mRNA_D-mesarthrocarpus_Contig1060.13.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1060.13.1
Unique NamemRNA_D-mesarthrocarpus_Contig1060.13.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1060.13.1 vs. uniprot
Match: A0A2E3MT09_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E3MT09_9PLAN)

HSP 1 Score: 53.5 bits (127), Expect = 4.030e-6
Identity = 38/92 (41.30%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:  223 DSPLLWSHSEDDVAGEFAALDWLQRNSPRSGQGMRVLQACGGGDTAVALLGRDDVASVHCVDACPAQLHLAQLKLTLALSDMPQDEVLAFLG 498
            D PL ++   +D   +    +W+  + P   +G RVL    GG TA  L  R +VA +H VDA PAQL LAQLKL L    +P  + LA LG
Sbjct:   14 DLPLAFAQVREDALQD----NWVVDSLP---EGARVLMIASGGCTAALLATRPNVAQLHLVDANPAQLALAQLKLRLLA--LPVQQRLAILG 96
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1060.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E3MT09_9PLAN4.030e-641.30Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1060contigD-mesarthrocarpus_Contig1060:21957..23497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size561
Hectar predicted targeting categoryother localisation
Exons3
Cds size558
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789196.2354045-CDS-D-mesarthrocarpus_Contig1060:21956..222921680789196.2354045-CDS-D-mesarthrocarpus_Contig1060:21956..22292Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1060 21957..22292 +
1680789196.2584896-CDS-D-mesarthrocarpus_Contig1060:22585..226181680789196.2584896-CDS-D-mesarthrocarpus_Contig1060:22585..22618Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1060 22586..22618 +
1680789196.2736633-CDS-D-mesarthrocarpus_Contig1060:23306..234951680789196.2736633-CDS-D-mesarthrocarpus_Contig1060:23306..23495Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1060 23307..23495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1060.13.1prot_D-mesarthrocarpus_Contig1060.13.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1060 21957..23495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1060.13.1

