mRNA_D-mesarthrocarpus_Contig10600.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10600.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10600.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10600.1.1 vs. uniprot
Match: D7FHI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHI5_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.700e-38
Identity = 73/126 (57.94%), Postives = 87/126 (69.05%), Query Frame = 1
Query:   10 GSKRYALSKRAQVALTEKWALLSGKGGGAARVTFNSMHPGWCDTPGLASYMADFHNQRKPSLRSSDEGADTIIWLAVSPKVAGQTGKFWFDRKAQRTHMPYSGTSSGWAEAREALWRATADLTERR 387
            G+  YAL+KRAQV LTE+WA +   GG    V+FNSMHPGWCDTPGLAS M DF  +++ SLRSS+EG+DTI+WLA S    G+TGKFWFDRKA RTHMP +GT     E  + LW A       R
Sbjct:  233 GTVVYALAKRAQVTLTERWAAMHKDGG----VSFNSMHPGWCDTPGLASGMPDFRERQQGSLRSSEEGSDTIVWLACSRAAFGETGKFWFDRKATRTHMPLAGTRMSQKEEGD-LWEAVERACSER 353          
BLAST of mRNA_D-mesarthrocarpus_Contig10600.1.1 vs. uniprot
Match: A0A7W1RUE8_9ACTN (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1RUE8_9ACTN)

HSP 1 Score: 110 bits (276), Expect = 2.600e-25
Identity = 59/128 (46.09%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   10 GSKRYALSKRAQVALTEKWALLSGKGGGAARVTFNSMHPGWCDTPGLASYMADFHNQRKPSLRSSDEGADTIIWLAVSPKVAGQTGKFWFDRKAQRTHMPYSGTSSGWAEAREALWRATADLTERRRG 393
            G K Y+ +KRAQVAL E+W   +G+  G   VT N+MHPGW DTPGL S +  F     P LRS ++GADTI WLA +P+VAG++G F+ DR+A+ TH   S      A+ R  LW    + T+   G
Sbjct:  195 GVKAYSRTKRAQVALAEEW---TGRLAGT-NVTVNTMHPGWADTPGLRSGLPGFSRALAPVLRSPEQGADTIAWLAAAPEVAGRSGLFFLDRRARPTHRRRSTRRLDEAQERARLWELCQNATDSFSG 318          
BLAST of mRNA_D-mesarthrocarpus_Contig10600.1.1 vs. uniprot
Match: UPI000E6FBBCD (dehydrogenase/reductase SDR family member 12-like isoform X4 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FBBCD)

HSP 1 Score: 109 bits (272), Expect = 2.810e-25
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   10 GSKRYALSKRAQVALTEKWALLSGKGGGAARVTFNSMHPGWCDTPGLASYMADFHNQRKPSLRSSDEGADTIIWLAVSPKVAGQTGKFWFDRKAQRTHMPYSGTS 324
            G  +YA +KR QVALTEKWA L    G    + F SMHPGW +TPG+A  + DF  +    LR+S+EGADTI+WLA+ PK    +G F+FDR     H+P++GTS
Sbjct:  137 GVLQYARNKRVQVALTEKWAELHKNKG----IGFYSMHPGWAETPGVAQSLPDFSERMSGKLRTSEEGADTIVWLALQPKEKLVSGSFYFDRAEAPKHLPFAGTS 237          
BLAST of mRNA_D-mesarthrocarpus_Contig10600.1.1 vs. uniprot
Match: A0A843VXF6_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VXF6_COLES)

HSP 1 Score: 110 bits (274), Expect = 4.550e-25
Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   10 GSKRYALSKRAQVALTEKWALLSGKGGGAARVTFNSMHPGWCDTPGLASYMADFHNQRKPSLRSSDEGADTIIWLAVSPKVAGQTGKFWFDRKAQRTHMPYSGTS 324
            G+++YA +KRAQVALTEKWA   G  G    + F SMHPGW DTPG++  + DFH +     R+S+EGADT++WLA+ PK     G F+FDR     H+ +SGT+
Sbjct:  193 GTQQYAKNKRAQVALTEKWAETHGGEG----IGFYSMHPGWADTPGVSKSLPDFHERYSGRFRTSEEGADTVVWLALQPKEKLVPGAFYFDRAVAPKHLLFSGTA 293          
BLAST of mRNA_D-mesarthrocarpus_Contig10600.1.1 vs. uniprot
Match: A0A3N5JRL2_9GAMM (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5JRL2_9GAMM)

