mRNA_D-mesarthrocarpus_Contig10624.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10624.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig10624.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10624.4.1 vs. uniprot
Match: A0A349E9I8_9GAMM (Acyl-CoA thioesterase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A349E9I8_9GAMM)

HSP 1 Score: 155 bits (392), Expect = 2.380e-46
Identity = 71/115 (61.74%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 CYVVWCEACAWEHSRALGLTVADYQRLDRGVAIQRAEYNYTQPSLVGDQLVIGTWLTGCDNRLRLERRFQIRRQDNGKTVLRGHWLLIGINMTSGKPARFPPEFIASYGAAVSRP 345
            CYVVWCE CAW HS++LGLTVADYQRLDRGVAI++A Y Y  P+   + L IGTW+T CD +LR+ERRFQ+     GKTVLRGHW +I + ++SGK  R P EFI +YG AV  P
Sbjct:   35 CYVVWCEQCAWSHSQSLGLTVADYQRLDRGVAIRKASYEYCLPTFENEALRIGTWITACDRKLRMERRFQMINFATGKTVLRGHWQVICVTLSSGKATRLPSEFIEAYGNAVIAP 149          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.4.1 vs. uniprot
Match: A0A2E8F7K4_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8F7K4_9GAMM)

HSP 1 Score: 152 bits (383), Expect = 4.340e-45
Identity = 66/112 (58.93%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    1 CYVVWCEACAWEHSRALGLTVADYQRLDRGVAIQRAEYNYTQPSLVGDQLVIGTWLTGCDNRLRLERRFQIRRQDNGKTVLRGHWLLIGINMTSGKPARFPPEFIASYGAAV 336
            CYVVWCE CAW+HS  LGL +ADYQRLDRGVAI + +Y+Y  PS   ++L++GTWLT CD +LRLER FQ   ++ G TV+RG W LI + +++GKP+RFP EF+ SY  AV
Sbjct:   30 CYVVWCEQCAWKHSELLGLNIADYQRLDRGVAINKXDYDYFLPSFNREELIVGTWLTACDEKLRLERSFQTINRETGATVMRGSWQLICVTLSTGKPSRFPQEFLDSYATAV 141          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.4.1 vs. uniprot
Match: A0A2E9ZI44_9GAMM (Acyl-CoA thioesterase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E9ZI44_9GAMM)

HSP 1 Score: 151 bits (382), Expect = 6.550e-45
Identity = 69/112 (61.61%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 CYVVWCEACAWEHSRALGLTVADYQRLDRGVAIQRAEYNYTQPSLVGDQLVIGTWLTGCDNRLRLERRFQIRRQDNGKTVLRGHWLLIGINMTSGKPARFPPEFIASYGAAV 336
            CYVVWCEACAW+HS  LGL++ DYQ L+RGVAI +A Y Y  PS  G++L+ GTWLT CDN+LRLERRFQ+     G TVLRG W LI + ++SGK +RFP +FI  YG AV
Sbjct:   30 CYVVWCEACAWKHSEELGLSLNDYQILNRGVAIHKARYEYFLPSFEGERLIAGTWLTACDNKLRLERRFQVLNPRTGNTVLRGQWQLICVTLSSGKASRFPDKFIDIYGGAV 141          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.4.1 vs. uniprot
Match: A0A2A5AGW9_9GAMM (Thioesterase n=1 Tax=SAR86 cluster bacterium TaxID=2030880 RepID=A0A2A5AGW9_9GAMM)

