mRNA_D-mesarthrocarpus_Contig10624.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10624.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10624.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10624.2.1 vs. uniprot
Match: A0A2E9JG65_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E9JG65_9GAMM)

HSP 1 Score: 139 bits (349), Expect = 1.930e-41
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 1
Query:   19 VNAKNFYIIATAPNEPSLQVKISGPYLTRQAAQADLAAAIDEAMGIDPSAKDYQYSISHVESRKPGVIQHMAAHA 243
            +N KNFYI+A APNEPSLQVKISGPYLT QAAQADLAAAIDEAMGIDPSAK+YQYSISHVESRKPGVIQHMAAHA
Sbjct:    1 MNEKNFYIVAMAPNEPSLQVKISGPYLTEQAAQADLAAAIDEAMGIDPSAKNYQYSISHVESRKPGVIQHMAAHA 75          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.2.1 vs. uniprot
Match: A0A2E8XG42_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8XG42_9GAMM)

HSP 1 Score: 137 bits (345), Expect = 9.630e-41
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 1
Query:   19 VNAKNFYIIATAPNEPSLQVKISGPYLTRQAAQADLAAAIDEAMGIDPSAKDYQYSISHVESRKPGVIQHMAAHA 243
            VN KNFYI+ATAPNEP+LQVKISGPYLT QAAQADLAAAIDEAM IDPSAK+Y+YSISHVESRKPGVIQHMAAHA
Sbjct:    8 VNVKNFYIVATAPNEPTLQVKISGPYLTEQAAQADLAAAIDEAMDIDPSAKNYKYSISHVESRKPGVIQHMAAHA 82          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.2.1 vs. uniprot
Match: A0A2E1ZL58_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E1ZL58_9GAMM)

HSP 1 Score: 135 bits (340), Expect = 4.830e-40
Identity = 66/75 (88.00%), Postives = 74/75 (98.67%), Query Frame = 1
Query:   19 VNAKNFYIIATAPNEPSLQVKISGPYLTRQAAQADLAAAIDEAMGIDPSAKDYQYSISHVESRKPGVIQHMAAHA 243
            +NAKNFYI+ATAPNEPSLQVKISGPYLT++AAQADL+AAIDEAM IDPSAKDY+Y+ISHVESR+PGVIQHMAAHA
Sbjct:    1 MNAKNFYIVATAPNEPSLQVKISGPYLTQKAAQADLSAAIDEAMEIDPSAKDYKYTISHVESRQPGVIQHMAAHA 75          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.2.1 vs. uniprot
Match: A0A2E7DPB7_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7DPB7_9GAMM)

HSP 1 Score: 127 bits (320), Expect = 5.130e-37
Identity = 62/73 (84.93%), Postives = 71/73 (97.26%), Query Frame = 1
Query:   19 VNAKNFYIIATAPNEPSLQVKISGPYLTRQAAQADLAAAIDEAMGIDPSAKDYQYSISHVESRKPGVIQHMAA 237
            +N+KNFYIIATAPNEP+LQV+ISGPYLT +AAQADL+AAIDEA+ IDPSAK+Y+YSISHVESRKPGVIQHMAA
Sbjct:    1 MNSKNFYIIATAPNEPALQVRISGPYLTEEAAQADLSAAIDEAIEIDPSAKNYEYSISHVESRKPGVIQHMAA 73          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.2.1 vs. uniprot
Match: A0A2D5IBM7_9GAMM (Uncharacterized protein n=6 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A2D5IBM7_9GAMM)

HSP 1 Score: 126 bits (316), Expect = 2.560e-36
Identity = 63/76 (82.89%), Postives = 70/76 (92.11%), Query Frame = 1
Query:   16 SVNAKNFYIIATAPNEPSLQVKISGPYLTRQAAQADLAAAIDEAMGIDPSAKDYQYSISHVESRKPGVIQHMAAHA 243
            +VNAKNFYI+ATAPNEPSL+VKISGPYLT QAA+ADL AAI EA  IDPSA+DY+Y+IS VESRKPGVIQHMAAHA
Sbjct:    7 AVNAKNFYIVATAPNEPSLRVKISGPYLTEQAARADLDAAIKEAADIDPSAEDYEYTISKVESRKPGVIQHMAAHA 82          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.2.1 vs. uniprot
Match: A0A2A5AGA0_9GAMM (Uncharacterized protein n=1 Tax=SAR86 cluster bacterium TaxID=2030880 RepID=A0A2A5AGA0_9GAMM)