HSP 1 Score: 112 bits (280), Expect = 8.600e-25
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   10 GSKRYALSKRAQVALTEKWALLSGKGGGAARVTFNSMHPGWCDTPGLASYMADFHNQRKPSLRSSDEGADTIIWLAVSPKVAGQTGKFWFDRKAQRTHMPYSGTSSGWAEAREALWRATADLTER 384
            GS+ YA +KRA V LTE WA      G    V  ++MHPGW DTPG+A  +  FH   +P LR++DEGADTI WLA + + A  TG FW DR+   TH+ + GT     + R+ALW A A LT +
Sbjct:  463 GSRAYARAKRALVTLTEMWAEQLQNSG----VVVHAMHPGWADTPGVAGSLPGFHTLTRPFLRTADEGADTITWLAAAEEAAKVTGLFWLDREPHTTHV-FPGTHPS-PQERQALWDALARLTSK 581          
BLAST of mRNA_D-mesarthrocarpus_Contig10600.1.1 vs. uniprot
Match: A0A1D1XQE1_9ARAE (Dehydrogenase/reductase SDR family member 12 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XQE1_9ARAE)

HSP 1 Score: 109 bits (273), Expect = 1.280e-24
Identity = 53/109 (48.62%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   10 GSKRYALSKRAQVALTEKWALLSGKGGGAARVTFNSMHPGWCDTPGLASYMADFHNQRKPSLRSSDEGADTIIWLAVSPKVAGQTGKFWFDRKAQRTHMPYSGTSSGWA 336
            G+ +YA +KR QVALTEKW  + G  G    + F SMHPGW DTPG+A  +  FH      LR+ +EGADTI+WLA+ PK    +G F+FDR     H+P SGT+   A
Sbjct:  240 GAHQYAQNKRVQVALTEKWGEIHGSEG----IGFYSMHPGWADTPGVAKGLPSFHKSLSERLRTREEGADTIVWLALQPKEKLVSGAFYFDRAEAPKHLPLSGTAGSHA 344          
BLAST of mRNA_D-mesarthrocarpus_Contig10600.1.1 vs. uniprot
Match: A0A835UKQ1_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UKQ1_VANPL)

HSP 1 Score: 110 bits (274), Expect = 1.950e-24
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   10 GSKRYALSKRAQVALTEKWALLSGKGGGAARVTFNSMHPGWCDTPGLASYMADFHNQRKPSLRSSDEGADTIIWLAVSPKVAGQTGKFWFDRKAQRTHMPYSGTS 324
            G K+YA +KR QVALTEKWA +    G    V F SMHPGW +TPG+A  +  FH +    LRSS+EGADTI+WLA+ PK    +G F+FDR     H+P++GT+
Sbjct:  239 GVKQYARNKRLQVALTEKWAQIYHDKG----VGFYSMHPGWAETPGVAKSLPSFHEKFSGKLRSSEEGADTIVWLALQPKEKLVSGAFYFDRFEAPKHLPFAGTA 339          
BLAST of mRNA_D-mesarthrocarpus_Contig10600.1.1 vs. uniprot
Match: A0A7S2UXC8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXC8_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.050e-24
Identity = 56/105 (53.33%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   10 GSKRYALSKRAQVALTEKWAL-LSGKGGGAARVTFNSMHPGWCDTPGLASYMADFHNQRKPSLRSSDEGADTIIWLAVSPKVAGQTGKFWFDRKAQRTHMPYSGT 321
            G   YAL+KR QV LTE  A    GK      VT NSMHPGW DTPGLA+ M  F++  K +LRS + GADTI+WLA SP V  ++G FWFDRKA+ T+  ++ T
Sbjct:  189 GVLMYALAKRVQVILTEMMAEDYKGKS-----VTINSMHPGWVDTPGLATQMPSFYSSHKGTLRSMEAGADTIVWLATSPGVKDKSGMFWFDRKARATNFRFART 288          
BLAST of mRNA_D-mesarthrocarpus_Contig10600.1.1 vs. uniprot
Match: A0A200QCF5_9MAGN (Short-chain dehydrogenase/reductase SDR n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QCF5_9MAGN)

HSP 1 Score: 108 bits (269), Expect = 2.570e-24
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = 1
Query:   10 GSKRYALSKRAQVALTEKWALLSGKGGGAARVTFNSMHPGWCDTPGLASYMADFHNQRKPSLRSSDEGADTIIWLAVSPKVAGQTGKFWFDRKAQRTHMPYSGTSSGWA 336
            G+ +YA +KR QVALTEKW  L    G    + F SMHPGW +TPG+A  + +F  +    LR+S+EGADT++WLA+ PK    +G F+FDR     H+P++GTSS  A
Sbjct:  201 GTLQYARNKRVQVALTEKWTELYSNRG----IGFYSMHPGWVETPGVAKSLPEFSERLSGKLRTSEEGADTVVWLALQPKEKLVSGAFYFDRAEAPKHLPFAGTSSSHA 305          
BLAST of mRNA_D-mesarthrocarpus_Contig10600.1.1 vs. uniprot
Match: A0A804KYK2_MUSAM (Uncharacterized protein n=2 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804KYK2_MUSAM)

