mRNA_D-mesarthrocarpus_Contig10619.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10619.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10619.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10619.1.1 vs. uniprot
Match: A0A2D7FKX7_9PROT (ATP synthase epsilon chain n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FKX7_9PROT)

HSP 1 Score: 208 bits (529), Expect = 4.310e-67
Identity = 110/131 (83.97%), Postives = 118/131 (90.08%), Query Frame = 1
Query:    1 MPDPFTFDLVSPEKLLLSEDVEMVVVPGAEGDFGVLIGHAPLISALRPGVIDTYTGTTVEKRIFVAGGFAEVTGERCTVLAEEAMPVEDIDPAEAEARIASAREALGEADNDLARGQAETALAIGEAMAAA 393
            MPDPFTFDLVSPEKLLLSE+VEMVVVPG EGDFGVLIGH+PLIS LRPGVIDTYT   VE+RIFVAGGFAEVTGERCTVLAEEAMPVEDID A+AE RIA AREAL EA+NDL R +A+ ALA+GEAM AA
Sbjct:    1 MPDPFTFDLVSPEKLLLSENVEMVVVPGVEGDFGVLIGHSPLISELRPGVIDTYTDNKVEERIFVAGGFAEVTGERCTVLAEEAMPVEDIDAAKAETRIAVAREALVEANNDLTRAKAQAALAVGEAMVAA 131          
BLAST of mRNA_D-mesarthrocarpus_Contig10619.1.1 vs. uniprot
Match: A0A2D8PRD0_9PROT (ATP synthase epsilon chain n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PRD0_9PROT)

HSP 1 Score: 203 bits (517), Expect = 3.000e-65
Identity = 103/128 (80.47%), Postives = 118/128 (92.19%), Query Frame = 1
Query:    1 MPDPFTFDLVSPEKLLLSEDVEMVVVPGAEGDFGVLIGHAPLISALRPGVIDTYTGTTVEKRIFVAGGFAEVTGERCTVLAEEAMPVEDIDPAEAEARIASAREALGEADNDLARGQAETALAIGEAM 384
            MPDPFTFDLVSPEKLLLSEDVEMVVVPGAEGDFGVL+GHAPLISALRPGVIDTY+GT+V+KRIFVAGGFAEVTGERCTVLAEEA+PV DID  EA +R+++AREA+G AD++ AR  AET L++ E+M
Sbjct:    1 MPDPFTFDLVSPEKLLLSEDVEMVVVPGAEGDFGVLVGHAPLISALRPGVIDTYSGTSVDKRIFVAGGFAEVTGERCTVLAEEAVPVSDIDTGEAASRLSAAREAVGGADSETARSLAETELSVAESM 128          
BLAST of mRNA_D-mesarthrocarpus_Contig10619.1.1 vs. uniprot
Match: A0A3D2BNU7_9PROT (ATP synthase epsilon chain n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BNU7_9PROT)

HSP 1 Score: 191 bits (484), Expect = 2.990e-60
Identity = 99/128 (77.34%), Postives = 110/128 (85.94%), Query Frame = 1
Query:    1 MPDPFTFDLVSPEKLLLSEDVEMVVVPGAEGDFGVLIGHAPLISALRPGVIDTYTGTTVEKRIFVAGGFAEVTGERCTVLAEEAMPVEDIDPAEAEARIASAREALGEADNDLARGQAETALAIGEAM 384
            M +PF+F+LVSPEKLLLS+DV MVVVPGAEGDFGVL+GHAPLIS+LRPGVIDTY G  VEKRIFVAGGFAEVT ERCTVLAEEA+PVEDID + AE RI +A EA+ EAD D AR  AET LA+ EAM
Sbjct:    1 MAEPFSFELVSPEKLLLSDDVTMVVVPGAEGDFGVLVGHAPLISSLRPGVIDTYNGDKVEKRIFVAGGFAEVTAERCTVLAEEAVPVEDIDASAAEERIKAANEAISEADKDTARNAAETELAVAEAM 128          
BLAST of mRNA_D-mesarthrocarpus_Contig10619.1.1 vs. uniprot
Match: A0A2D8G7K2_9PROT (ATP synthase epsilon chain n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G7K2_9PROT)

