mRNA_D-mesarthrocarpus_Contig10614.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10614.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10614.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10614.1.1 vs. uniprot
Match: D7FVP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP2_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.370e-38
Identity = 71/102 (69.61%), Postives = 91/102 (89.22%), Query Frame = 2
Query:  281 DIDLNKAIANARSNLAEGKSPGAGLDNAFDQADAAYADLLVTSMDDQGLELDEEEVEELAQAGMMDQESTKKRSKGILGDVMDVFDALGGGAHIVRREDGSL 586
            DIDL+ A+ANAR+NLA G SPGAGL++AFDQADAA+ADL+VTS+DDQG+ LD+EEV+ELAQ+GMMDQ+ST K+SKG+  D+ DV  AL GGAHIV+R+DG++
Sbjct:   79 DIDLSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEEVQELAQSGMMDQDSTSKKSKGLFSDMKDVLGALSGGAHIVKRDDGTV 180          
BLAST of mRNA_D-mesarthrocarpus_Contig10614.1.1 vs. uniprot
Match: A0A835ZCH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 8.230e-31
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  278 GDIDLNKAIANARSNLAEGKSPGAGLDNAFDQADAAYADLLVTSMDDQGLELDEEEVEELAQAGMMDQESTKKRSKGILGDVMDVFDALGGGAHIVRREDGSL 586
            GDI+L KA+ NAR NL EGKSPGAGL  A +QADAAYADL++TS+D + L L +E++ EL +AGMMD +ST +RS+G  GD+ DVF+AL GGAHI R++DG +
Sbjct:    7 GDIELAKALDNARRNLEEGKSPGAGLATAEEQADAAYADLILTSVDQKHLSLGDEDLAELTKAGMMDSKSTSRRSRGWAGDIADVFNALKGGAHIQRQKDGRI 109          
BLAST of mRNA_D-mesarthrocarpus_Contig10614.1.1 vs. uniprot
Match: C1DZJ8_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZJ8_MICCC)

HSP 1 Score: 94.7 bits (234), Expect = 6.190e-20
Identity = 51/100 (51.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query:  287 DLNKAIANARSNLAEGKSPGAGLDNAFDQADAAYADLLVTSMDDQGLELDEEEVEELAQAGMMDQESTKKRSKGILGDVMDVFDALGGGAHIVRREDGSL 586
            D++KA+ NAR+    G SPGAGL +A  QA+AA+AD++ T++D  G  LD EE+ +L++ G MD+ES  K+S GILGDV D+F AL  GAHIV+++ G +
Sbjct:   45 DISKAMENARACEKSGLSPGAGLADADAQAEAAFADMINTTVDVTGEALDSEELSQLSRGGKMDEESKSKKSGGILGDVRDLFGALSKGAHIVKQKGGRV 144          
BLAST of mRNA_D-mesarthrocarpus_Contig10614.1.1 vs. uniprot
Match: A0A7S0T7R1_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T7R1_9RHOD)

HSP 1 Score: 94.0 bits (232), Expect = 5.400e-19
Identity = 54/107 (50.47%), Postives = 75/107 (70.09%), Query Frame = 2
Query:  275 DGDID-LNKAIANARSNLAEGKSPGAGLDNAFDQADAAYADLLVTSMDDQGLELDEEEVEELAQAG--MMDQESTKKRSKGILGDVMDVFDALGGGAHIVRREDGSL 586
            DG++  L +A+  A++N   G+SPGAGL  A +QA AA+ADL+ TS   Q  EL E+E+EE AQ G  M ++ S K++SKG LGD +D+  ALG GAHIVR++DG +
Sbjct:   99 DGEVSRLKRAMEAAKANEERGESPGAGLGTAEEQAYAAFADLINTSAAQQNRELSEQELEEFAQRGGNMWEEGSKKRKSKGWLGDFVDIIGALGKGAHIVRKDDGRI 205          
BLAST of mRNA_D-mesarthrocarpus_Contig10614.1.1 vs. uniprot
Match: A0A7R9XNM3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7R9XNM3_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 4.500e-16
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:  290 LNKAIANARSNLAEGKSPGAGLDNAFDQADAAYADLLVTSMDDQGLE-LDEEEVEELAQAGMMDQESTKKRSKGILGDVMDVFDALGGGAHIVRREDGSL 586
            L  A++NAR N  EG SPGAGL  A +QA+AA+ADL+ TS+D      L   E+ EL++ G MD+ S  ++S G+L DV+ +F+ALG GAHIV+++DG +
Sbjct:  119 LEFAMSNARKNSLEGLSPGAGLMTAQEQAEAAFADLINTSLDGADRNALTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEALGKGAHIVKQKDGRV 218          
BLAST of mRNA_D-mesarthrocarpus_Contig10614.1.1 vs. uniprot
Match: A0A5J4YNM4_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YNM4_PORPP)

