mRNA_D-mesarthrocarpus_Contig10606.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10606.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10606.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10606.1.1 vs. uniprot
Match: D7G2L7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2L7_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.060e-45
Identity = 85/152 (55.92%), Postives = 99/152 (65.13%), Query Frame = 1
Query:    1 QARELSLFFPLKLKG--GCFREDIVVHLFSRITDLDNFYLVLDTLGQEGALSVANRLGWLNIFNPHFADRRYELDLRQNDHRRTCIVLADMAVNEPGPNLQNTTFSRHSDPARFALIPGWEVPSSWHALTSSEYATNVGVPDDGYLCLEYCS 450
            QAR L+  FP + KG  G  RED+VV LF R+TD+D F  VL TLG++  LS   RLGWLN  NPH  DR  +LDLR NDHRR   VL++MAV EPG NLQN  FSRH+D AR   IPGWEVP +W            GVPDDG+  +EYCS
Sbjct: 1085 QARVLAGVFPERAKGTTGNPREDLVVELFGRVTDIDKFCTVLATLGRDAQLSAGRRLGWLNALNPHDIDRPLDLDLRLNDHRRIARVLSEMAVVEPGSNLQNQRFSRHADAARHFFIPGWEVPQTWPGTQGGGGDGYGGVPDDGHFTVEYCS 1236          
BLAST of mRNA_D-mesarthrocarpus_Contig10606.1.1 vs. uniprot
Match: F0YFV2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFV2_AURAN)

HSP 1 Score: 95.9 bits (237), Expect = 3.970e-20
Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 1
Query:    1 QARELSLFFPLKLKGGCFREDIVVHLFSRITDLDNFYLVLDTLGQEGALSVANRLGWLNIFNPHFADRRYELDLRQNDHRRTCIVLADMAVNEPGPNLQNTTFSRHSDPARFALIPGWEVPSSW 372
            Q R+L   FP   +    R ++++ +F R+ DLDNFY V+D L +E    +  RLG++N++NP FADR Y+L L+  D R+  IVL  +A+ EPG N  +  F R          PGW++P+ W
Sbjct: 1399 QVRDLVARFPRNAQQ--LRVEVLMAVFGRVVDLDNFYTVVDELDEEEIDELVFRLGYMNVYNPVFADRMYKLCLKVPDERQMAIVLVRLAIVEPGENWVDEKFRRKES---LQWSPGWQLPAEW 1517          
BLAST of mRNA_D-mesarthrocarpus_Contig10606.1.1 vs. uniprot
Match: A0A8K1CIN9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIN9_PYTOL)

HSP 1 Score: 95.5 bits (236), Expect = 5.380e-20
Identity = 57/151 (37.75%), Postives = 75/151 (49.67%), Query Frame = 1
Query:    1 QARELSLFFPLKLKGGCFREDIVVHLFSRITDLDNFYLVLDTLGQEGALSVANRLGWLNIFNPHFADRRYELDLRQNDHRRTCIVLADMAVNEPGPNLQNTTFSR-HSDPARFALIPGWEVPSSWHALTSSEYATNVGVPDDGYLCLEYCS 450
            QA E+    P        R +    LFSR+ D+ NF+ ++D +  +     A  LGWLNIFNP   +R Y LDL   D R T  +L  +A+NEPG N  N TFS    +P     IPGW++P  W      +     GV   GYL +EY S
Sbjct: 1273 QAAEIVACMPTTFHA---RPETARLLFSRLIDVGNFHQIVDAMPPDDQYVCAKSLGWLNIFNPMVPERAYSLDLSIWDERETIKLLVALAINEPGENWINQTFSNVRGEPG----IPGWKLPVRWEKEDEKD---GGGVNRSGYLEMEYYS 1413          
BLAST of mRNA_D-mesarthrocarpus_Contig10606.1.1 vs. uniprot
Match: A0A7S3UTM1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTM1_HETAK)