HSP 1 Score: 180 bits (456), Expect = 5.490e-56
Identity = 95/135 (70.37%), Postives = 111/135 (82.22%), Query Frame = 1
Query:    1 MPDPFTFDLVSPEKLLLSEDVEMVVVPGAEGDFGVLIGHAPLISALRPGVIDTYTGTTVEKRIFVAGGFAEVTGERCTVLAEEAMPVEDIDPAEAEARIASAREALGEADNDLARGQAETALAIGEAMAAAKQSA 405
            M + F+F+LVSPEKLLL+E+V+MVVVPGAEGDFGVL+GHAPLIS+LRPGVIDTY G  V  RIFVAGGFAEVTGERCTVLAEEA+PV+DID A AE R+  A+EA+  ADND  R  AE  L + EAM AA ++A
Sbjct:    1 MAEEFSFELVSPEKLLLAEEVDMVVVPGAEGDFGVLVGHAPLISSLRPGVIDTYNGGKVADRIFVAGGFAEVTGERCTVLAEEAIPVKDIDSANAEERLKVAKEAISGADNDTLRNAAEIELTVAEAMLAAGRAA 135          
BLAST of mRNA_D-mesarthrocarpus_Contig10619.1.1 vs. uniprot
Match: A0A2S6QED3_9PROT (ATP synthase epsilon chain n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QED3_9PROT)

HSP 1 Score: 168 bits (426), Expect = 2.020e-51
Identity = 91/131 (69.47%), Postives = 105/131 (80.15%), Query Frame = 1
Query:    1 MPDPFTFDLVSPEKLLLSEDVEMVVVPGAEGDFGVLIGHAPLISALRPGVIDTYTGTTVEKRIFVAGGFAEVTGERCTVLAEEAMPVEDIDPAEAEARIASAREALGEADNDLARGQAETALAIGEAMAAA 393
            M + F+F+LVSPEKLLLS+DVEMVVVPG EGDFGVL+GH+PLIS+LRPGVI TY    VEKRIFVAGGFAEVTGERCTV+AEEA+ V+DID A  E RI  A E +  AD+D+AR  AET L I + M AA
Sbjct:    1 MAESFSFELVSPEKLLLSDDVEMVVVPGTEGDFGVLVGHSPLISSLRPGVIVTYKDNKVEKRIFVAGGFAEVTGERCTVMAEEALSVQDIDIAVVEQRIKVANEGILGADSDIARNAAETDLCIAKEMLAA 131          
BLAST of mRNA_D-mesarthrocarpus_Contig10619.1.1 vs. uniprot
Match: A0A317I4D8_9PROT (ATP synthase epsilon chain n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317I4D8_9PROT)

HSP 1 Score: 150 bits (378), Expect = 4.300e-44
Identity = 80/127 (62.99%), Postives = 100/127 (78.74%), Query Frame = 1
Query:    1 MPDPFTFDLVSPEKLLLSEDVEMVVVPGAEGDFGVLIGHAPLISALRPGVIDTYTGTTVEKRIFVAGGFAEVTGERCTVLAEEAMPVEDIDPAEAEARIASAREALGEADNDLARGQAETALAIGEA 381
            M D   F+LV+PE+L++SE V+MVVVPG+EGDFGVL GHAPLIS +RPGVI+TY G  V+ RIFVAGGFAEVT ERCTVLAEEA+PV ++D ++ E+  A+ARE +G A +   R  AE ALA+ EA
Sbjct:    1 MGDQVQFELVTPERLVVSEPVDMVVVPGSEGDFGVLPGHAPLISTVRPGVIETYAGKAVKDRIFVAGGFAEVTRERCTVLAEEAVPVAELDRSQIESEAAAAREDIGLARDAGERAAAERALAVAEA 127          
BLAST of mRNA_D-mesarthrocarpus_Contig10619.1.1 vs. uniprot
Match: A0A6N7F5G4_9PROT (ATP synthase epsilon chain n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7F5G4_9PROT)

HSP 1 Score: 150 bits (378), Expect = 4.440e-44
Identity = 82/131 (62.60%), Postives = 94/131 (71.76%), Query Frame = 1
Query:    1 MPDPFTFDLVSPEKLLLSEDVEMVVVPGAEGDFGVLIGHAPLISALRPGVIDTYTGTTVEKRIFVAGGFAEVTGERCTVLAEEAMPVEDIDPAEAEARIASAREALGEADNDLARGQAETALAIGEAMAAA 393
            M D   F+LVSPE+LL+S  VEMVVVPGAEGDFGVL GHAPLIS +RPGVI TY    V  RIFVAGGFAEVT  RCTVLA+EA+ +E  D A  E R+ +ARE   +ADND  R  AE  +A+ EA  AA
Sbjct:    1 MADTVEFELVSPERLLVSASVEMVVVPGAEGDFGVLPGHAPLISTVRPGVISTYEDGRVVSRIFVAGGFAEVTAARCTVLADEAVELEGADRAAVEGRLRAAREEFADADNDAERAAAEAEIAVAEAFLAA 131          
BLAST of mRNA_D-mesarthrocarpus_Contig10619.1.1 vs. uniprot
Match: A0A7W6W9F8_9PROT (ATP synthase epsilon chain n=1 Tax=Roseospira visakhapatnamensis TaxID=390880 RepID=A0A7W6W9F8_9PROT)

