mRNA_D-mesarthrocarpus_Contig10585.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10585.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10585.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10585.2.1 vs. uniprot
Match: W7T7X5_9STRA (Soluble pyridine nucleotide transhydrogenase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7X5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.390e-25
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    7 LKKALAEGR---RSSENLFPYGIYTIPEISMVGKTEQDLTLEGVTYEVGVAQYRELAKGQMLGGVDGFLKL 210
            +K  L +G    R +E LFPYGIYTIPEISM+GKTE+ LT E V YEVG+A Y+ELAKGQMLGG+DGFLKL
Sbjct:   21 VKSVLQQGGFLGRDTERLFPYGIYTIPEISMIGKTEEQLTAEKVPYEVGIANYKELAKGQMLGGMDGFLKL 91
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BLAST of mRNA_D-mesarthrocarpus_Contig10585.2.1 vs. uniprot
Match: D7FHH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH4_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 6.930e-24
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:   13 KALAEGR---RSSENLFPYGIYTIPEISMVGKTEQDLTLEGVTYEVGVAQYRELAKGQMLGGVDGFLKL 210
            K++A+G    R SE LFPYGIYTIPE+SM+GKTE  LT EGV+YEVG+A Y+ELAKGQMLGG DGFLKL
Sbjct:  375 KSVADGGFLGRESEQLFPYGIYTIPEVSMIGKTEAQLTAEGVSYEVGLADYQELAKGQMLGGADGFLKL 443
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BLAST of mRNA_D-mesarthrocarpus_Contig10585.2.1 vs. uniprot
Match: A0A4D9CNB1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNB1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.030e-23
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    7 LKKALAEGR---RSSENLFPYGIYTIPEISMVGKTEQDLTLEGVTYEVGVAQYRELAKGQMLGGVDGFLKL 210
            +K  L +G    R +E LFPYGIYTIPEISM+GKTE+ LT E V YEVG+A Y+ELAKGQMLGG+DGFLKL
Sbjct:  358 VKSVLQQGGFLGRDTERLFPYGIYTIPEISMIGKTEEQLTAEKVPYEVGIANYKELAKGQMLGGMDGFLKL 428
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BLAST of mRNA_D-mesarthrocarpus_Contig10585.2.1 vs. uniprot
Match: A0A835ZER9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER9_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.610e-22
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:   34 RSSENLFPYGIYTIPEISMVGKTEQDLTLEGVTYEVGVAQYRELAKGQMLGGVDGFLKL 210
            RSSE+LFPYGIYTIPEISM+GK E  LT EGV YE+GVA + ELAKGQMLGG DGFLKL
Sbjct:  463 RSSEHLFPYGIYTIPEISMIGKPEAQLTEEGVPYEIGVADFTELAKGQMLGGADGFLKL 521
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BLAST of mRNA_D-mesarthrocarpus_Contig10585.2.1 vs. uniprot
Match: A0A484EHW3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHW3_BRELC)

HSP 1 Score: 94.0 bits (232), Expect = 7.960e-21
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:   31 RRSSENLFPYGIYTIPEISMVGKTEQDLTLEGVTYEVGVAQYRELAKGQMLGGVDGFLKL 210
            R  S  +FP+GIYT+PEISMVGK EQ LT EGV YEVGVA+Y ELAKGQMLGGV GFLK+
Sbjct:  429 RMRSGEVFPFGIYTVPEISMVGKNEQQLTKEGVPYEVGVARYEELAKGQMLGGVPGFLKI 488
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BLAST of mRNA_D-mesarthrocarpus_Contig10585.2.1 vs. uniprot
Match: A0A0P1AKW9_PLAHL (Soluble pyridine nucleotide n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKW9_PLAHL)

HSP 1 Score: 94.0 bits (232), Expect = 8.110e-21
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:   31 RRSSENLFPYGIYTIPEISMVGKTEQDLTLEGVTYEVGVAQYRELAKGQMLGGVDGFLKL 210
            R  S  +FP+GIYT+PEISMVGK EQ LT EGV YEVGVA+Y ELAKGQMLGGV GFLK+
Sbjct:  410 RMRSGEVFPFGIYTVPEISMVGKNEQQLTKEGVPYEVGVARYEELAKGQMLGGVPGFLKI 469
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BLAST of mRNA_D-mesarthrocarpus_Contig10585.2.1 vs. uniprot
Match: A0A662XJN9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJN9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.070e-20
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   31 RRSSENLFPYGIYTIPEISMVGKTEQDLTLEGVTYEVGVAQYRELAKGQMLGGVDGFLKL 210
            R  S  +FP+GIYT+PEISMVGK EQ LT E + YEVGVA+Y ELAKGQMLGGV GFLK+
Sbjct:  149 RMRSGEVFPFGIYTVPEISMVGKNEQQLTKESIPYEVGVARYEELAKGQMLGGVPGFLKI 208
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BLAST of mRNA_D-mesarthrocarpus_Contig10585.2.1 vs. uniprot
Match: A0A2D4CFW3_PYTIN (Soluble pyridine nucleotide transhydrogenase putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFW3_PYTIN)

