mRNA_D-mesarthrocarpus_Contig10594.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10594.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10594.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10594.1.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 2.590e-63
Identity = 126/259 (48.65%), Postives = 157/259 (60.62%), Query Frame = 1 
Query:   13 GSLMGAWVGEQDFIFDRETELGDPDTQEVQGAEEELILRVELRALAASIVVVISQLDLAQIPYVVENVDPSHRVYYRQKGADWFPWQSVGPGEKRGYTWEEPLLPPRLLIRVGPETCGGAQVLHGKNHGR-IKAAKRLQSMGLGIVASEDAGTFSGPVKLIRLDEIGSEERLPLPEWEF-----------------------------------------EEGMGDGKGKVRSRFMHARVTAEGPTRILLVSSNKDIRK 663
            GS+ G          D + +LG  + QE       ++LRVELR LAASIVVV+ QLD +Q+PYVVENVDPSHRVY+RQ+GADW PWQSVGPGEK+GY WEEPLLPPRLL+RVGP+   G  +  G        AA  LQ+ G+G V+SE+AGT SGP+KLIRLDEIG+EE+LPLPEW                                              +G G     ++ +HARV+AEG TR+LL+SS+KDIR+
Sbjct: 5589 GSVAGXXXXXXXMDGDGQDDLGHAEPQE-------MMLRVELRPLAASIVVVVRQLDPSQVPYVVENVDPSHRVYFRQRGADWCPWQSVGPGEKQGYVWEEPLLPPRLLVRVGPDFLRGGDLNRGDGGSAPAVAAAHLQAWGVGRVSSEEAGTLSGPIKLIRLDEIGTEEKLPLPEWXXXXXXXXXXXXXXXXXXXXXARHRSSSDXXXXXXXXXXXRSSSADLGRGGSVSGAKHVHARVSAEGRTRVLLISSHKDIRR 5840
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BLAST of mRNA_D-mesarthrocarpus_Contig10594.1.1 vs. uniprot
Match: A0A6H5KMI8_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI8_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.670e-28
Identity = 69/163 (42.33%), Postives = 91/163 (55.83%), Query Frame = 1 
Query:  301 YTWEEPLLPPRLLIRVGPETCGGAQVLHGKNHGR-IKAAKRLQSMGLGIVASEDAGTFSGPVKLIRLDEIGSEERLPLPEWEFEEG-----------------------------------------MGDGKGKVRSRFMHARVTAEGPTRILLVSSNKDIRK 663
            Y WEEPLLPPRLL+RVGP+   G  +  G        AA RLQ+ G+G V+SE+ GT SGP+K+IRLDEIG+EE+LPLPEWE++                                           +G G     ++ +HARV+AEG TR+LL+SS+KDIR+
Sbjct:   98 YVWEEPLLPPRLLVRVGPDFLRGGDLNRGDGGSAPAVAAARLQAWGVGRVSSEETGTLSGPIKIIRLDEIGTEEKLPLPEWEWDHSDSARXXXXXXXXXXXXXXXXXXXXXSVXXXXXXXERSSSADLGRGGSVSGAKHIHARVSAEGRTRVLLISSHKDIRR 260
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BLAST of mRNA_D-mesarthrocarpus_Contig10594.1.1 vs. uniprot
Match: A0A6H5KNL1_9PHAE (SHR-BD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNL1_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.650e-24
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:   76 GDPDTQEVQGAEEELILRVELRALAASIVVVISQLDLAQIPYVVENVDPSHRVYYRQKGADWFPWQSVGPGEKRGY 303
            GD      Q   +E++LRVELR LAASIVVV+ QLD +Q+PYVVENVDPSHRVY+RQ+GADW PWQSVGPGEK+G+
Sbjct:  574 GDDQDDRGQVEPQEMMLRVELRPLAASIVVVVRQLDPSQVPYVVENVDPSHRVYFRQRGADWCPWQSVGPGEKQGW 649
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10594.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI2.590e-6348.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMI8_9PHAE1.670e-2842.33C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A6H5KNL1_9PHAE2.650e-2469.74SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10594contigD-mesarthrocarpus_Contig10594:1499..3537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G8Y9