HSP 1 Score: 149 bits (377), Expect = 5.560e-44
Identity = 76/131 (58.02%), Postives = 101/131 (77.10%), Query Frame = 1
Query:    1 MPDPFTFDLVSPEKLLLSEDVEMVVVPGAEGDFGVLIGHAPLISALRPGVIDTYTGTTVEKRIFVAGGFAEVTGERCTVLAEEAMPVEDIDPAEAEARIASAREALGEADNDLARGQAETALAIGEAMAAA 393
            M +   F+LVSP +LL+SE VEMVVVPG EGDFGVL  HAP++S +RPGVID Y G  VE+R+F+AGGFAEVT ERCT+LAEEA P+ ++   +A AR+ +ARE L EA+ D+A+G+A  A+ + EA++ A
Sbjct:    1 MTETTEFELVSPARLLMSEPVEMVVVPGVEGDFGVLPRHAPMLSTVRPGVIDVYKGGQVEQRLFIAGGFAEVTEERCTILAEEAFPLTEVSADDARARLDAAREDLEEAETDMAKGRAAQAVVVAEALSRA 131          
BLAST of mRNA_D-mesarthrocarpus_Contig10619.1.1 vs. uniprot
Match: UPI00166E2ADF (F0F1 ATP synthase subunit epsilon n=1 Tax=Terasakiella brassicae TaxID=1634917 RepID=UPI00166E2ADF)

HSP 1 Score: 148 bits (373), Expect = 2.260e-43
Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 1
Query:    1 MPDPFTFDLVSPEKLLLSEDVEMVVVPGAEGDFGVLIGHAPLISALRPGVIDTYTGTTVEKRIFVAGGFAEVTGERCTVLAEEAMPVEDIDPAEAEARIASAREALGEADNDLARGQAETALAIGEAMAAA 393
            M D   F+LVSP KLLLSEDVEMVVVPG EGDFGVL GH P+++ +RPG+ID Y    + KRIFV GGFAEV+G RC VLAEEA+ +++++   AEAR+  A +AL  ADND+A+  AE  L   EAM AA
Sbjct:    1 MTDTVQFELVSPAKLLLSEDVEMVVVPGGEGDFGVLPGHTPMLTTVRPGIIDIYENDKIAKRIFVEGGFAEVSGTRCAVLAEEAIALDELNRDHAEARLQKANDALQAADNDIAKKDAERELRAAEAMLAA 131          
BLAST of mRNA_D-mesarthrocarpus_Contig10619.1.1 vs. uniprot
Match: A0A2E4XXI7_9PROT (ATP synthase epsilon chain n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4XXI7_9PROT)

HSP 1 Score: 147 bits (370), Expect = 7.520e-43
Identity = 79/132 (59.85%), Postives = 94/132 (71.21%), Query Frame = 1
Query:    7 DPFTFDLVSPEKLLLSEDVEMVVVPGAEGDFGVLIGHAPLISALRPGVIDTYTGTTVEKRIFVAGGFAEVTGERCTVLAEEAMPVEDIDPAEAEARIASAREALGEADNDLARGQAETALAIGEAMAAAKQS 402
            D   F+LVSPEKLLLS +V+MVV+PGAEGD GVL  H+P I+ +RPG I  Y G  V  RIF+AGGFAEV+  RCTVLAEEAMPVEDID A AE  ++ AR+ +G A+ND  R  AETA  + EA   A  S
Sbjct:    4 DKVEFELVSPEKLLLSREVDMVVIPGAEGDMGVLPQHSPAITTVRPGTIVVYEGGAVTDRIFIAGGFAEVSDNRCTVLAEEAMPVEDIDKASAEQALSDARDDVGAAENDSQRNAAETAATVAEAKIQAVDS 135          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10619.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FKX7_9PROT4.310e-6783.97ATP synthase epsilon chain n=1 Tax=Rhodospirillace... [more]
A0A2D8PRD0_9PROT3.000e-6580.47ATP synthase epsilon chain n=1 Tax=Rhodospirillace... [more]
A0A3D2BNU7_9PROT2.990e-6077.34ATP synthase epsilon chain n=2 Tax=Rhodospirillace... [more]
A0A2D8G7K2_9PROT5.490e-5670.37ATP synthase epsilon chain n=1 Tax=Alphaproteobact... [more]
A0A2S6QED3_9PROT2.020e-5169.47ATP synthase epsilon chain n=1 Tax=Alphaproteobact... [more]
A0A317I4D8_9PROT4.300e-4462.99ATP synthase epsilon chain n=1 Tax=Proteobacteria ... [more]
A0A6N7F5G4_9PROT4.440e-4462.60ATP synthase epsilon chain n=1 Tax=Alphaproteobact... [more]
A0A7W6W9F8_9PROT5.560e-4458.02ATP synthase epsilon chain n=1 Tax=Roseospira visa... [more]
UPI00166E2ADF2.260e-4359.54F0F1 ATP synthase subunit epsilon n=1 Tax=Terasaki... [more]
A0A2E4XXI7_9PROT7.520e-4359.85ATP synthase epsilon chain n=1 Tax=Rhodospirillace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10619contigD-mesarthrocarpus_Contig10619:448..858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123355.JHYO01000028_gene2709
Preferred nameatpC
PFAMsATP-synt_DE_N
Model size411
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02113,ko:K02114
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG ModuleM00157
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
Exons1
Evalue2.46e-42
EggNOG OGsCOG0355@1|root,COG0355@2|Bacteria,1RHE4@1224|Proteobacteria,2UBXX@28211|Alphaproteobacteria,36YMJ@31993|Methylocystaceae
DescriptionATP synthase, Delta/Epsilon chain, beta-sandwich domain
Cds size411
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789197.5960503-CDS-D-mesarthrocarpus_Contig10619:447..8581680789197.5960503-CDS-D-mesarthrocarpus_Contig10619:447..858Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10619 448..858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10619.1.1prot_D-mesarthrocarpus_Contig10619.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10619 448..858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10619.1.1