HSP 1 Score: 107 bits (266), Expect = 3.650e-24
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 1
Query:   10 GSKRYALSKRAQVALTEKWA-LLSGKGGGAARVTFNSMHPGWCDTPGLASYMADFHNQRKPSLRSSDEGADTIIWLAVSPKVAGQTGKFWFDRKAQRTHMPYSGTS 324
            G+ +YA +KR QVALTEKWA   SGKG     + F SMHPGW DTPG+A  +  F  +    LR+ DEGADT+IWLA+ PK   ++G F+FDR     H+ ++GT+
Sbjct:  165 GTLQYARNKRVQVALTEKWAETYSGKG-----IDFYSMHPGWADTPGVAQSLPGFSERLSGKLRTKDEGADTVIWLALQPKEKLKSGAFYFDRAEAPKHLLFAGTA 265          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10600.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHI5_ECTSI1.700e-3857.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7W1RUE8_9ACTN2.600e-2546.09SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
UPI000E6FBBCD2.810e-2550.48dehydrogenase/reductase SDR family member 12-like ... [more]
A0A843VXF6_COLES4.550e-2549.52Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
A0A3N5JRL2_9GAMM8.600e-2547.20SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A1D1XQE1_9ARAE1.280e-2448.62Dehydrogenase/reductase SDR family member 12 (Frag... [more]
A0A835UKQ1_VANPL1.950e-2451.43Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A7S2UXC8_9STRA2.050e-2453.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A200QCF5_9MAGN2.570e-2447.71Short-chain dehydrogenase/reductase SDR n=1 Tax=Ma... [more]
A0A804KYK2_MUSAM3.650e-2450.00Uncharacterized protein n=2 Tax=Musa acuminata sub... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10600contigD-mesarthrocarpus_Contig10600:95..1919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHI5
Preferred nameDHRS12
PFAMsadh_short
Model size723
Max annot lvl2759|Eukaryota
KEGG koko:K11168
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.38e-29
EggNOG OGsCOG1028@1|root,KOG1208@2759|Eukaryota
Descriptionoxidation-reduction process
Cds size279
COG categoryIQ
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789196.7313979-UTR-D-mesarthrocarpus_Contig10600:94..1731680789196.7313979-UTR-D-mesarthrocarpus_Contig10600:94..173Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10600 95..173 +
1680789196.7466538-UTR-D-mesarthrocarpus_Contig10600:248..2861680789196.7466538-UTR-D-mesarthrocarpus_Contig10600:248..286Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10600 249..286 +
1680789196.7843568-UTR-D-mesarthrocarpus_Contig10600:1592..19191680789196.7843568-UTR-D-mesarthrocarpus_Contig10600:1592..1919Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10600 1593..1919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789196.757573-CDS-D-mesarthrocarpus_Contig10600:286..4031680789196.757573-CDS-D-mesarthrocarpus_Contig10600:286..403Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10600 287..403 +
1680789196.7729154-CDS-D-mesarthrocarpus_Contig10600:1430..15921680789196.7729154-CDS-D-mesarthrocarpus_Contig10600:1430..1592Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10600 1431..1592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10600.1.1prot_D-mesarthrocarpus_Contig10600.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10600 287..1592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10600.1.1

