mRNA_D-mesarthrocarpus_Contig10620.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10620.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10620.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10620.1.1 vs. uniprot
Match: D7G1V9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V9_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 3.860e-47
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = 1
Query:    1 MGEEVPDWTMMWGAKVKMPIDMKDDMLRDSINTCRDVLDKCSDFEAEGLAAAESIKKHFDEKWNSNWHVIIGRNFGSFVTHETT 252
            MGE VPDW  MWGAKVKMP DM+DDMLRD+I TCRD LD C+DFEAEGLAAAE IKKHFD +W+ +WHVIIGRNFGSFVTHETT
Sbjct:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETT 84          
BLAST of mRNA_D-mesarthrocarpus_Contig10620.1.1 vs. uniprot
Match: A0A836CJA1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA1_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.140e-39
Identity = 57/77 (74.03%), Postives = 70/77 (90.91%), Query Frame = 1
Query:   19 DWTMMWGAKVKMPIDMKDDMLRDSINTCRDVLDKCSDFEAEGLAAAESIKKHFDEKWNSNWHVIIGRNFGSFVTHET 249
            DW MMWGAKVK+P+DM DD+L+D+I+T R+VLDKC DFEAEGLA+AE IK+H DE+W+ +WHV+IGRNFGSFVTHET
Sbjct:    7 DWRMMWGAKVKLPLDMPDDILKDAIDTSREVLDKCHDFEAEGLASAEKIKRHLDEQWDPHWHVVIGRNFGSFVTHET 83          
BLAST of mRNA_D-mesarthrocarpus_Contig10620.1.1 vs. uniprot
Match: A0A7S2W886_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W886_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.050e-35
Identity = 54/83 (65.06%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    1 MGEEVPDWTMMWGAKVKMPIDMKDDMLRDSINTCRDVLDKCSDFEAEGLAAAESIKKHFDEKWNSNWHVIIGRNFGSFVTHET 249
            MGEEVP+W MMWGAKVK P+D+ DDML+D+I T + ++ + +DFEAEG+  AE IK+ FDE+W   WHVIIG+NFGSFVTHET
Sbjct:    1 MGEEVPEWQMMWGAKVKTPVDVPDDMLKDAILTSQRLIGEATDFEAEGVDVAEKIKREFDERWTPYWHVIIGKNFGSFVTHET 83          
BLAST of mRNA_D-mesarthrocarpus_Contig10620.1.1 vs. uniprot
Match: A0A7R9U0Z2_9STRA (Dynein light chain (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0Z2_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.460e-33
Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 MGEEVPDWTMMWGAKVKMPIDMKDDMLRDSINTCRDVLDKCSDFEAEGLAAAESIKKHFDEKWNSNWHVIIGRNFGSFVT 240
            M EE+ DW+ MWGA+V+ P DM DDML+D+I T R +LD+C DF+A+GL AAE IK  FD+KW  NWHV++GR FGS+VT
Sbjct:   26 MSEEIQDWSTMWGARVRQPCDMTDDMLKDAIETTRSILDECPDFDADGLKAAEMIKYSFDKKWTPNWHVVVGRGFGSYVT 105          
BLAST of mRNA_D-mesarthrocarpus_Contig10620.1.1 vs. uniprot
Match: A0A7S1TPD3_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPD3_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.430e-32
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 1
Query:    1 MGE-EVPDWTMMWGAKVKMPIDMKDDMLRDSINTCRDVLDKCSDFEAEGLAAAESIKKHFDEKWNSNWHVIIGRNFGSFVTHET 249
            MG+ E+ +W+ MWGA+VK+P DM DDML+D++ T R V ++  DFE +GL AAE+IK  FDEKW  NWHV++GR FGSFVTHET
Sbjct:    1 MGDGEIQEWSTMWGARVKVPCDMGDDMLKDAVETTRSVFEEFPDFENDGLKAAEAIKLAFDEKWTPNWHVVVGRGFGSFVTHET 84          
BLAST of mRNA_D-mesarthrocarpus_Contig10620.1.1 vs. uniprot
Match: A0A7S1CI82_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI82_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.650e-27
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 MGEEVP-DWTMMWGAKVKMPIDMKDDMLRDSINTCRDVLDKCSDFEAEGLAAAESIKKHFDEKWNSNWHVIIGRNFGSFVTHE 246
            MGE  P +W  MWGAKVK P D+ DDML D+I   R  L+   D+E+EG A  + +KK FDEKW  +WH ++G NFGSFVTHE
