mRNA_D-mesarthrocarpus_Contig10588.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10588.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10588.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10588.1.1 vs. uniprot
Match: D7G359_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G359_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 6.590e-12
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 LDTAVSVGPRYTFLVYNASVHAWNILRPALRDGLAKHHTRDLAR 132
            LD A+  GPRY FLV+N SVHAWN+LRPAL  G A HH ++LAR
Sbjct:  146 LDVAIEGGPRYAFLVHNVSVHAWNVLRPALTAGRAGHHAKELAR 189
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BLAST of mRNA_D-mesarthrocarpus_Contig10588.1.1 vs. uniprot
Match: A0A6H5JKR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKR4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.670e-11
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 LDTAVSVGPRYTFLVYNASVHAWNILRPALRDGLAKHHTRDLAR 132
            LD A   GPRY FLV+N SVHAWNILRPAL  G A HH ++LAR
Sbjct:  227 LDIATEGGPRYAFLVHNVSVHAWNILRPALTAGRAGHHAKELAR 270
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BLAST of mRNA_D-mesarthrocarpus_Contig10588.1.1 vs. uniprot
Match: A0A388KZ34_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KZ34_CHABU)

HSP 1 Score: 50.4 bits (119), Expect = 8.620e-6
Identity = 24/53 (45.28%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:    1 LDTAVSVGPRYTFLVYNASVHAWNILRPALRDGLAKHHTRDLARCVCAPLSLP 159
            LD AV  G RY+FLVYN SVH W++ RP  R GL       + R V +  ++P
Sbjct:  222 LDVAVGGGARYSFLVYNGSVHYWHVARPLHRPGLRSRLISSMERVVTSLEAVP 274
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10588.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G359_ECTSI6.590e-1265.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKR4_9PHAE1.670e-1168.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A388KZ34_CHABU8.620e-645.28Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10588contigD-mesarthrocarpus_Contig10588:3817..3975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G359
Preferred nameCFAP46
PFAMsPeptidase_C50
Model size159
Max annot lvl2759|Eukaryota
KEGG koko:K18626
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons1
Evalue1.08e-12
EggNOG OGs2C6EK@1|root,2QS2Z@2759|Eukaryota
Descriptioncilium movement involved in cell motility
Cds size159
COG categoryS
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789194.1844752-CDS-D-mesarthrocarpus_Contig10588:3816..39751680789194.1844752-CDS-D-mesarthrocarpus_Contig10588:3816..3975Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10588 3817..3975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10588.1.1prot_D-mesarthrocarpus_Contig10588.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10588 3817..3975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10588.1.1

>prot_D-mesarthrocarpus_Contig10588.1.1 ID=prot_D-mesarthrocarpus_Contig10588.1.1|Name=mRNA_D-mesarthrocarpus_Contig10588.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=53bp
LDTAVSVGPRYTFLVYNASVHAWNILRPALRDGLAKHHTRDLARCVCAPL
SLP
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mRNA from alignment at D-mesarthrocarpus_Contig10588:3817..3975-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10588.1.1 ID=mRNA_D-mesarthrocarpus_Contig10588.1.1|Name=mRNA_D-mesarthrocarpus_Contig10588.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=159bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10588:3817..3975- (Discosporangium mesarthrocarpum MT17_79)
CTGGACACGGCAGTCTCGGTCGGCCCAAGGTATACCTTCTTGGTGTACAA
CGCCTCCGTGCACGCATGGAACATTCTGAGACCGGCACTACGAGATGGCT
TGGCGAAGCATCACACAAGGGACCTTGCCAGGTGTGTGTGTGCCCCTCTT
TCTCTGCCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10588:3817..3975-

>mRNA_D-mesarthrocarpus_Contig10588.1.1 ID=mRNA_D-mesarthrocarpus_Contig10588.1.1|Name=mRNA_D-mesarthrocarpus_Contig10588.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=159bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10588:3817..3975- (Discosporangium mesarthrocarpum MT17_79)
CTGGACACGGCAGTCTCGGTCGGCCCAAGGTATACCTTCTTGGTGTACAA
CGCCTCCGTGCACGCATGGAACATTCTGAGACCGGCACTACGAGATGGCT
TGGCGAAGCATCACACAAGGGACCTTGCCAGGTGTGTGTGTGCCCCTCTT
TCTCTGCCC
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