HSP 1 Score: 151 bits (381), Expect = 9.010e-45
Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 CYVVWCEACAWEHSRALGLTVADYQRLDRGVAIQRAEYNYTQPSLVGDQLVIGTWLTGCDNRLRLERRFQIRRQDNGKTVLRGHWLLIGINMTSGKPARFPPEFIASYGAAV 336
            CYV+WCE CAW HS  LGL+V DYQRLDRGVAI +A+Y Y  PS   ++L++GTWL  CD +LRLER+FQ+   D  +TVLRGHW LI +++ SGK AR P EFI  YG+AV
Sbjct:   31 CYVIWCEQCAWSHSETLGLSVKDYQRLDRGVAIHKAQYEYFLPSFKDEKLMVGTWLIACDQKLRLERKFQMINLDTQETVLRGHWQLICVSLKSGKAARLPKEFIDIYGSAV 142          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.4.1 vs. uniprot
Match: A0A2A4WSR2_9GAMM (Thioesterase n=1 Tax=SAR86 cluster bacterium TaxID=2030880 RepID=A0A2A4WSR2_9GAMM)

HSP 1 Score: 145 bits (366), Expect = 1.830e-42
Identity = 67/112 (59.82%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 CYVVWCEACAWEHSRALGLTVADYQRLDRGVAIQRAEYNYTQPSLVGDQLVIGTWLTGCDNRLRLERRFQIRRQDNGKTVLRGHWLLIGINMTSGKPARFPPEFIASYGAAV 336
            CYVVWCE CAW HS  LGL++ DYQRLDRGVAI++A Y Y  P+   + L+I TWLT CD + RLERRFQ+     G+TV RGHW LI I ++SGK  +FP EFI  YG+AV
Sbjct:   30 CYVVWCEQCAWNHSEFLGLSLKDYQRLDRGVAIRKASYEYFLPAFENEDLLIATWLTACDGKFRLERRFQMINLATGQTVQRGHWELICITLSSGKVMKFPNEFIERYGSAV 141          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.4.1 vs. uniprot
Match: A0A359GTE8_9GAMM (Acyl-CoA thioesterase n=4 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A359GTE8_9GAMM)

HSP 1 Score: 145 bits (366), Expect = 2.410e-42
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    1 CYVVWCEACAWEHSRALGLTVADYQRLDRGVAIQRAEYNYTQPSLVGDQLVIGTWLTGCDNRLRLERRFQIRRQDNGKTVLRGHWLLIGINMTSGKPARFPPEFIASYGAAV 336
            CY +WCE CAW+HS  LGLT+ DYQRLDRGV + +A YNY  P+   +QL+I TWLT CD +LRLERRFQ+      +T+++ HWL+I   +++GKPARFP +FI  YG+A+
Sbjct:   39 CYAIWCENCAWKHSEDLGLTLQDYQRLDRGVVVHKASYNYLLPAFENNQLMIATWLTNCDYKLRLERRFQVINLQTKQTLMKAHWLMICTVLSTGKPARFPSKFIEVYGSAI 150          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.4.1 vs. uniprot
Match: A0A3C0P6V9_9GAMM (Acyl-CoA thioesterase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3C0P6V9_9GAMM)

HSP 1 Score: 143 bits (361), Expect = 1.120e-41
Identity = 69/112 (61.61%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 CYVVWCEACAWEHSRALGLTVADYQRLDRGVAIQRAEYNYTQPSLVGDQLVIGTWLTGCDNRLRLERRFQIRRQDNGKTVLRGHWLLIGINMTSGKPARFPPEFIASYGAAV 336
            CYVVWCE CAW+HS ALGL+V DYQRLDRGV+I RA Y Y  PS   D L I TWLT CD +LRLER FQI      +TVLRG W LI   +++GK  R P EF+ +YGAAV
Sbjct:   30 CYVVWCEDCAWKHSEALGLSVEDYQRLDRGVSIHRANYEYLLPSFENDSLTIATWLTDCDCKLRLERSFQIINTATEQTVLRGSWQLICTALSTGKAVRLPQEFLNTYGAAV 141          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.4.1 vs. uniprot
Match: A0A6I3SVQ8_9BURK (Acyl-CoA thioesterase n=1 Tax=Massilia buxea TaxID=1949069 RepID=A0A6I3SVQ8_9BURK)