>prot_D-mesarthrocarpus_Contig1060.13.1 ID=prot_D-mesarthrocarpus_Contig1060.13.1|Name=mRNA_D-mesarthrocarpus_Contig1060.13.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=186bp
PIPFPQGQLKTIRTTSTFHPRKSDHLTVKNNMLMNLVGRQTLRQPLRCFG
SSAIPRGNTDWLQLLSLRQCLTDFDSPLLWSHSEDDVAGEFAALDWLQRN
SPRSGQGMRVLQACGGGDTAVALLGRDDVASVHCVDACPAQLHLAQLKLT
LALSDMPQDEVLAFLGMNRPGWDRGMVASPPGGGSR
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mRNA from alignment at D-mesarthrocarpus_Contig1060:21957..23497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1060.13.1 ID=mRNA_D-mesarthrocarpus_Contig1060.13.1|Name=mRNA_D-mesarthrocarpus_Contig1060.13.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1541bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1060:21957..23497+ (Discosporangium mesarthrocarpum MT17_79)
CCCATTCCTTTTCCTCAAGGCCAGCTTAAGACCATCAGAACGACAAGCAC
TTTTCATCCTCGTAAATCGGACCATCTCACTGTAAAAAATAATATGCTGA
TGAATCTCGTTGGGAGGCAGACGCTGAGGCAACCCTTGCGGTGCTTCGGC
AGCTCAGCGATCCCGCGAGGGAACACCGACTGGCTGCAGCTGCTCTCCCT
TCGACAGTGCCTCACTGACTTCGATAGTCCCTTGCTTTGGTCTCACAGTG
AGGATGATGTCGCTGGAGAGTTCGCGGCGCTTGACTGGCTGCAAAGAAAC
AGCCCAAGAAGTGGGCAAGGCATGAGAGTATTGCAGGCAAGTCGCACCAA
ACTAACCAAAACAAGTTGTGGGGCCAAGAGAACATGAGACAAGGAGTGAG
CAGGTTTATTTCGAAGAAGATGAAATGTCCTACATACTGTTTGTAACACA
GTCAGACCAAGAGCTTCATTTGGGTGCTGCATGTCACGCATCGGAAGACA
TTGTGCTGTTCCAGCGACAGTGTCGGGTACTCTGTGGCTTACATCTGTCC
TTCCTTCCTGCCATGGCTTGATTCATCAACGTGGCTCTGCCTGCTTCCCC
ATGACTCCCTAATCTTCGTCTGGATGTAGGCTTGCGGTGGAGGGGACACT
GCAGTTGCACTGGTGAGATTGCGGCCACTGTGATTCCCGTGCTGATTGTG
CGCCTCGTGGTTCAGTGCTATGGGTTACGTCACAGTGCGGTTTGCACGTC
CTCCATTAAAACCTCCGGTAGCTTTTTGCATGGAAAAATCAGAACCCGTG
TTCTTATGTTGTACTAAACGTTTTTTGAACATGATACCGTAACTCTTTCC
TGCTGCAATATTGGGGTTTGAAGTCTCCAGCCAAGCACATCAAGTGCAAA
ATCAATTTGTTTTTTGTTGCTCTGTTGGTCCATGTGCCTCTTAGCAAACC
TCAGGTGCCATCTGTGAGACATGCCCAAACGTCTTCTGACCATATCCTGT
GGGAAATTAGGGCCACATTCATTCGCTCTATTTTTGTTCTTTCTTACTGC
AGGAGCACACCGTTGCGCCGAAGACAACCACTGAAATGGGGCATGCCCTG
TTGTGTCTGATGTTGGGGAAAGAACCCCTGTCAAACTGCGGCAAAAAGGT
TGTAGTGTCGCAGAGCCAGTCCAAAGGTCGTAAGGTCTCGAGTCAGAACA
CTCAACCACGATCTCATCCCGTCCCCCCTACCCCGGAAACCTTTCCCCTT
CCGTGCATCGCACCTGCCCCACGTATTGTTTATTGTTTTTATCTTCTATA
CGATGCGCACATGTCACAACTCATGGTGGCCGGATGGGGTATGATCAAAG
CTCGGCCGGGATGATGTGGCCTCAGTTCATTGCGTGGACGCATGCCCCGC
CCAGCTGCATCTGGCGCAGCTGAAGCTGACCTTGGCCCTGAGTGACATGC
CCCAGGATGAGGTGCTGGCATTCCTTGGCATGAACAGGCCAGGGTGGGAC
AGGGGCATGGTGGCCTCTCCCCCGGGGGGGGGCAGCAGGCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1060:21957..23497+

>mRNA_D-mesarthrocarpus_Contig1060.13.1 ID=mRNA_D-mesarthrocarpus_Contig1060.13.1|Name=mRNA_D-mesarthrocarpus_Contig1060.13.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=558bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1060:21957..23497+ (Discosporangium mesarthrocarpum MT17_79)
CCCATTCCTTTTCCTCAAGGCCAGCTTAAGACCATCAGAACGACAAGCAC
TTTTCATCCTCGTAAATCGGACCATCTCACTGTAAAAAATAATATGCTGA
TGAATCTCGTTGGGAGGCAGACGCTGAGGCAACCCTTGCGGTGCTTCGGC
AGCTCAGCGATCCCGCGAGGGAACACCGACTGGCTGCAGCTGCTCTCCCT
TCGACAGTGCCTCACTGACTTCGATAGTCCCTTGCTTTGGTCTCACAGTG
AGGATGATGTCGCTGGAGAGTTCGCGGCGCTTGACTGGCTGCAAAGAAAC
AGCCCAAGAAGTGGGCAAGGCATGAGAGTATTGCAGGCTTGCGGTGGAGG
GGACACTGCAGTTGCACTGCTCGGCCGGGATGATGTGGCCTCAGTTCATT
GCGTGGACGCATGCCCCGCCCAGCTGCATCTGGCGCAGCTGAAGCTGACC
TTGGCCCTGAGTGACATGCCCCAGGATGAGGTGCTGGCATTCCTTGGCAT
GAACAGGCCAGGGTGGGACAGGGGCATGGTGGCCTCTCCCCCGGGGGGGG
GCAGCAGG
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