HSP 1 Score: 89.4 bits (220), Expect = 1.590e-19
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  142 ALSVANRLGWLNIFNPHFADRRYELDLRQNDHRRTCIVLADMAVNEPGPNLQNTTFSRHSDPARFALIPGWEVPSSWHALTSSEYATNV--GVPDDGYLCLEYCS 450
            ++S+A+RLGWLNI N    DR Y+LDL   DH +   ++  +AV+E G NL    FSR +DP     IPGW++P+SW A       T +  GVP++G L  +Y S
Sbjct:    1 SISIAHRLGWLNILNLEHFDRHYDLDLTFKDHWKLANMVTRLAVDEDGDNLPLRQFSRKADP--LVWIPGWDLPASWDADNYQAKGTTIKPGVPNEGRLICQYWS 103          
BLAST of mRNA_D-mesarthrocarpus_Contig10606.1.1 vs. uniprot
Match: F0YFW1_AURAN (EF-hand domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFW1_AURAN)

HSP 1 Score: 91.3 bits (225), Expect = 1.690e-18
Identity = 59/138 (42.75%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   61 DIVVHLFSRITDLDNFY-LVLDTLGQ--EGALSVANRLGWLNIF---NPHFADRRYELDLRQNDHRRTCIVLADMAVNEPGPNLQNTTFSR-HS-DPARFALIPGWEVPSSWHALTSSEYATNV--GVPDDGYLCLEY 444
            D+VVHLFSR  D +NFY  VLD      +    V +RLGWLN+    NP  A   Y++DLR  DH +   VL  +A  EPG N ++ TF R H  DP     IPGW++P++W  +    Y  N+  G+P DG L L+Y
Sbjct: 1767 DLVVHLFSRCLDPENFYWAVLDPTFPIPQNRNEVIHRLGWLNVLDVRNPEIAG--YDIDLRYPDHWKVAHVLTQLAAVEPGLNFKHPTFRRLHGLDP-----IPGWDLPANWDVV---RYTGNLAKGIPTDGALTLDY 1894          
BLAST of mRNA_D-mesarthrocarpus_Contig10606.1.1 vs. uniprot
Match: A0A7S1XZJ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZJ5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.620e-17
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   55 REDIVVHLFSRITDLDNFYLVLDTLGQEGALSVANRLGWLNIFNPHFADRRYELDLRQNDHRRTCIVLADMAVNEPGPNL--QNTTFSRHSDPARFALIPGWEVPSSW 372
            R  ++++LFSRI DL+NF +++ TL  +    + +RLG LN+ NP   D  Y LDLR  + R  C +L  +AV EPG N   +   +S H +P     +PGWE+P SW
Sbjct:  651 RVQLIINLFSRIVDLENFDVIMTTLDDDEERELLHRLGGLNLKNPMKPDGFYFLDLRSREQRELCKMLVRLAVEEPGENWLGEEYQWSIHDEP-----VPGWELPLSW 753          
BLAST of mRNA_D-mesarthrocarpus_Contig10606.1.1 vs. uniprot
Match: A0A7S3DDT5_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DDT5_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 2.140e-15
Identity = 51/133 (38.35%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   55 REDIVVHLFSRITDLDNFYLVLDTLGQEGALS---VANRLGWLNIFNPHFADRRYELDLRQNDHRRTCIVLADMAVNEPGPNLQNTTFSRHSDPARFALIPGWEVPSSWHALTSSEYATNVGVPDDGYLCLEY 444
            R + +  LF RI DL+NFYL  D + ++ A++   V +RLGWLNI+NP +AD  YELDL   D R   I L  +A+ EPG N  + T++            G+E+P++W             VP  G L LEY
Sbjct:  239 RTETICLLFGRIIDLENFYL--DIVEKQEAMTKQAVLSRLGWLNIWNPLYADIYYELDLAIRDERLMAIALVKLAIREPGENWIDETYNGQ----------GFELPATW----------TQEVPFKGKLTLEY 349          
BLAST of mRNA_D-mesarthrocarpus_Contig10606.1.1 vs. uniprot
Match: A0A6H5JVF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.230e-12
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 QARELSLFFPLKLKG--GCFREDIVVHLFSRITDLDNFYLVLDTLGQEGALSVANRLGWLNIFNPHFADR 204
            QAR L+  FP + KG  G  RED+VV LF R+TD++NF  VL  LG++  LS   RLGWLN  NPH  DR
Sbjct:  649 QARVLAGVFPERAKGTTGNPREDLVVELFGRVTDIENFCTVLAMLGRDAQLSAGRRLGWLNALNPHEIDR 718          
BLAST of mRNA_D-mesarthrocarpus_Contig10606.1.1 vs. uniprot
Match: A0A482T4Q9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T4Q9_9ARCH)