HSP 1 Score: 127 bits (318), Expect = 3.270e-36
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    1 LVVTTSVNAKNFYIIATAPNEPSLQVKISGPYLTRQAAQADLAAAIDEAMGIDPSAKDYQYSISHVESRKPGVIQHMAAHA 243
            LV    V+ KNFYIIATAPNEPSLQVKISGPYLT+QAAQADL+AAIDEA+ IDPSA +Y YS+S VESRKPGVIQHMA+HA
Sbjct:   34 LVELYQVDRKNFYIIATAPNEPSLQVKISGPYLTQQAAQADLSAAIDEAVDIDPSATNYNYSVSKVESRKPGVIQHMASHA 114          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.2.1 vs. uniprot
Match: A0A2E8F7J1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8F7J1_9GAMM)

HSP 1 Score: 125 bits (314), Expect = 5.010e-36
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 1
Query:    1 LVVTTSVNAKNFYIIATAPNEPSLQVKISGPYLTRQAAQADLAAAIDEAMGIDPSAKDYQYSISHVESRKPGVIQHMAAHA 243
            +V+   VN  NFYIIATAP +PSLQ+ ISGPYLTRQAAQADLAAAIDEA+GIDPSAKDY Y+IS V S KPGVIQHMA+HA
Sbjct:    1 MVLIIKVNENNFYIIATAPKQPSLQLNISGPYLTRQAAQADLAAAIDEALGIDPSAKDYDYTISKVHSCKPGVIQHMASHA 81          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.2.1 vs. uniprot
Match: A0A2E0ZW54_9GAMM (Uncharacterized protein n=4 Tax=root TaxID=1 RepID=A0A2E0ZW54_9GAMM)

HSP 1 Score: 124 bits (312), Expect = 8.530e-36
Identity = 61/72 (84.72%), Postives = 65/72 (90.28%), Query Frame = 1
Query:   19 VNAKNFYIIATAPNEPSLQVKISGPYLTRQAAQADLAAAIDEAMGIDPSAKDYQYSISHVESRKPGVIQHMA 234
            +NAKNFYI+AT PNEPSLQVK+SGPYLT QAAQADL AAIDE M IDPSAK+YQYSIS VES KPGVIQHMA
Sbjct:    1 MNAKNFYIVATVPNEPSLQVKVSGPYLTEQAAQADLVAAIDEVMDIDPSAKNYQYSISRVESHKPGVIQHMA 72          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.2.1 vs. uniprot
Match: A0A349E6B7_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A349E6B7_9GAMM)

HSP 1 Score: 124 bits (311), Expect = 1.210e-35
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 1
Query:   19 VNAKNFYIIATAPNEPSLQVKISGPYLTRQAAQADLAAAIDEAMGIDPSAKDYQYSISHVESRKPGVIQHMAAHA 243
            +++KNFYI+ATAPNEPSLQVKISGPYLT+QAAQADL+AAIDEA  IDPSA +Y YSI  VESRKPGVIQHMA+HA
Sbjct:    1 MDSKNFYIVATAPNEPSLQVKISGPYLTKQAAQADLSAAIDEAKDIDPSAANYDYSIDKVESRKPGVIQHMASHA 75          
BLAST of mRNA_D-mesarthrocarpus_Contig10624.2.1 vs. uniprot
Match: A0A424MW40_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TMED163 TaxID=1986739 RepID=A0A424MW40_9GAMM)