HSP 1 Score: 82.0 bits (201), Expect = 1.320e-15
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 2
Query:  290 LNKAIANARSNLAEGKSPGAGLDNAFDQADAAYADLLVTSMDDQGLELDEEEVEELAQAG--MMDQESTKKRSKGILGDVMDVFDALGGGAHIVRREDGSL 586
            L KA+A AR N   G+SPGA  +++ D A AAYADL+V S   Q  EL + E+E  A  G  M ++ S +++SKG +GD +D+  AL GGAHIVR++DG +
Sbjct:   14 LKKAMALARENQRRGESPGANAESSEDAAYAAYADLIVQSSSQQQRELSDSELEVFAARGGQMWEEGSKQRKSKGPVGDFVDMIKALFGGAHIVRQDDGRI 114          
BLAST of mRNA_D-mesarthrocarpus_Contig10614.1.1 vs. uniprot
Match: C1MJA6_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MJA6_MICPC)

HSP 1 Score: 83.6 bits (205), Expect = 1.390e-15
Identity = 47/96 (48.96%), Postives = 67/96 (69.79%), Query Frame = 2
Query:  299 AIANARSNLAEGKSPGAGLDNAFDQADAAYADLLVTSMDDQGLELDEEEVEELAQAGMMDQESTKKRSKGILGDVMDVFDALGGGAHIVRREDGSL 586
            ++A AR+  A G SPGAGL +A DQA+AA+AD++ T++D  G  LD +    LA+ G MD  ST ++S G+  DV D+F ALG GAHIVR+++G +
Sbjct:   72 SMAAARACEASGMSPGAGLSSAEDQAEAAFADMINTTVDVTGEALDADARARLAEGGRMDGASTSRKSGGMWSDVRDLFGALGKGAHIVRQKNGRV 167          
BLAST of mRNA_D-mesarthrocarpus_Contig10614.1.1 vs. uniprot
Match: A0A830HV35_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HV35_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 5.290e-15
Identity = 47/96 (48.96%), Postives = 68/96 (70.83%), Query Frame = 2
Query:  302 IANARSNLAEGKSPGAGLDNAFDQADAAYADLLVTSMDDQGLE-LDEEEVEELAQAGMMDQESTKKRSKGILGDVMDVFDALGGGAHIVRREDGSL 586
            ++NAR N  EG SPGAGL  A +QA+AA+ADL+ TS+D      L   E+ EL++ G MD+ S  ++S G+L DV+ +F+ALG GAHIV+++DG +
Sbjct:   71 MSNARKNSLEGLSPGAGLMTAQEQAEAAFADLINTSLDGADRNALTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEALGKGAHIVKQKDGRV 166          
BLAST of mRNA_D-mesarthrocarpus_Contig10614.1.1 vs. uniprot
Match: D6PJB7_9ZZZZ (Uncharacterized protein n=1 Tax=uncultured organism MedDCM-OCT-S08-C998 TaxID=743643 RepID=D6PJB7_9ZZZZ)

