mRNA_D-mesarthrocarpus_Contig10621.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10621.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10621.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10621.2.1 vs. uniprot
Match: A0A835ZFA2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.050e-14
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:  292 TQRWFRCLEANYLRSKCFFLEKFLAQLLFEVPTPSLLLTFVQVP 423
            TQRWFRCLEANYLR+KC++LEKF+  LLFE+P+PSLLLTFVQ P
Sbjct:  188 TQRWFRCLEANYLRTKCYYLEKFIGCLLFELPSPSLLLTFVQAP 231
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BLAST of mRNA_D-mesarthrocarpus_Contig10621.2.1 vs. uniprot
Match: D7FHG1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG1_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.310e-12
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:  289 QTQRWFRCLEANYLRSKCFFLEKFLAQLLFEVPTPSLLLTFV 414
            QTQRWFRCLEANYL++KC  LE+FLAQ LFEVPTPSLL+ FV
Sbjct:  262 QTQRWFRCLEANYLKTKCSLLERFLAQFLFEVPTPSLLMNFV 303
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10621.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZFA2_9STRA3.050e-1479.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FHG1_ECTSI1.310e-1280.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10621contigD-mesarthrocarpus_Contig10621:1133..1558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHG1
PFAMszf-RING_2
Model size428
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue2.15e-13
EggNOG OGs2C38U@1|root,2RHZN@2759|Eukaryota
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-25_002530.1
Cds size426
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789198.0229924-CDS-D-mesarthrocarpus_Contig10621:1132..15581680789198.0229924-CDS-D-mesarthrocarpus_Contig10621:1132..1558Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10621 1133..1558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10621.2.1prot_D-mesarthrocarpus_Contig10621.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10621 1133..1558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10621.2.1

>prot_D-mesarthrocarpus_Contig10621.2.1 ID=prot_D-mesarthrocarpus_Contig10621.2.1|Name=mRNA_D-mesarthrocarpus_Contig10621.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=142bp
YFRVRVRAVRVRAECLVHLVRTIVQQRLDISAKGLVGLLDIGLHVSCTNC
AEESVSHSCSKRASNEVLGSTSTTATRKALSPCPLLSLRPSLSPFLQTQR
WFRCLEANYLRSKCFFLEKFLAQLLFEVPTPSLLLTFVQVPP
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mRNA from alignment at D-mesarthrocarpus_Contig10621:1133..1558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10621.2.1 ID=mRNA_D-mesarthrocarpus_Contig10621.2.1|Name=mRNA_D-mesarthrocarpus_Contig10621.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=426bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10621:1133..1558+ (Discosporangium mesarthrocarpum MT17_79)
TATTTTAGGGTTAGGGTTAGGGCAGTAAGGGTTAGGGCAGAGTGCCTCGT
GCATTTGGTGAGGACAATAGTGCAGCAGCGCCTTGATATCAGCGCAAAGG
GCCTTGTTGGTTTGCTCGATATTGGCCTCCATGTCTCGTGTACAAACTGT
GCGGAGGAGAGTGTTTCCCATTCCTGCTCAAAGAGGGCTTCTAACGAGGT
ATTGGGTAGTACTAGTACTACCGCCACGAGAAAAGCACTCTCTCCCTGCC
CCCTTCTGTCCCTCCGTCCCTCCCTCTCCCCCTTTCTCCAGACCCAGCGG
TGGTTCCGGTGCCTGGAGGCGAACTACCTGAGGTCGAAATGCTTTTTCCT
GGAGAAATTTCTGGCCCAGCTCCTCTTCGAGGTCCCCACCCCCTCCCTTC
TCCTCACCTTTGTGCAGGTCCCGCCA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10621:1133..1558+

>mRNA_D-mesarthrocarpus_Contig10621.2.1 ID=mRNA_D-mesarthrocarpus_Contig10621.2.1|Name=mRNA_D-mesarthrocarpus_Contig10621.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=426bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10621:1133..1558+ (Discosporangium mesarthrocarpum MT17_79)
TATTTTAGGGTTAGGGTTAGGGCAGTAAGGGTTAGGGCAGAGTGCCTCGT
GCATTTGGTGAGGACAATAGTGCAGCAGCGCCTTGATATCAGCGCAAAGG
GCCTTGTTGGTTTGCTCGATATTGGCCTCCATGTCTCGTGTACAAACTGT
GCGGAGGAGAGTGTTTCCCATTCCTGCTCAAAGAGGGCTTCTAACGAGGT
ATTGGGTAGTACTAGTACTACCGCCACGAGAAAAGCACTCTCTCCCTGCC
CCCTTCTGTCCCTCCGTCCCTCCCTCTCCCCCTTTCTCCAGACCCAGCGG
TGGTTCCGGTGCCTGGAGGCGAACTACCTGAGGTCGAAATGCTTTTTCCT
GGAGAAATTTCTGGCCCAGCTCCTCTTCGAGGTCCCCACCCCCTCCCTTC
TCCTCACCTTTGTGCAGGTCCCGCCA
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