HSP 1 Score: 122 bits (307), Expect = 4.940e-35
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 1
Query:   19 VNAKNFYIIATAPNEPSLQVKISGPYLTRQAAQADLAAAIDEAMGIDPSAKDYQYSISHVESRKPGVIQHMAAHA 243
            +NA+NFYI+ATAPNEPSLQVKISGPYLT QAA+ADL AAI EA  IDPSA++Y+Y+IS VESRKPGVIQHMAAHA
Sbjct:    1 MNAQNFYIVATAPNEPSLQVKISGPYLTEQAARADLDAAIKEAADIDPSAENYEYTISKVESRKPGVIQHMAAHA 75          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10624.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E9JG65_9GAMM1.930e-4192.00Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A2E8XG42_9GAMM9.630e-4190.67Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A2E1ZL58_9GAMM4.830e-4088.00Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A2E7DPB7_9GAMM5.130e-3784.93Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2D5IBM7_9GAMM2.560e-3682.89Uncharacterized protein n=6 Tax=unclassified Gamma... [more]
A0A2A5AGA0_9GAMM3.270e-3680.25Uncharacterized protein n=1 Tax=SAR86 cluster bact... [more]
A0A2E8F7J1_9GAMM5.010e-3677.78Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2E0ZW54_9GAMM8.530e-3684.72Uncharacterized protein n=4 Tax=root TaxID=1 RepID... [more]
A0A349E6B7_9GAMM1.210e-3581.33Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A424MW40_9GAMM4.940e-3581.33Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10624contigD-mesarthrocarpus_Contig10624:1032..1277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size246
Hectar predicted targeting categoryother localisation
Exons1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789198.0979004-CDS-D-mesarthrocarpus_Contig10624:1031..12771680789198.0979004-CDS-D-mesarthrocarpus_Contig10624:1031..1277Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10624 1032..1277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10624.2.1prot_D-mesarthrocarpus_Contig10624.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10624 1032..1277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10624.2.1

>prot_D-mesarthrocarpus_Contig10624.2.1 ID=prot_D-mesarthrocarpus_Contig10624.2.1|Name=mRNA_D-mesarthrocarpus_Contig10624.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=82bp
LVVTTSVNAKNFYIIATAPNEPSLQVKISGPYLTRQAAQADLAAAIDEAM
GIDPSAKDYQYSISHVESRKPGVIQHMAAHA*
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mRNA from alignment at D-mesarthrocarpus_Contig10624:1032..1277-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10624.2.1 ID=mRNA_D-mesarthrocarpus_Contig10624.2.1|Name=mRNA_D-mesarthrocarpus_Contig10624.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=246bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10624:1032..1277- (Discosporangium mesarthrocarpum MT17_79)
CTGGTGGTAACCACGTCAGTGAACGCAAAGAACTTCTACATTATTGCCAC GGCTCCCAACGAGCCGAGTCTGCAAGTTAAAATCTCTGGTCCCTACCTCA CCCGTCAGGCTGCCCAGGCAGATCTGGCCGCCGCCATTGACGAGGCCATG GGTATTGATCCCAGCGCCAAGGACTACCAGTACAGCATCTCCCACGTGGA AAGTCGCAAGCCAGGTGTGATTCAGCACATGGCCGCCCACGCCTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10624:1032..1277-

>mRNA_D-mesarthrocarpus_Contig10624.2.1 ID=mRNA_D-mesarthrocarpus_Contig10624.2.1|Name=mRNA_D-mesarthrocarpus_Contig10624.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=246bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10624:1032..1277- (Discosporangium mesarthrocarpum MT17_79)
CTGGTGGTAACCACGTCAGTGAACGCAAAGAACTTCTACATTATTGCCAC
GGCTCCCAACGAGCCGAGTCTGCAAGTTAAAATCTCTGGTCCCTACCTCA
CCCGTCAGGCTGCCCAGGCAGATCTGGCCGCCGCCATTGACGAGGCCATG
GGTATTGATCCCAGCGCCAAGGACTACCAGTACAGCATCTCCCACGTGGA
AAGTCGCAAGCCAGGTGTGATTCAGCACATGGCCGCCCACGCCTAG
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