PFAMsSHR-BD,VPS13_mid_rpt
Model size664
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue6.03e-64
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
Cds size642
COG categoryU
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10594.1.1prot_D-mesarthrocarpus_Contig10594.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10594 1499..3516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789194.998434-CDS-D-mesarthrocarpus_Contig10594:1498..16671680789194.998434-CDS-D-mesarthrocarpus_Contig10594:1498..1667Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10594 1499..1667 -
1680789195.009851-CDS-D-mesarthrocarpus_Contig10594:2002..21971680789195.009851-CDS-D-mesarthrocarpus_Contig10594:2002..2197Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10594 2003..2197 -
1680789195.0219622-CDS-D-mesarthrocarpus_Contig10594:2639..27461680789195.0219622-CDS-D-mesarthrocarpus_Contig10594:2639..2746Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10594 2640..2746 -
1680789195.032532-CDS-D-mesarthrocarpus_Contig10594:3090..31801680789195.032532-CDS-D-mesarthrocarpus_Contig10594:3090..3180Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10594 3091..3180 -
1680789195.0412-CDS-D-mesarthrocarpus_Contig10594:3435..35161680789195.0412-CDS-D-mesarthrocarpus_Contig10594:3435..3516Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10594 3436..3516 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789195.050624-UTR-D-mesarthrocarpus_Contig10594:3516..35371680789195.050624-UTR-D-mesarthrocarpus_Contig10594:3516..3537Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10594 3517..3537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10594.1.1

>prot_D-mesarthrocarpus_Contig10594.1.1 ID=prot_D-mesarthrocarpus_Contig10594.1.1|Name=mRNA_D-mesarthrocarpus_Contig10594.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=214bp
MGAWVGEQDFIFDRETELGDPDTQEVQGAEEELILRVELRALAASIVVVI
SQLDLAQIPYVVENVDPSHRVYYRQKGADWFPWQSVGPGEKRGYTWEEPL
LPPRLLIRVGPETCGGAQVLHGKNHGRIKAAKRLQSMGLGIVASEDAGTF
SGPVKLIRLDEIGSEERLPLPEWEFEEGMGDGKGKVRSRFMHARVTAEGP
TRILLVSSNKDIRK
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mRNA from alignment at D-mesarthrocarpus_Contig10594:1499..3537-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10594.1.1 ID=mRNA_D-mesarthrocarpus_Contig10594.1.1|Name=mRNA_D-mesarthrocarpus_Contig10594.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2039bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10594:1499..3537- (Discosporangium mesarthrocarpum MT17_79)
GCTGGGGCAAAGGGTTCTCTTATGGGGGCGTGGGTGGGTGAGCAGGACTT
CATCTTCGACAGGGAGACAGAATTAGGAGACCCTGATACACAGGAGGTGC
AGGTGAGGGGAGAGAAGAGGGACAAAGGGAAAAGTATCTTCTGGGAGAAG
GGGTAAGAAAAAGGATAGGGATTGGGAAGGTGTATGTAGGGGGTTGGGTG
GGTAGGTGGGTGGGCAGGGAACTGCGTGCATTGCAGTGCTCCGTGGCCCG