Sbjct:    1 MGESAPVEWKHMWGAKVKWPSDLPDDMLEDAITVTRAALEGIEDWESEGDAVVDKLKKTFDEKWGPHWHAVVGTNFGSFVTHE 83          
BLAST of mRNA_D-mesarthrocarpus_Contig10620.1.1 vs. uniprot
Match: A0A7S2WLS4_9STRA (Dynein light chain n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLS4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.080e-26
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 MGEEVPDWTMMWGAKVKMPIDMKDDMLRDSINTCRDVLDKCSDFEAEGLAAAESIKKHFDEKWNSNWHVIIGRNFGSFVTHET 249
            MGEEV +W  +WGAKVK P++M DD+L+D+I T  + L  C +FE+ G  A ++IK H D KW+ +W   IGRNFGS V+HET
Sbjct:    3 MGEEVREWQTIWGAKVKTPVEMPDDILKDAITTVTNELAACENFESNGNLAVQNIKDHMDHKWSPHWCCFIGRNFGSKVSHET 85          
BLAST of mRNA_D-mesarthrocarpus_Contig10620.1.1 vs. uniprot
Match: H3GHN7_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3GHN7_PHYRM)

HSP 1 Score: 95.5 bits (236), Expect = 8.120e-24
Identity = 46/82 (56.10%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   10 EVPDWTMMWGAKVKMPIDMKDDMLRDSINTCRDVLDK--CSDFEAEGLAAAESIKKHFDEKWNSNWHVIIGRNFGSFVTHET 249
            E P W  MWGAKVKMP DM+DD+L D+I      L K    ++E  GLA  E IK H DE W+ +W V IGRNFGSFVTH T
Sbjct:    3 EAPSWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLTKYDTEEWEKNGLAVCEEIKAHLDEAWDPHWVVCIGRNFGSFVTHVT 84          
BLAST of mRNA_D-mesarthrocarpus_Contig10620.1.1 vs. uniprot
Match: A0A2D4BQP4_PYTIN (Dynein light chain n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQP4_PYTIN)

HSP 1 Score: 95.1 bits (235), Expect = 1.150e-23
Identity = 45/82 (54.88%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   10 EVPDWTMMWGAKVKMPIDMKDDMLRDSINTCRDVLDK--CSDFEAEGLAAAESIKKHFDEKWNSNWHVIIGRNFGSFVTHET 249
            E P W  MWGAKVKMP DM+DD+L D+I      L K    ++E +GL+  E IK H DE W  +W V IGRNFGSFVTH T
Sbjct:    3 EAPSWQHMWGAKVKMPCDMEDDVLEDTIKIVTSRLTKYDTEEWETKGLSVCEEIKAHLDETWEPHWVVCIGRNFGSFVTHVT 84          
BLAST of mRNA_D-mesarthrocarpus_Contig10620.1.1 vs. uniprot
Match: A0A5D6XID8_9STRA (Dynein light chain n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XID8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.420e-23
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   10 EVPDWTMMWGAKVKMPIDMKDDMLRDSINTCRDVLDK--CSDFEAEGLAAAESIKKHFDEKWNSNWHVIIGRNFGSFVTHET 249
            E P+W  MWGAKVKMP DM+DD+L D+I      L K    ++E +GL   E IK H DE W  +W V IGRNFGS+VTH T
Sbjct:    3 EAPNWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLAKYDTEEWEKQGLTVCEEIKAHMDELWEPHWVVCIGRNFGSYVTHVT 84          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10620.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1V9_ECTSI3.860e-4780.95Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A836CJA1_9STRA1.140e-3974.03Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2W886_9STRA1.050e-3565.06Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7R9U0Z2_9STRA4.460e-3361.25Dynein light chain (Fragment) n=1 Tax=Pinguiococcu... [more]
A0A7S1TPD3_9STRA2.430e-3260.71Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A7S1CI82_9STRA3.650e-2755.42Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014... [more]
A0A7S2WLS4_9STRA3.080e-2653.01Dynein light chain n=1 Tax=Eucampia antarctica Tax... [more]
H3GHN7_PHYRM8.120e-2456.10Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re... [more]
A0A2D4BQP4_PYTIN1.150e-2354.88Dynein light chain n=1 Tax=Pythium insidiosum TaxI... [more]
