mRNA_D-mesarthrocarpus_Contig10610.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10610.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10610.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10610.1.1 vs. uniprot
Match: W7TSD6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSD6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.790e-10
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 3 
Query:  804 VPWGLFFSHPRLFAHSLPPSARLPPLPPC---VRSCIDGRLTSAWNWCSQLNTKPYFPVFKL 980
            +P GL  S      HSLPP    P          SCIDGRLTSAWNWCSQL++KP++P+FKL
Sbjct:   25 LPGGLLSSLTPSLPHSLPPFHSCPTGGDNFYDAGSCIDGRLTSAWNWCSQLSSKPFYPIFKL 86
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10610.1.1 vs. uniprot
Match: A0A482UVL1_9ARCH (DUF2009 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UVL1_9ARCH)

HSP 1 Score: 60.8 bits (146), Expect = 7.660e-8
Identity = 23/28 (82.14%), Postives = 27/28 (96.43%), Query Frame = 3 
Query:  897 SCIDGRLTSAWNWCSQLNTKPYFPVFKL 980
            SCIDGRLTSAWNWCSQL+ KPY+P+F+L
Sbjct:   98 SCIDGRLTSAWNWCSQLSRKPYYPLFRL 125
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10610.1.1 vs. uniprot
Match: A0A367IST3_RHIAZ (Uncharacterized protein (Fragment) n=1 Tax=Rhizopus azygosporus TaxID=86630 RepID=A0A367IST3_RHIAZ)

HSP 1 Score: 58.5 bits (140), Expect = 7.970e-8
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 3 
Query:  900 CIDGRLTSAWNWCSQLNTKPYFPVFKL 980
            CIDGRLTSAWNWCSQ+  KPYFP+F L
Sbjct:    1 CIDGRLTSAWNWCSQIEKKPYFPIFLL 27
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10610.1.1 vs. uniprot
Match: A0A7S0VDS6_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VDS6_9CRYP)

HSP 1 Score: 60.8 bits (146), Expect = 2.330e-7
Identity = 22/28 (78.57%), Postives = 27/28 (96.43%), Query Frame = 3 
Query:  897 SCIDGRLTSAWNWCSQLNTKPYFPVFKL 980
            SCIDGRLTSAWNWCSQ++ KP++P+FKL
Sbjct:  158 SCIDGRLTSAWNWCSQISAKPFYPIFKL 185
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10610.1.1 vs. uniprot
Match: D7FW41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW41_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 3.160e-7
Identity = 24/28 (85.71%), Postives = 28/28 (100.00%), Query Frame = 3 
Query:  897 SCIDGRLTSAWNWCSQLNTKPYFPVFKL 980
            SCIDGRLTSAWNWCSQLN+KP+FP+F+L
Sbjct:  543 SCIDGRLTSAWNWCSQLNSKPFFPMFQL 570
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10610.1.1 vs. uniprot
Match: A0A835Z3Z0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Z0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.690e-7
Identity = 24/28 (85.71%), Postives = 28/28 (100.00%), Query Frame = 3 
Query:  897 SCIDGRLTSAWNWCSQLNTKPYFPVFKL 980
            SCIDGRLTSAWNWCSQL++KP++PVFKL
Sbjct:  429 SCIDGRLTSAWNWCSQLSSKPFYPVFKL 456
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10610.1.1 vs. uniprot
Match: B5Y5N5_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y5N5_PHATC)

HSP 1 Score: 62.4 bits (150), Expect = 3.740e-7
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 3 
Query:  897 SCIDGRLTSAWNWCSQLNTKPYFPVFKL 980
            SCIDGRLTSAWNWCSQL TKP++P+FKL
Sbjct:  440 SCIDGRLTSAWNWCSQLPTKPFYPIFKL 467
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10610.1.1 vs. uniprot
Match: A0A7S0TIH1_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TIH1_HEMAN)