HSP 1 Score: 141 bits (356), Expect = 6.630e-41
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    4 YVVWCEACAWEHSRALGLTVADYQRLDRGVAIQRAEYNYTQPSLVGDQLVIGTWLTGCDNRLRLERRFQIRRQDNGKTVLRGHWLLIGINMTSGKPARFPPEFIASYGAAV 336
            YV WCE   W HS ALGL +ADYQRLDR +AIQRAEY+Y  P+  GD+L++GTWL   D RL +ERRFQ+ R  +G TV+RG W L+ I++ SGKP R PPEF A+Y  AV
Sbjct:   31 YVRWCELAGWSHSEALGLDLADYQRLDRAMAIQRAEYDYLLPTGAGDELLLGTWLCATDGRLAMERRFQLLRAADGATVMRGRWQLVCIDIASGKPRRMPPEFCAAYLPAV 141          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.4.1 vs. uniprot
Match: A0A519IEK8_9BURK (Acyl-CoA thioesterase n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519IEK8_9BURK)

HSP 1 Score: 139 bits (349), Expect = 6.800e-40
Identity = 61/113 (53.98%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    4 YVVWCEACAWEHSRALGLTVADYQRLDRGVAIQRAEYNYTQPSLVGDQLVIGTWLTGCDNRLRLERRFQIRRQDNGKTVLRGHWLLIGINMTSGKPARFPPEFIASYGAAVSR 342
            YV WCE   W HS ALGL++ DY+RLDR +AI+   Y+Y  PS  G+ LV+ TWLTG D +L +ERRFQ+RR  +G T++RG W+L+ I++++GKP R PPEF+A+Y  AV R
Sbjct:   32 YVQWCEQAGWAHSEALGLSLDDYRRLDRAMAIREGHYDYLLPSFEGEALVLATWLTGSDGKLTMERRFQLRRASDGATLVRGRWVLVCIDISTGKPRRMPPEFLATYEGAVVR 144          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.4.1 vs. uniprot
Match: A0A520BQR7_9BURK (Acyl-CoA thioesterase n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A520BQR7_9BURK)

HSP 1 Score: 138 bits (347), Expect = 1.590e-39
Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    4 YVVWCEACAWEHSRALGLTVADYQRLDRGVAIQRAEYNYTQPSLVGDQLVIGTWLTGCDNRLRLERRFQIRRQDNGKTVLRGHWLLIGINMTSGKPARFPPEFIASYGAAV 336
            YV WCE   W HS ALGL++ADY+RLDR +AI+   Y+Y  PS  G+ L++GTWLT  D RL +ERRFQ+RR  +G T++RG WLL+ I + SG+P R PPEF+++Y +A+
Sbjct:   34 YVQWCEQAGWAHSEALGLSLADYRRLDRAMAIREGHYDYLLPSFEGEALLLGTWLTASDGRLTMERRFQLRRVSDGATLVRGRWLLVCIEIASGRPKRMPPEFLSAYESAL 144          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10624.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A349E9I8_9GAMM2.380e-4661.74Acyl-CoA thioesterase n=1 Tax=Gammaproteobacteria ... [more]
A0A2E8F7K4_9GAMM4.340e-4558.93Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2E9ZI44_9GAMM6.550e-4561.61Acyl-CoA thioesterase n=1 Tax=Gammaproteobacteria ... [more]
A0A2A5AGW9_9GAMM9.010e-4560.71Thioesterase n=1 Tax=SAR86 cluster bacterium TaxID... [more]
A0A2A4WSR2_9GAMM1.830e-4259.82Thioesterase n=1 Tax=SAR86 cluster bacterium TaxID... [more]
A0A359GTE8_9GAMM2.410e-4255.36Acyl-CoA thioesterase n=4 Tax=Gammaproteobacteria ... [more]
A0A3C0P6V9_9GAMM1.120e-4161.61Acyl-CoA thioesterase n=1 Tax=Gammaproteobacteria ... [more]
A0A6I3SVQ8_9BURK6.630e-4159.46Acyl-CoA thioesterase n=1 Tax=Massilia buxea TaxID... [more]
A0A519IEK8_9BURK6.800e-4053.98Acyl-CoA thioesterase n=1 Tax=Rubrivivax sp. TaxID... [more]
A0A520BQR7_9BURK1.590e-3954.05Acyl-CoA thioesterase n=1 Tax=Rubrivivax sp. TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10624contigD-mesarthrocarpus_Contig10624:3850..4206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog316057.RPD_2836
PFAMs4HBT,4HBT_2,Acyl-ACP_TE
Model size357
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07107
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.34e-38
EggNOG OGsCOG0824@1|root,COG0824@2|Bacteria,1RI3X@1224|Proteobacteria,2UC1Z@28211|Alphaproteobacteria
DescriptionThioesterase superfamily
Cds size357
COG categoryS
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789198.1819484-CDS-D-mesarthrocarpus_Contig10624:3849..42061680789198.1819484-CDS-D-mesarthrocarpus_Contig10624:3849..4206Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10624 3850..4206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10624.4.1prot_D-mesarthrocarpus_Contig10624.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10624 3850..4206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10624.4.1