>prot_D-mesarthrocarpus_Contig10619.1.1 ID=prot_D-mesarthrocarpus_Contig10619.1.1|Name=mRNA_D-mesarthrocarpus_Contig10619.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=137bp
MPDPFTFDLVSPEKLLLSEDVEMVVVPGAEGDFGVLIGHAPLISALRPGV
IDTYTGTTVEKRIFVAGGFAEVTGERCTVLAEEAMPVEDIDPAEAEARIA
SAREALGEADNDLARGQAETALAIGEAMAAAKQSAA*
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mRNA from alignment at D-mesarthrocarpus_Contig10619:448..858+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10619.1.1 ID=mRNA_D-mesarthrocarpus_Contig10619.1.1|Name=mRNA_D-mesarthrocarpus_Contig10619.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=411bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10619:448..858+ (Discosporangium mesarthrocarpum MT17_79)
ATGCCTGATCCGTTTACATTCGATCTGGTTTCTCCCGAAAAGCTGCTGCT TTCGGAAGACGTCGAGATGGTTGTGGTGCCCGGCGCCGAGGGTGATTTCG GTGTGCTGATCGGCCACGCGCCGTTGATCTCGGCGCTCCGGCCCGGCGTT ATCGATACCTATACCGGTACGACTGTTGAGAAACGGATATTCGTCGCCGG TGGTTTTGCCGAGGTAACGGGCGAGCGATGCACCGTCCTGGCAGAAGAAG CCATGCCGGTGGAGGATATCGACCCGGCCGAGGCCGAAGCACGTATTGCT TCCGCCCGTGAAGCGCTGGGCGAGGCAGATAACGACCTTGCCCGCGGCCA GGCAGAAACGGCGCTCGCCATCGGCGAGGCCATGGCTGCCGCAAAACAGT CAGCAGCCTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10619:448..858+

>mRNA_D-mesarthrocarpus_Contig10619.1.1 ID=mRNA_D-mesarthrocarpus_Contig10619.1.1|Name=mRNA_D-mesarthrocarpus_Contig10619.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=411bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10619:448..858+ (Discosporangium mesarthrocarpum MT17_79)
ATGCCTGATCCGTTTACATTCGATCTGGTTTCTCCCGAAAAGCTGCTGCT
TTCGGAAGACGTCGAGATGGTTGTGGTGCCCGGCGCCGAGGGTGATTTCG
GTGTGCTGATCGGCCACGCGCCGTTGATCTCGGCGCTCCGGCCCGGCGTT
ATCGATACCTATACCGGTACGACTGTTGAGAAACGGATATTCGTCGCCGG
TGGTTTTGCCGAGGTAACGGGCGAGCGATGCACCGTCCTGGCAGAAGAAG
CCATGCCGGTGGAGGATATCGACCCGGCCGAGGCCGAAGCACGTATTGCT
TCCGCCCGTGAAGCGCTGGGCGAGGCAGATAACGACCTTGCCCGCGGCCA
GGCAGAAACGGCGCTCGCCATCGGCGAGGCCATGGCTGCCGCAAAACAGT
CAGCAGCCTGA
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