HSP 1 Score: 60.8 bits (146), Expect = 5.500e-7
Identity = 22/28 (78.57%), Postives = 27/28 (96.43%), Query Frame = 3 
Query:  897 SCIDGRLTSAWNWCSQLNTKPYFPVFKL 980
            SCIDGRLTSAWNWCSQ++ KP++P+FKL
Sbjct:  231 SCIDGRLTSAWNWCSQISAKPFYPIFKL 258
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10610.1.1 vs. uniprot
Match: A0A7R9UCK5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCK5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.840e-7
Identity = 23/28 (82.14%), Postives = 27/28 (96.43%), Query Frame = 3 
Query:  897 SCIDGRLTSAWNWCSQLNTKPYFPVFKL 980
            SCIDGRLTSAWNWCSQ+N+KPY P+F+L
Sbjct:  591 SCIDGRLTSAWNWCSQINSKPYVPIFRL 618
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10610.1.1 vs. uniprot
Match: A0A3M6VPL1_9STRA (B box-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPL1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.030e-7
Identity = 23/28 (82.14%), Postives = 27/28 (96.43%), Query Frame = 3 
Query:  897 SCIDGRLTSAWNWCSQLNTKPYFPVFKL 980
            SCIDGRLTSAWNWCS L+TKP+FP+FK+
Sbjct:  641 SCIDGRLTSAWNWCSNLHTKPFFPIFKI 668
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10610.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TSD6_9STRA9.790e-1053.23Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A482UVL1_9ARCH7.660e-882.14DUF2009 domain-containing protein n=1 Tax=archaeon... [more]
A0A367IST3_RHIAZ7.970e-881.48Uncharacterized protein (Fragment) n=1 Tax=Rhizopu... [more]
A0A7S0VDS6_9CRYP2.330e-778.57Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
D7FW41_ECTSI3.160e-785.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z3Z0_9STRA3.690e-785.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B5Y5N5_PHATC3.740e-785.71Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S0TIH1_HEMAN5.500e-778.57Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7R9UCK5_9STRA5.840e-782.14Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A3M6VPL1_9STRA6.030e-782.14B box-type domain-containing protein n=1 Tax=Peron... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10610contigD-mesarthrocarpus_Contig10610:2..981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FW41
PFAMsDUF2009,zf-B_box
Model size980
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.22e-10
EggNOG OGs28J77@1|root,2QRJJ@2759|Eukaryota
DescriptionProtein of unknown function (DUF2009)
Cds size207
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789197.226646-UTR-D-mesarthrocarpus_Contig10610:1..7741680789197.226646-UTR-D-mesarthrocarpus_Contig10610:1..774Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10610 2..774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789197.2376628-CDS-D-mesarthrocarpus_Contig10610:774..9811680789197.2376628-CDS-D-mesarthrocarpus_Contig10610:774..981Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10610 775..981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10610.1.1prot_D-mesarthrocarpus_Contig10610.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10610 775..981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10610.1.1

>prot_D-mesarthrocarpus_Contig10610.1.1 ID=prot_D-mesarthrocarpus_Contig10610.1.1|Name=mRNA_D-mesarthrocarpus_Contig10610.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=69bp
MTCNNGYRRIVPWGLFFSHPRLFAHSLPPSARLPPLPPCVRSCIDGRLTS
AWNWCSQLNTKPYFPVFKL
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10610:2..981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10610.1.1 ID=mRNA_D-mesarthrocarpus_Contig10610.1.1|Name=mRNA_D-mesarthrocarpus_Contig10610.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=980bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10610:2..981+ (Discosporangium mesarthrocarpum MT17_79)
CTTTACGGTTTGCAGTTGTTGTTATGTCTCGGTCTGATGCTGTCGAAGCC
CAGGTTAGAAAAACCAAAGACAGGAAAAAAAATCCTTGAAGAAACGTAAG
AACAACTCTGCTGCTTCACATCAACTGCAGCACTGTCCAGTACTGTATCT
GACTCTTCTTCACTGACTGCCGTCTTCTTCTTGTGGGTACCCTTGGTAGC
ACTCTAGGGCAGCACTCTAGGGCGGTGGAAGTCGGAAGGATGCGTGGCTT
CACTGCTGCGCCTTGTACGAGTTGTCAGGAGCATTTAAGAAAATGGAGAT
TGGTATTTGCAGCCTGCAGCGGGGGCACATTGCTGCGAGCTTTTATGCCC
CGAACTTTGAATGTTCTTCTGGTAGAGGGTTGCCTCTTTGTGGGGGTTAT
AGATATCATGGCAATTTACAGCCTGTAACCATGCAGATTTTCCCTCGTCC
TCCTACTCATGGGTTGGAATTTTATTTATTTTATTTATAATTTTTTTTGT
TCATGCCGTAGTGCTCCTGAGTATGGAGTGCATGGAGTCCAGAGTAGGAG
CTTTCGTGTCAATTGATACCCCAAACTGCAGTGTAATTGCTCTATGTAGG
AAAGCCCTACAGTGCGCCTTTCTTTCTCAGTAGTGCCTCTGAAACGACTC
ACCTGTCGCCACCACAGTACAGGAGTAGGGTTGGTACCTCTACTGTAGAG
CTCTTCTTCACGGTACACTGTGGTCTGTGGTAGTAGTACCAACCTTTGAG
GCTGGGCACCAAGTAGGAGAAAAATGACATGCAACAATGGTTACCGACGT
ATTGTCCCTTGGGGGCTTTTTTTTTCCCACCCCCGTCTCTTTGCCCATTC
CTTGCCCCCTTCCGCACGCCTGCCCCCCCTCCCCCCCTGTGTGCGCAGTT
GCATCGATGGCCGGCTCACATCAGCCTGGAATTGGTGCTCGCAACTCAAC
ACCAAGCCGTACTTCCCAGTCTTCAAGCTG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10610:2..981+

>mRNA_D-mesarthrocarpus_Contig10610.1.1 ID=mRNA_D-mesarthrocarpus_Contig10610.1.1|Name=mRNA_D-mesarthrocarpus_Contig10610.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=207bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10610:2..981+ (Discosporangium mesarthrocarpum MT17_79)
ATGACATGCAACAATGGTTACCGACGTATTGTCCCTTGGGGGCTTTTTTT
TTCCCACCCCCGTCTCTTTGCCCATTCCTTGCCCCCTTCCGCACGCCTGC
CCCCCCTCCCCCCCTGTGTGCGCAGTTGCATCGATGGCCGGCTCACATCA
GCCTGGAATTGGTGCTCGCAACTCAACACCAAGCCGTACTTCCCAGTCTT
CAAGCTG
back to top