HSP 1 Score: 77.8 bits (190), Expect = 3.630e-14
Identity = 42/103 (40.78%), Postives = 70/103 (67.96%), Query Frame = 2
Query:  290 LNKAIANARSNLAEGKSPGAGLDNAFDQADAAYADLLVTSMDDQ--GLELDEEEVEELAQAGMMDQESTKK----RSKGILGDVMDVFDALGGGAHIVRREDG 580
            + +A+A A+ N    +SPGAG+++AF+ A+AAYADL++TS+D +  G EL +E++  L++ G M ++  K+    +  G +GD+ +   AL GGAHIV+ E+G
Sbjct:    1 MEQALAQAKENRDSNQSPGAGVEDAFEAAEAAYADLILTSIDQRELGEELGDEDLAALSKGGTMWEDGAKEIRNDKKAGFMGDLFNALSALAGGAHIVKDENG 103          
BLAST of mRNA_D-mesarthrocarpus_Contig10614.1.1 vs. uniprot
Match: A0A7S2FA39_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2FA39_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 5.170e-10
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  290 LNKAIANARSNLAEGKSPGAGLDNAFDQADAAYADLLVTSMDDQGLE-LDEEEVEELAQAGMMDQESTKKRSKGILGDVMDVFDAL 544
            L  A++NAR N  EG SPGAGL  A +QA+AA+ADL+ TS+D      L   E+ EL++ G MD+ S  ++S G+L DV+ +F+AL
Sbjct:  122 LEFAMSNARKNSLEGLSPGAGLMTAEEQAEAAFADLINTSLDGADRNALTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEAL 207          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10614.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FVP2_ECTSI1.370e-3869.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCH3_9STRA8.230e-3161.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
C1DZJ8_MICCC6.190e-2051.00Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S0T7R1_9RHOD5.400e-1950.47Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A7R9XNM3_9CHLO4.500e-1649.00Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]
A0A5J4YNM4_PORPP1.320e-1547.52Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
C1MJA6_MICPC1.390e-1548.96Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A830HV35_9CHLO5.290e-1548.96Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
D6PJB7_9ZZZZ3.630e-1440.78Uncharacterized protein n=1 Tax=uncultured organis... [more]
A0A7S2FA39_9CHLO5.170e-1047.67Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10614contigD-mesarthrocarpus_Contig10614:1754..3141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVP2
Model size1077
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue4.06e-42
EggNOG OGs2D476@1|root,2SU5J@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_006010.1
Cds size480
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789197.3206317-UTR-D-mesarthrocarpus_Contig10614:1753..18621680789197.3206317-UTR-D-mesarthrocarpus_Contig10614:1753..1862Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10614 1754..1862 +
1680789197.3638065-UTR-D-mesarthrocarpus_Contig10614:2653..31411680789197.3638065-UTR-D-mesarthrocarpus_Contig10614:2653..3141Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10614 2654..3141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789197.336932-CDS-D-mesarthrocarpus_Contig10614:1862..21951680789197.336932-CDS-D-mesarthrocarpus_Contig10614:1862..2195Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10614 1863..2195 +
1680789197.3526332-CDS-D-mesarthrocarpus_Contig10614:2506..26531680789197.3526332-CDS-D-mesarthrocarpus_Contig10614:2506..2653Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10614 2507..2653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10614.1.1prot_D-mesarthrocarpus_Contig10614.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10614 1863..2653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10614.1.1