HSP 1 Score: 71.6 bits (174), Expect = 9.350e-12
Identity = 49/168 (29.17%), Postives = 76/168 (45.24%), Query Frame = 1
Query:   13 LSLFFPLKLKG----GCFREDIVVHLFSRITDLDNFYLVLDTLGQEGALSVANRLGWLNIFNPHFADRRYELDLRQNDHRRTCIVLADMAVNEPGPNLQNTTF------SRHSDPAR--------------FALIPGWEVPSSWHALTSSEYATNVGVPDDGYLCLEY 444
            L  F P+ L      G +R ++VV +F RI DL NF L+L  L  E   ++  R+G LN+FNP   +     DL + + R+   +   M+V EPG N +          S + + +               FA IPGW++  +W         ++ G+P  G LC E+
Sbjct:   92 LECFAPIGLAHRSNIGSYRVELVVMVFDRILDLQNFELILMMLNAEEQAALYARIGVLNVFNPSKPEGARSFDLTRWEERQLVKMFVHMSVCEPGDNCKFLALIIYLMLSSYLETSHVFIGLNKQFIFDRGFAPIPGWDLSVTW--------LSDEGLPKKGLLCFEF 251          
BLAST of mRNA_D-mesarthrocarpus_Contig10606.1.1 vs. uniprot
Match: A0A482RZW2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZW2_9ARCH)

HSP 1 Score: 69.3 bits (168), Expect = 7.120e-11
Identity = 43/137 (31.39%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   46 GCFREDIVVHLFSRITDLDNFYLVLDTLGQEGALSVANRLGWLNIFNPHFADRRYELDLRQNDHRRTCIVLADMAVNEPGPNLQNTTF--SRHSDPARFALIPGWEVPSSWHALTSSEYATNVGVPDDGYLCLEYCS 450
            G FR ++++ LFSR+TDL NF  VL  L       +  RLGWLN++NP   +    LDL + + R+   +L  +   E G      ++  S  ++P      P W++P SW+A  +        +P  G L ++Y S
Sbjct:  810 GTFRVELIISLFSRLTDLINFEYVLQDLENVEIAMILFRLGWLNVWNPLKPEGYIVLDLSRQEERQIARMLITLNYVETGETWLEPSYAPSLTTNPED----PNWKLPISWYAEET--------LPSTGILSVQYFS 934          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10606.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G2L7_ECTSI1.060e-4555.92Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
F0YFV2_AURAN3.970e-2038.71Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8K1CIN9_PYTOL5.380e-2037.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3UTM1_HETAK1.590e-1942.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0YFW1_AURAN1.690e-1842.75EF-hand domain-containing protein n=1 Tax=Aureococ... [more]
A0A7S1XZJ5_9STRA4.620e-1740.74Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3DDT5_9EUKA2.140e-1538.35Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A6H5JVF0_9PHAE1.230e-1254.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482T4Q9_9ARCH9.350e-1229.17Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A482RZW2_9ARCH7.120e-1131.39Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10606contigD-mesarthrocarpus_Contig10606:50..1244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2L7
PFAMsLRR_6
Model size450
Max annot lvl2759|Eukaryota
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.73e-46
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size450
COG categoryS
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789196.929201-CDS-D-mesarthrocarpus_Contig10606:49..2521680789196.929201-CDS-D-mesarthrocarpus_Contig10606:49..252Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10606 50..252 +
1680789196.9405375-CDS-D-mesarthrocarpus_Contig10606:766..8741680789196.9405375-CDS-D-mesarthrocarpus_Contig10606:766..874Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10606 767..874 +
1680789196.962591-CDS-D-mesarthrocarpus_Contig10606:1105..12441680789196.962591-CDS-D-mesarthrocarpus_Contig10606:1105..1244Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10606 1106..1244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10606.1.1prot_D-mesarthrocarpus_Contig10606.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10606 50..1244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10606.1.1