A0A5D6XID8_9STRA9.420e-2353.66Dynein light chain n=1 Tax=Pythium brassicum TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10620contigD-mesarthrocarpus_Contig10620:246..1060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1V9
PFAMsDynein_light
Model size255
Max annot lvl2759|Eukaryota
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.33e-48
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota
Descriptionpositive regulation of ATP-dependent microtubule motor activity, plus-end-directed
Cds size255
COG categoryS
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789197.9718237-CDS-D-mesarthrocarpus_Contig10620:245..3581680789197.9718237-CDS-D-mesarthrocarpus_Contig10620:245..358Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10620 246..358 -
1680789197.9889193-CDS-D-mesarthrocarpus_Contig10620:918..10601680789197.9889193-CDS-D-mesarthrocarpus_Contig10620:918..1060Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10620 919..1060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10620.1.1prot_D-mesarthrocarpus_Contig10620.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10620 246..1060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10620.1.1

>prot_D-mesarthrocarpus_Contig10620.1.1 ID=prot_D-mesarthrocarpus_Contig10620.1.1|Name=mRNA_D-mesarthrocarpus_Contig10620.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=85bp
MGEEVPDWTMMWGAKVKMPIDMKDDMLRDSINTCRDVLDKCSDFEAEGLA
AAESIKKHFDEKWNSNWHVIIGRNFGSFVTHETT*
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mRNA from alignment at D-mesarthrocarpus_Contig10620:246..1060-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10620.1.1 ID=mRNA_D-mesarthrocarpus_Contig10620.1.1|Name=mRNA_D-mesarthrocarpus_Contig10620.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=815bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10620:246..1060- (Discosporangium mesarthrocarpum MT17_79)
ATGGGCGAAGAAGTCCCGGACTGGACCATGATGTGGGGAGCCAAGGTAAA GATGCCCATCGACATGAAGGATGATATGCTGCGGGATTCTATCAATACCT GCAGAGATGTACTTGACAAGTGCAGTGACTTCGAGGCTGAAGGTATGGAT TGCAAAAGCGATACATGGTCAGCTCAGTGTAAGATCTAAATTTCCATTGA GTTTGTTTTCGCATGTCCGAACATCTTGTGTAAAGACGGCGTGAAAGCCC AAAATGCACTCGTTCTCGGATGGCTTTCCGATGTGTTGCATTTTTCGGCG TCCATCAACATAAAATGTTTCAGCAGGGGTCATGGTCGTAGCTTCTGCCC TGCAACTGCTGAAGGGGTTTAAAATACTCATCCATCAATGTACTCTGTTC GAAGTCGTGGTTGCTCCACGGTGCAGGGTGTGGATCACACAAACTCTCTA AAGATTTATGCTGCATTCCAAACAAGAATTTCACGTTGCTCTTGAAGAGT ATACAGTCAACGAGAACAAAAAGATATGCTGAGCAGTTCAAAGCAACTGC GGGTATATTGAAGGCACTTTCTGTGCGGGTAGCTTCTGAAGAACTGTAAG GTGGGTATCTTTTACTTCTCACACGGAGATTGAACCCCCCTCTTCCACCG CTAGACAGAGCTGACGTTGAGCCAGCTCCCATGCCCTACCCCTATAATGC AGGTCTCGCTGCAGCAGAGAGTATCAAGAAGCACTTCGATGAAAAGTGGA ACTCGAACTGGCATGTTATCATTGGCCGAAACTTTGGATCTTTCGTGACA CATGAGACAACGTAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10620:246..1060-

>mRNA_D-mesarthrocarpus_Contig10620.1.1 ID=mRNA_D-mesarthrocarpus_Contig10620.1.1|Name=mRNA_D-mesarthrocarpus_Contig10620.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=255bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10620:246..1060- (Discosporangium mesarthrocarpum MT17_79)
ATGGGCGAAGAAGTCCCGGACTGGACCATGATGTGGGGAGCCAAGGTAAA
GATGCCCATCGACATGAAGGATGATATGCTGCGGGATTCTATCAATACCT
GCAGAGATGTACTTGACAAGTGCAGTGACTTCGAGGCTGAAGGTCTCGCT
GCAGCAGAGAGTATCAAGAAGCACTTCGATGAAAAGTGGAACTCGAACTG
GCATGTTATCATTGGCCGAAACTTTGGATCTTTCGTGACACATGAGACAA
CGTAA
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