>prot_D-mesarthrocarpus_Contig10624.4.1 ID=prot_D-mesarthrocarpus_Contig10624.4.1|Name=mRNA_D-mesarthrocarpus_Contig10624.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=119bp
CYVVWCEACAWEHSRALGLTVADYQRLDRGVAIQRAEYNYTQPSLVGDQL
VIGTWLTGCDNRLRLERRFQIRRQDNGKTVLRGHWLLIGINMTSGKPARF
PPEFIASYGAAVSRPEKA*
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mRNA from alignment at D-mesarthrocarpus_Contig10624:3850..4206-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10624.4.1 ID=mRNA_D-mesarthrocarpus_Contig10624.4.1|Name=mRNA_D-mesarthrocarpus_Contig10624.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=357bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10624:3850..4206- (Discosporangium mesarthrocarpum MT17_79)
TGTTACGTGGTTTGGTGTGAAGCCTGTGCCTGGGAACATTCCCGGGCCCT GGGCCTGACCGTAGCCGACTACCAGCGCCTGGATCGTGGCGTAGCGATCC AGCGCGCCGAGTATAATTATACCCAGCCCAGTCTGGTCGGCGATCAATTG GTGATCGGCACCTGGCTTACCGGTTGCGACAATCGGCTGCGCCTCGAACG TCGCTTTCAGATTCGCCGTCAGGATAATGGCAAAACCGTGCTGCGCGGTC ACTGGCTGCTGATTGGCATCAACATGACCAGTGGCAAGCCGGCGCGCTTC CCGCCGGAATTTATCGCCAGCTACGGTGCGGCGGTAAGCCGGCCGGAAAA AGCGTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10624:3850..4206-

>mRNA_D-mesarthrocarpus_Contig10624.4.1 ID=mRNA_D-mesarthrocarpus_Contig10624.4.1|Name=mRNA_D-mesarthrocarpus_Contig10624.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=357bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10624:3850..4206- (Discosporangium mesarthrocarpum MT17_79)
TGTTACGTGGTTTGGTGTGAAGCCTGTGCCTGGGAACATTCCCGGGCCCT
GGGCCTGACCGTAGCCGACTACCAGCGCCTGGATCGTGGCGTAGCGATCC
AGCGCGCCGAGTATAATTATACCCAGCCCAGTCTGGTCGGCGATCAATTG
GTGATCGGCACCTGGCTTACCGGTTGCGACAATCGGCTGCGCCTCGAACG
TCGCTTTCAGATTCGCCGTCAGGATAATGGCAAAACCGTGCTGCGCGGTC
ACTGGCTGCTGATTGGCATCAACATGACCAGTGGCAAGCCGGCGCGCTTC
CCGCCGGAATTTATCGCCAGCTACGGTGCGGCGGTAAGCCGGCCGGAAAA
AGCGTAG
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