HSP 1 Score: 92.4 bits (228), Expect = 2.920e-20
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:   31 RRSSENLFPYGIYTIPEISMVGKTEQDLTLEGVTYEVGVAQYRELAKGQMLGGVDGFLKL 210
            R  S  +FP+GIYTIPEISMVGK+EQ LT E V YEVGVA+Y ELAKGQMLGGV GFLK+
Sbjct:  426 RMRSGEVFPFGIYTIPEISMVGKSEQQLTRENVPYEVGVARYEELAKGQMLGGVPGFLKI 485
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BLAST of mRNA_D-mesarthrocarpus_Contig10585.2.1 vs. uniprot
Match: A0A2D4CH35_PYTIN (Soluble pyridine nucleotide transhydrogenase putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CH35_PYTIN)

HSP 1 Score: 92.4 bits (228), Expect = 2.930e-20
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:   31 RRSSENLFPYGIYTIPEISMVGKTEQDLTLEGVTYEVGVAQYRELAKGQMLGGVDGFLKL 210
            R  S  +FP+GIYTIPEISMVGK+EQ LT E V YEVGVA+Y ELAKGQMLGGV GFLK+
Sbjct:  961 RMRSGEVFPFGIYTIPEISMVGKSEQQLTRENVPYEVGVARYEELAKGQMLGGVPGFLKI 1020
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BLAST of mRNA_D-mesarthrocarpus_Contig10585.2.1 vs. uniprot
Match: A0A2D4BET8_PYTIN (Soluble pyridine nucleotide transhydrogenase putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BET8_PYTIN)

HSP 1 Score: 92.4 bits (228), Expect = 2.940e-20
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   16 ALAEGRRSSENLFPYGIYTIPEISMVGKTEQDLTLEGVTYEVGVAQYRELAKGQMLGGVDGFLKL 210
            ++ +GR +S  +FP+GIYTIPEISMVGK+EQ LT E V YEVGVA+Y ELAKGQMLGGV GFLK+
Sbjct:  394 SMEQGRLAS--VFPFGIYTIPEISMVGKSEQQLTRENVPYEVGVARYEELAKGQMLGGVPGFLKI 456
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10585.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T7X5_9STRA4.390e-2569.01Soluble pyridine nucleotide transhydrogenase n=1 T... [more]
D7FHH4_ECTSI6.930e-2472.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CNB1_9STRA6.030e-2369.01Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835ZER9_9STRA2.610e-2279.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A484EHW3_BRELC7.960e-2175.00Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0P1AKW9_PLAHL8.110e-2175.00Soluble pyridine nucleotide n=1 Tax=Plasmopara hal... [more]
A0A662XJN9_9STRA1.070e-2071.67Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A2D4CFW3_PYTIN2.920e-2075.00Soluble pyridine nucleotide transhydrogenase putat... [more]
A0A2D4CH35_PYTIN2.930e-2075.00Soluble pyridine nucleotide transhydrogenase putat... [more]
A0A2D4BET8_PYTIN2.940e-2070.77Soluble pyridine nucleotide transhydrogenase putat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10585contigD-mesarthrocarpus_Contig10585:184..1372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FHH4
PFAMsPyr_redox_2,Pyr_redox_dim
Model size210
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.14e-24
EggNOG OGsCOG1249@1|root,KOG1335@2759|Eukaryota
Descriptiondihydrolipoyl dehydrogenase activity
Cds size210
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.9844599-CDS-D-mesarthrocarpus_Contig10585:183..2311680789193.9844599-CDS-D-mesarthrocarpus_Contig10585:183..231Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10585 184..231 -
1680789193.9990904-CDS-D-mesarthrocarpus_Contig10585:1210..13721680789193.9990904-CDS-D-mesarthrocarpus_Contig10585:1210..1372Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10585 1211..1372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10585.2.1prot_D-mesarthrocarpus_Contig10585.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10585 184..1372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10585.2.1