CACCTTTGAAACAGAATGACTGTTGGCAGTGCACATGCACTTGAAAGCAA
GAGTTTAACCTCTGTCTCTATCGTGGGCTTCTGGCCTTCTCTGTGCGCTG
CCTGAAGGGCGCTGAGGAGGAGCTGATTCTGAGGGTGGAGCTGCGAGCCC
TTGCGGCCTCCATTGTGGTGGTCATCAGCCAGCTGGACCTTGCTCAGGCA
TGTGCTGTGGAGTGCAGTGCCGAGTGTATTGTCTTTAGACAACAACGGGT
CTTGACTGGTCTCCACCGCAGAAGTTCTTGCCAACCTTTTAGGGGGCTAC
TCTAGCATCGTTCACATTGTCCATGGTGGTGTAACTAACTCTCTTGTGCC
ATTGAGAACAGGGCAAGCAGTGACCTGTTGCAGGGAGGGGTGTTGATTTT
GCCTGTGCATGTTTGCCTTGTGCCCCCAGGGCAAGGATCTTGTGGATACC
CCCTCGCACCGGCGCTGACCGTTCCGCCTCCTTTGCGGTCGTACCCTCTC
CTCTTCCCACCCCCCCGATCCCATGGCCTGGACATGGAAAGATTCCCTAC
GTGGTGGAAAATGTGGATCCCAGCCACCGAGTCTACTACCGTCAGAAGGG
GGCTGATTGGTTTCCATGGCAGTCTGTCGGTCCGGGGGAAAAACGGGGGT
GAGTGAGAAGAATAATCTGCTCTTTTGCTCCGTTGCCTGGAGGGTATACA
GCGGGAGGGAGGCTGTCTGTCCGCTACTCCCGCGTTAAGATCGGGTTTCC
GTCTTTGTTGGCTTTCTTGTGGAGACGGCTGTTGCCGAATCAAGGGACAA
CGAACGAAACATGGGCTATGCTTCGTTCTTGTATCTTTTTTCTTTTCTTG
TCACCCCTGTTGGAGGGGGACAAGAAAAACCTCGCACACGCTGCCAACGC
ACAAGGGTGAAGCTGAACTCCATCACCCTCCCTACATGCACACAACTCAT
CTTTCTCTCACCCCTTAAGGAACACGCTCACACATTTCATGTGCGGTAGG
TACCCTTCTAGCACCGCTGCCCTCTCTATCCACACGCTCCTCAGCATCCG
AGCTTTCGAACCCTAACCCCAACCACCACCTGCCTCAAAGGTATACGTGG
GAAGAGCCACTCCTCCCACCCCGCCTTCTTATTCGAGTGGGGCCAGAGAC
TTGTGGGGGAGCCCAGGTACTCCATGGGAAAAATCATGGCCGAATCAAGG
CTGCCAAAAGGCTGCAGTCAATGGGACTTGGTATTGTGGCTTCAGAGGAT
GCAGGGACATTCTCCGGGCCTGTAAAACTCATCAGGTATGAAGGGACACC
TTTTTTTTGGGGGAGGGATGGGGGGGGGGGGTAGACTGGGCTGTTTCCTG
GGGAGTTTCGGTTTGATGCAAGGCATCCTTTGCCTTGACTGTGTTGTGAT
CATCACCCTTGCCGTCAAATCTCTTTTTTTTGCACTTTCCTGAGTCCCGT
TGTTTCCAGACATTAGTGACCCCCCTAACTGCTGACCCGATCATTCAAAC
CTGAACGCTTTAATTTATCCCACAGCAACCCCATGCCTTCAAGGCGCTGC
AGCTGCTTGCACATCAAGATGCCATGCTCAGCATGACTACCACGTTCCCG
TTGGTCTTGTGTCACCCCAGGCTTGATGAGATAGGTTCAGAGGAACGCCT
TCCCCTCCCAGAGTGGGAGTTTGAGGAAGGGATGGGAGATGGTAAGGGCA
AGGTTCGATCAAGGTTCATGCACGCGAGAGTGACTGCTGAGGGTCCCACA
CGCATACTTCTGGTGTCAAGCAACAAGGATATCCGGAAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10594:1499..3537-

>mRNA_D-mesarthrocarpus_Contig10594.1.1 ID=mRNA_D-mesarthrocarpus_Contig10594.1.1|Name=mRNA_D-mesarthrocarpus_Contig10594.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=642bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10594:1499..3537- (Discosporangium mesarthrocarpum MT17_79)
ATGGGGGCGTGGGTGGGTGAGCAGGACTTCATCTTCGACAGGGAGACAGA
ATTAGGAGACCCTGATACACAGGAGGTGCAGGGCGCTGAGGAGGAGCTGA
TTCTGAGGGTGGAGCTGCGAGCCCTTGCGGCCTCCATTGTGGTGGTCATC
AGCCAGCTGGACCTTGCTCAGATTCCCTACGTGGTGGAAAATGTGGATCC
CAGCCACCGAGTCTACTACCGTCAGAAGGGGGCTGATTGGTTTCCATGGC
AGTCTGTCGGTCCGGGGGAAAAACGGGGGTATACGTGGGAAGAGCCACTC
CTCCCACCCCGCCTTCTTATTCGAGTGGGGCCAGAGACTTGTGGGGGAGC
CCAGGTACTCCATGGGAAAAATCATGGCCGAATCAAGGCTGCCAAAAGGC
TGCAGTCAATGGGACTTGGTATTGTGGCTTCAGAGGATGCAGGGACATTC
TCCGGGCCTGTAAAACTCATCAGGCTTGATGAGATAGGTTCAGAGGAACG
CCTTCCCCTCCCAGAGTGGGAGTTTGAGGAAGGGATGGGAGATGGTAAGG
GCAAGGTTCGATCAAGGTTCATGCACGCGAGAGTGACTGCTGAGGGTCCC
ACACGCATACTTCTGGTGTCAAGCAACAAGGATATCCGGAAG
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