>prot_D-mesarthrocarpus_Contig10606.1.1 ID=prot_D-mesarthrocarpus_Contig10606.1.1|Name=mRNA_D-mesarthrocarpus_Contig10606.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=150bp
QARELSLFFPLKLKGGCFREDIVVHLFSRITDLDNFYLVLDTLGQEGALS
VANRLGWLNIFNPHFADRRYELDLRQNDHRRTCIVLADMAVNEPGPNLQN
TTFSRHSDPARFALIPGWEVPSSWHALTSSEYATNVGVPDDGYLCLEYCS
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mRNA from alignment at D-mesarthrocarpus_Contig10606:50..1244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10606.1.1 ID=mRNA_D-mesarthrocarpus_Contig10606.1.1|Name=mRNA_D-mesarthrocarpus_Contig10606.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1195bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10606:50..1244+ (Discosporangium mesarthrocarpum MT17_79)
CAGGCACGAGAACTGTCACTTTTTTTCCCACTCAAGCTGAAAGGAGGATG TTTCAGGGAGGATATTGTGGTGCATCTGTTCAGTCGTATCACGGACCTGG ACAATTTCTACCTTGTTCTCGATACTCTGGGACAAGAAGGTGCCTTGTCC GTGGCCAACCGTCTCGGATGGTTAAATATATTCAACCCCCACTTCGCTGA CCGGTGAGCTGCACGCATTGTGAACAATACACTACAACGTGTACATCGAA CTATATTACGGGCTCTAATAGCCTTGCAATTAGGTAACATACATTGTACT TCAAGGAGTTCCCTTATGTCGTGTTCGAAGACCAGCCACATCGCATGAGA CAGCGAAGATCCACGGATGACCATTCGGTCTCCTACCCGAGCGAATATCC AAGGCTGAGACCATTGTACATCTTGGCTGTGTTCTTGTACCCATGCATGT TCTGCTGCCGTGTAGAGAAATACGAAGTCGACGTTCATTGCCCCAGGGTA GACATAACTGAACGTTGAGCCCCGCTCCTTCAGTGAAATTTTCCAGTAGT TGCTCAAACGATGTACTCGTTCTAGGTCCTGATACTGGGGTATCCAGTAC AGTAGCAGTTAAACTTCCAGGGGACATCCAGGTTGACTCAACCCTTGTTA GATCTGATCCATCCACTTCCACTCGTTCTGATACTGCTCCTCCGTTGGGG TTCACTACAAATCTCAGGCGGTACGAGCTAGATCTCAGGCAGAATGACCA CCGTCGAACGTGCATCGTGTTGGCAGACATGGCCGTCAACGAACCAGGGC CCAACCTTCAAAACACAACCTTCAGGTAAGAAACTCAGATTTGCTCACTC CTCCATGCCCCCTCTCTGCTTTCTCCCTATTTAACAACGTGCGAATGCAA CCCTTGACATAGTAAACAAACCAGTGCACACTTTGCCGCTATCCTTTGGC GGTCAGTAGTCTGGAAATCCACCCTCGACAAAACTTCCTCCGCAGTGCCA GATGTATATCATCTGCATTCACGGTGTCTCCCCCCCGTACACGTTCGCAC CGTCAGCCGCCACTCGGATCCAGCCAGGTTCGCTCTCATCCCAGGCTGGG AGGTTCCGTCCTCTTGGCATGCCCTGACCTCCTCTGAGTATGCCACCAAT GTCGGGGTACCAGATGACGGTTACCTGTGCCTGGAATATTGCTCA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10606:50..1244+

>mRNA_D-mesarthrocarpus_Contig10606.1.1 ID=mRNA_D-mesarthrocarpus_Contig10606.1.1|Name=mRNA_D-mesarthrocarpus_Contig10606.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=450bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10606:50..1244+ (Discosporangium mesarthrocarpum MT17_79)
CAGGCACGAGAACTGTCACTTTTTTTCCCACTCAAGCTGAAAGGAGGATG
TTTCAGGGAGGATATTGTGGTGCATCTGTTCAGTCGTATCACGGACCTGG
ACAATTTCTACCTTGTTCTCGATACTCTGGGACAAGAAGGTGCCTTGTCC
GTGGCCAACCGTCTCGGATGGTTAAATATATTCAACCCCCACTTCGCTGA
CCGGCGGTACGAGCTAGATCTCAGGCAGAATGACCACCGTCGAACGTGCA
TCGTGTTGGCAGACATGGCCGTCAACGAACCAGGGCCCAACCTTCAAAAC
ACAACCTTCAGCCGCCACTCGGATCCAGCCAGGTTCGCTCTCATCCCAGG
CTGGGAGGTTCCGTCCTCTTGGCATGCCCTGACCTCCTCTGAGTATGCCA
CCAATGTCGGGGTACCAGATGACGGTTACCTGTGCCTGGAATATTGCTCA
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