>prot_D-mesarthrocarpus_Contig10585.2.1 ID=prot_D-mesarthrocarpus_Contig10585.2.1|Name=mRNA_D-mesarthrocarpus_Contig10585.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=70bp
MSLKKALAEGRRSSENLFPYGIYTIPEISMVGKTEQDLTLEGVTYEVGVA
QYRELAKGQMLGGVDGFLKL
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mRNA from alignment at D-mesarthrocarpus_Contig10585:184..1372-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10585.2.1 ID=mRNA_D-mesarthrocarpus_Contig10585.2.1|Name=mRNA_D-mesarthrocarpus_Contig10585.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1189bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10585:184..1372- (Discosporangium mesarthrocarpum MT17_79)
ATGAGCCTGAAGAAGGCCCTGGCGGAGGGGAGGAGGTCCTCCGAGAACCT
GTTCCCCTACGGCATCTACACCATCCCTGAGATTTCCATGGTGGGGAAAA
CGGAGCAGGACCTGACGTTAGAGGGCGTGACCTATGAGGTTGGGGTGGCC
CAATATCGCGAGGTGGGCAAAGCAATCCTGCATGATACGGGGGATGGAGA
GGGGATGGGGTTGGGGGGGTAGCAGGGGAGAGAAGAGGGTGTCCTCAGGA
TGGTGGGAAGGCGGTGGGGGTGGAGGAGGGCCTTGCTGATGTGTTGGAGG
CATTGGGAGACCGATCGCAGGAACGGTGTACTGTGAGAAGGGTATATCCA
TGATGGAGTATTGCTCTGCTACATGCAAGGCTTGTTAGGGTTAGGGTTAC
GATTTTATTTGGGAGGTACGGTGCTACACCGTAGGCAGAGCTCCGCATTG
CAGTGCCGAGATTTCGTGAGGTGGCAGTCACCAAGGGATGGGTTAGGGTC
AGGGTTAGGTTGACCTGATGCTCAACTGTAGTCACTCGAGTAGGATTGAT
GGAACCATGTTTGATTGTTTGATTGTAATAATATAATCATAATGTAATCA
TTATATAATCATATTAATAATATTGATACTATAATAATTTGATGATACAT
TGTTATTGATTGAGACAATGGGCTTTGGTTCGTTAATGTGTGAGGGGGGC
TTCACCCTCTTCTGCCAGGGATCCTGTCGGGCAGATTTTTTTTATGCAGG
ATGCAGAGTGATTTTTGTGGTCCCCGTGCCTGCTCTCTCGTGTTTCCTAT
TCATGTCAACATGGGGAGAGCTGCTCAGCAATTTTTGTTCTGCTTCTGCA
AGCGTTTCAGAGGTTCCCTGCAGCTCTTGTGGACCATTAGCCCTAATGGG
CTGCTCTCCTTCCCATTTTTTTAAAACAGATTTATTTATATCCTACTAAC
AAAGTTGAGCGCCATCCACCAAACCAGGCTGATGACATGAATGAGCTGTA
ACTGCCTCCCCGTCACGCTTACCGGAACGCTAACGTGCTCATCATCATAC
CGCTGCTCCTCCCCCCTCCCCTCCCCACCCTAACCCGTCCTTTTTTTCAT
GGGCCCTGTGTGCGGTGCTCACGCCGAGAACCGCCGAACAGCTCGCTAAA
GGGCAGATGCTGGGAGGAGTGGACGGCTTCTTGAAACTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10585:184..1372-

>mRNA_D-mesarthrocarpus_Contig10585.2.1 ID=mRNA_D-mesarthrocarpus_Contig10585.2.1|Name=mRNA_D-mesarthrocarpus_Contig10585.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=210bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10585:184..1372- (Discosporangium mesarthrocarpum MT17_79)
ATGAGCCTGAAGAAGGCCCTGGCGGAGGGGAGGAGGTCCTCCGAGAACCT
GTTCCCCTACGGCATCTACACCATCCCTGAGATTTCCATGGTGGGGAAAA
CGGAGCAGGACCTGACGTTAGAGGGCGTGACCTATGAGGTTGGGGTGGCC
CAATATCGCGAGCTCGCTAAAGGGCAGATGCTGGGAGGAGTGGACGGCTT
CTTGAAACTG
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