>prot_D-mesarthrocarpus_Contig10614.1.1 ID=prot_D-mesarthrocarpus_Contig10614.1.1|Name=mRNA_D-mesarthrocarpus_Contig10614.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=160bp
MKCILLVSLTLIGSDSFVVTPCYVSRQTARDHQHFSLNKKAQTSLGGRES
RLRCGDGDIDLNKAIANARSNLAEGKSPGAGLDNAFDQADAAYADLLVTS
MDDQGLELDEEEVEELAQAGMMDQESTKKRSKGILGDVMDVFDALGGGAH
IVRREDGSL*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10614:1754..3141+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10614.1.1 ID=mRNA_D-mesarthrocarpus_Contig10614.1.1|Name=mRNA_D-mesarthrocarpus_Contig10614.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1388bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10614:1754..3141+ (Discosporangium mesarthrocarpum MT17_79)
TCAGCAATATGAAAATTTGAAAAAGAAGCCGAAGACCTTGGGTACGAACT CTCAACCAAAGCAGTCCGAGCTCGAGCAGATACACATCTGAAGGACCTGA ACCTCTGCTATGAAATGTATTCTTCTGGTCTCTCTGACACTGATAGGGTC AGACTCCTTTGTTGTAACTCCATGCTATGTCTCAAGGCAAACCGCACGAG ACCATCAGCATTTCAGTTTAAATAAGAAGGCCCAGACCTCGCTTGGCGGA AGGGAATCACGGCTTCGTTGCGGGGACGGTGATATCGATCTCAACAAAGC GATTGCCAATGCCCGGTCTAATCTGGCCGAGGGGAAGTCACCGGGTGCGG GGCTCGATAATGCGTTCGATCAGGCGGATGCGGCCTATGCAGACCTCTTG GTCACATCAATGGACGACCAGGGGCTGGAACTGGACGAGGAGGTGAATCC TTTTTCGGCCTTGATATTTGCGCCCTTATTCATAAGTGGGATCTATCGTC AGTACAGCAAGACAATCGATCGACATGCCCCCAAACCAAGGATAAGAGGA CCTAATTTGTTAGCGACATTCTCCCTGATTCATCTAGCATCTCTGTGACT CTCACGTAGAGTTGATGTGCGCTTTGGTCCGTCCGCTCTTTCTTGCCCAA GAATGCCGTGCTGTTCCCCGCCCTAGTCTTTTGCTGATGTTGGTGAGAAG TCATAGCCTTTTTGAAAGCATGCAAGAAACCTGTCCTTACTGCATGTGGC CAGGAAGTGGAGGAGTTGGCGCAAGCAGGCATGATGGATCAAGAGAGCAC CAAAAAGCGGAGCAAGGGTATTTTAGGAGATGTGATGGACGTATTCGATG CGCTTGGAGGCGGCGCACACATCGTCAGGCGGGAAGATGGTTCACTGTGA CGAGGAATGTGGACCGGGATTCTTTTCAGATTTACTAGAGAGCCGTGGGC CCATTGTGGAGAGGGATTCACTTGCATGCAGACCATTCTTTTTGTCGCTG CATTTTTTATTTGCCCTATATGTAACTTTTCTCTTTAGGTGTAGTACATT GAATGAAATGGAAGAGTGTCACCTTTAGTCAGAGAGCTCGAGTGAACTCC ATGATTTTCAATTAATAGACAAGAGGCATGATAAAGCTTGTTCATAGATC CAGGAGTCCGCAGAGACTGCAAGCTATTGACATGATCCCTTGATGATGAC TGTTGTTCCCCATACCATTGCTCCCATCAATTTTCAGCATGGGCGTGCAC AGGCTGCAAATGATGCACCATCGCCACACCACAGCACTACAGTACTATAC AGTGCCTCATTTTCGAGCTCTTTCTACTACAGATTTCCTATTCCGCAGCA GCTGCCCATTTACTGCCGGTATAGAGGTAGGGAGAGCC
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10614:1754..3141+

>mRNA_D-mesarthrocarpus_Contig10614.1.1 ID=mRNA_D-mesarthrocarpus_Contig10614.1.1|Name=mRNA_D-mesarthrocarpus_Contig10614.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=480bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10614:1754..3141+ (Discosporangium mesarthrocarpum MT17_79)
ATGAAATGTATTCTTCTGGTCTCTCTGACACTGATAGGGTCAGACTCCTT
TGTTGTAACTCCATGCTATGTCTCAAGGCAAACCGCACGAGACCATCAGC
ATTTCAGTTTAAATAAGAAGGCCCAGACCTCGCTTGGCGGAAGGGAATCA
CGGCTTCGTTGCGGGGACGGTGATATCGATCTCAACAAAGCGATTGCCAA
TGCCCGGTCTAATCTGGCCGAGGGGAAGTCACCGGGTGCGGGGCTCGATA
ATGCGTTCGATCAGGCGGATGCGGCCTATGCAGACCTCTTGGTCACATCA
ATGGACGACCAGGGGCTGGAACTGGACGAGGAGGAAGTGGAGGAGTTGGC
GCAAGCAGGCATGATGGATCAAGAGAGCACCAAAAAGCGGAGCAAGGGTA
TTTTAGGAGATGTGATGGACGTATTCGATGCGCTTGGAGGCGGCGCACAC
ATCGTCAGGCGGGAAGATGGTTCACTGTGA
back to top