>prot_D-mesarthrocarpus_Contig10600.1.1 ID=prot_D-mesarthrocarpus_Contig10600.1.1|Name=mRNA_D-mesarthrocarpus_Contig10600.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=93bp
MHPGWCDTPGLASYMADFHNQRKPSLRSSDEGADTIIWLAVSPKVAGQTG
KFWFDRKAQRTHMPYSGTSSGWAEAREALWRATADLTERRRG*
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mRNA from alignment at D-mesarthrocarpus_Contig10600:95..1919+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10600.1.1 ID=mRNA_D-mesarthrocarpus_Contig10600.1.1|Name=mRNA_D-mesarthrocarpus_Contig10600.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1825bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10600:95..1919+ (Discosporangium mesarthrocarpum MT17_79)
CCCCCCCCCGGGTCAAAAAGATACGCCCTGTCAAAGAGGGCCCAGGTAGC CCTGACTGAGAAGTGGGCCCTCTTGTCGGGTGAGGCTGGCTCCGGGGTTG GGGCCACAGCTGAGGGTAAGGGAGAGCGAGAGGGAAAGGGGAAGGTCAGG GGAGGGAAGGGAGGGGGGGCGGCGAGGGTGACCTTCAACTCCATGCACCC GGGGTGGTGTGACACACCGGGCCTGGCCTCATACATGGCGGATTTCCACA ACCAAAGGAAGCCGTCCCTCAGGTCGAGCGACGAGGGTGCAGACACTATC ATCTGGTTGGTGAGAGGAGAGGAGGCGATGTCCCCCTAAGGGTTAGGGTG GGGGGTAGGGTTGGGGTTAGGGTAAGGGTTTGGGGTTGAGGGCGTGCAGG CTCAGGGCTAGAGACGGGGGGTGGTGATGGGGGCTGGGGTTGGGTAGATA GGGTGGGTCTCTCTTGGCTCAGGGTTAGGGTTCCCCTTGCGATTCATTAT TCCTTTTTCTTTTTTTTTGCACCACGGAGTGCTCTGCCAGCGTGTCTCAC TCCCAACCCTAACCCTAACCCTAACCCTAACCCCAACCCTAACCCCAAGT ACGCCACGATGCCTGTACTGCTGCAGTGGTTCATGCACTGTTGCAGGCGC ATAGAGGTACTACAGCAGCGGGTACCCTACTGCATTGCGCCTGGTGGACC ACGGTACTTCAACGCACATAAAACACTGACTACGGAATTCGGGCCATATG CATAGGTTTAGGGTTAGGGTTAGGTTTAGATGGCAGCCTCAGAAAAATGC AATCGGGCAGAGGGGGGGGGGTGGAATCCGGGGCTCTTTCCCCCCTCGGT AGCGTAGCGGGATCAAACTCTACCTCTGACAGCGTCTTTTTTTGTTGTGC CTAGGTTATTTTTCAATCTCTCGGGAATACCCTGGACTTAAGGTTGGGGT AGGGGTTAGGCGTTTTCTTTTTTTTTTCTTTGGAGTACCCTGGAGTGGAG CGGAGCTCAAGTGCTCTCGATGAACCCACAACAGCAATGCCACTAGATGA CGCCATGGTTGAGCTCTACAGTCCAGGCATGGAGTTGTTGATCCCCCAAG GTTTATGGTTTTGTCTGCAGGGTTAGGGTCGAATGTAATGTAGTACGGCA ACGTAGTGTTTGCCTGGAAACACACAAACACACGAACACTTAACATTGTG TTAACACACACACTGACTGAACCTGCCATTGTTTAATTTAGGCTTCTTCG CCTGTCTCCTCTGTGCCTTGCTCACTTTGGAGTATATGTTGCTCTTCCCT CCCCTTCTGTCCCGCCTCTGTCGCACTTGCGCATAGGCTGTCTCCCCAAA GGTTGCGGGGCAGACGGGGAAATTCTGGTTCGACCGGAAGGCTCAGCGGA CCCACATGCCATATTCCGGGACTTCCTCCGGGTGGGCTGAGGCCCGAGAG GCATTGTGGAGGGCCACAGCTGATCTCACCGAGAGGAGGAGAGGTTGAGG ATGAAACGAGGACGAGAGGGGCCTGATTGTTTGTTCCCCTGCCGCTTTTG CTGTGTTGCGGTACTTGAAGTGTTCTTGCACGTGCTAGTTATTATATTCG AGGTTTGACGTATGTAAAAACTTGGGTACTACTTCTCTACCGTATGTGTG AAACAAGCAGACATGTGTGTGGGAGGCTGTTGCTCGATCGATTGATTGCG GTTGACGGTTGAGGAAGGTCGACCACTTTTTATTTTTGTGTACCTCACGT TGATCATTTTTTTTATGCAAGAAGGGGGCTGATCCTTTTCCCTGATATGG TGGGAGAAAGGCGGCATGGGTAAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10600:95..1919+

>mRNA_D-mesarthrocarpus_Contig10600.1.1 ID=mRNA_D-mesarthrocarpus_Contig10600.1.1|Name=mRNA_D-mesarthrocarpus_Contig10600.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=279bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10600:95..1919+ (Discosporangium mesarthrocarpum MT17_79)
ATGCACCCGGGGTGGTGTGACACACCGGGCCTGGCCTCATACATGGCGGA
TTTCCACAACCAAAGGAAGCCGTCCCTCAGGTCGAGCGACGAGGGTGCAG
ACACTATCATCTGGTTGGCTGTCTCCCCAAAGGTTGCGGGGCAGACGGGG
AAATTCTGGTTCGACCGGAAGGCTCAGCGGACCCACATGCCATATTCCGG
GACTTCCTCCGGGTGGGCTGAGGCCCGAGAGGCATTGTGGAGGGCCACAG
CTGATCTCACCGAGAGGAGGAGAGGTTGA
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