10628.2.1|Name=mRNA_D-mesarthrocarpus_Contig10628.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=129bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10628:3769..3897- (Discosporangium mesarthrocarpum MT17_79)
TACCTGGCGCGACCCCTCCATCTGTCCCATTCAGAGTGTCACGTTGCCCC
CCTGGTGCCCTTCCCCGTTGAGGTCCCAAAAAACTGCCCCTATTTTCCGT
ACAAGGAAGCCCACATACCCCTGATCACT
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