mRNA_D-mesarthrocarpus_Contig1060.6.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1060.6.1
Unique NamemRNA_D-mesarthrocarpus_Contig1060.6.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1060.6.1 vs. uniprot
Match: D7G729_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G729_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 7.960e-8
Identity = 60/184 (32.61%), Postives = 83/184 (45.11%), Query Frame = 3 
Query:    6 LLALLVEKTSAFISSSNTLVGRCSAACELSNWRENRAAGLWEFN*SQIALPRPQTHLLDDSCWRSSFAQARCFPRAERLPFSKHLARPALHMTVTLADDPSGLQDQAISVLSFASSVLLLGIICGAVYLTLNQWKYQRETNKEEDFAASTGTLPVKDAP--LKPADEKSEEGNRYFRRMNKSKK 551
            +L LL+    AF+   N L+GR +A      W             S+IA     T     +  +   + +   P    +  ++  A+ A  M ++        Q+  I      SSVLLL II GAVYL+L +WK ++E  KE D   S G LP   AP  L P D + EEGNR  RRM K +K
Sbjct:    6 ILLLLLSAAQAFVGGPNVLIGRGNAVYT-KGWG------------SRIAR---HTSAARQATSQRGLSASMAPPSMSLMLLAEDAAKAAPDMPISPEQ-----QESIIXXXXXMSSVLLLIIISGAVYLSLEEWKNKKEL-KETDKYTSAGQLPPDIAPEALPPGDGE-EEGNRLQRRMAKKEK 166
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1060.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G729_ECTSI7.960e-832.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1060contigD-mesarthrocarpus_Contig1060:11422..12631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size764
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011250.1
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789196.4411058-UTR-D-mesarthrocarpus_Contig1060:11421..116991680789196.4411058-UTR-D-mesarthrocarpus_Contig1060:11421..11699Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1060 11422..11699 +
1680789196.4820344-UTR-D-mesarthrocarpus_Contig1060:12421..126311680789196.4820344-UTR-D-mesarthrocarpus_Contig1060:12421..12631Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1060 12422..12631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789196.4514654-CDS-D-mesarthrocarpus_Contig1060:11699..118051680789196.4514654-CDS-D-mesarthrocarpus_Contig1060:11699..11805Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1060 11700..11805 +
1680789196.4679646-CDS-D-mesarthrocarpus_Contig1060:12251..124211680789196.4679646-CDS-D-mesarthrocarpus_Contig1060:12251..12421Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1060 12252..12421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1060.6.1prot_D-mesarthrocarpus_Contig1060.6.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1060 11700..12421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1060.6.1

>prot_D-mesarthrocarpus_Contig1060.6.1 ID=prot_D-mesarthrocarpus_Contig1060.6.1|Name=mRNA_D-mesarthrocarpus_Contig1060.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=92bp
MTVTLADDPSGLQDQAISVLSFASSVLLLGIICGAVYLTLNQWKYQRETN
KEEDFAASTGTLPVKDAPLKPADEKSEEGNRYFRRMNKSKK*
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mRNA from alignment at D-mesarthrocarpus_Contig1060:11422..12631+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1060.6.1 ID=mRNA_D-mesarthrocarpus_Contig1060.6.1|Name=mRNA_D-mesarthrocarpus_Contig1060.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1210bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1060:11422..12631+ (Discosporangium mesarthrocarpum MT17_79)
CCATCCTCCTCGCCTTGCTGGTGGAAAAGACATCGGCCTTTATCTCCTCG
TCTAATACACTGGTCGGACGTTGCAGCGCTGCATGTGAGTTGAGTAACTG
GAGGGAGAACAGAGCGGCCGGCCTGTGGGAGTTCAACTGAAGCCAAATAG
CCCTTCCCCGACCTCAAACCCACCTCTTAGATGATTCGTGCTGGAGATCT
TCGTTCGCCCAGGCGCGTTGCTTTCCACGGGCGGAGAGGCTACCTTTCTC
CAAGCACCTCGCTCGCCCAGCACTCCACATGACCGTAACCTTGGCCGATG
ACCCGAGCGGTCTTCAGGATCAAGCAATCTCGGTCCTCAGCTTTGCTTCA
TCGGTCCTTCTTCTTGGCATCATTTGTGGAGCGGGTATGTCTAACAATAC
CTCATACAAGGGTCGACCCTCTGTTAGAACTTATTTTCGATGTACCTTTC
TCACCCCTTCGTCGTCTGCTTGGCCTTATTGCACTGTTGACCCTCAATAC
AACGATATTGTTTCTCTGCAACAGGATGTTGGAATCTGGGTATCACATGT
AGAATCTCCAGGTCCTTTGTGACTGAAGTATCGTACACCAGGACACATAC
CGCAGAATAACCAGCAAAAAATGTCAACGGATGAAAAGATTGTGCTCAAT
GACATAGAAATAGGGAATTAGCTATGTTGGTTTGTTGAAGAGCACGTGTT
TCAGACTAGTTACACGGCGGGGAATCTACAACCCTCTCCTCGCATGCCGG
AGTCGCGCCATGACCTGATCTGAACGGTGCCTTCATTCCCCAACTCTTCC
ATACTGTGCATGCCCACTCGCTGCTGATAGTATACCTTACGCTGAATCAA
TGGAAGTACCAGAGGGAAACAAACAAGGAAGAAGACTTCGCTGCCAGCAC
TGGAACACTGCCAGTCAAGGATGCCCCCCTGAAGCCTGCTGACGAGAAGA
GCGAGGAAGGCAACCGGTATTTCCGACGGATGAACAAGTCCAAAAAGTGA
ACTGCATGATTTGGGGGAGAGAGGCAGGGATATTTTATCTATGTTCCTTA
CTTCAAGAATACTAAAGTGGTCTTGGAGAGAGAAAGATAGGACTGGCGGC
TCAACGAAATGCAACCTAATTCATATATTGATGTTCTGTGCGTGCTTGTC
TTCTTTAATTTGTCTGGCATGTTCCATACAACAGATATAATAGACAAAAG
ACAAAGTTTA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1060:11422..12631+

>mRNA_D-mesarthrocarpus_Contig1060.6.1 ID=mRNA_D-mesarthrocarpus_Contig1060.6.1|Name=mRNA_D-mesarthrocarpus_Contig1060.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=276bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1060:11422..12631+ (Discosporangium mesarthrocarpum MT17_79)
ATGACCGTAACCTTGGCCGATGACCCGAGCGGTCTTCAGGATCAAGCAAT
CTCGGTCCTCAGCTTTGCTTCATCGGTCCTTCTTCTTGGCATCATTTGTG
GAGCGGTATACCTTACGCTGAATCAATGGAAGTACCAGAGGGAAACAAAC
AAGGAAGAAGACTTCGCTGCCAGCACTGGAACACTGCCAGTCAAGGATGC
CCCCCTGAAGCCTGCTGACGAGAAGAGCGAGGAAGGCAACCGGTATTTCC
GACGGATGAACAAGTCCAAAAAGTGA
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