mRNA_D-mesarthrocarpus_Contig10578.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10578.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10578.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10578.2.1 vs. uniprot
Match: D8LC34_ECTSI (Transmembrane protein 138 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC34_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 9.670e-18
Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:    1 FKAKVLAMVVLIAADIFLNSSVEFDDYDS-AGSSAHSTVLXXXXXXXXXXXXXXXXXXXXIMFDTYPFRVGLMGMLMSQYLSVYAINMFYIFMTACIYGYRVVSM 312
            F+ K+  MV L   D+ LNSSVE + + +  G+    T L                    +MF+TYPFRVGLMGML SQYL+VY IN+ Y   TAC+YGYRV +M
Sbjct:   19 FRVKLFIMVFLTVVDMTLNSSVEHETFGTWDGTGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRVAAM 123
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BLAST of mRNA_D-mesarthrocarpus_Contig10578.2.1 vs. uniprot
Match: A0A6H5JIR8_9PHAE (Transmembrane protein 138 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.310e-17
Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:    1 FKAKVLAMVVLIAADIFLNSSVEFDDYDS-AGSSAHSTVLXXXXXXXXXXXXXXXXXXXXIMFDTYPFRVGLMGMLMSQYLSVYAINMFYIFMTACIYGYRVVSM 312
            F+ K+  MV L   D+ LNSSVE + + +  G+    T L                    +MF+TYPFRVGLMGML SQYL+VY IN+ Y   TAC+YGYRV +M
Sbjct:   19 FRVKLFIMVFLTVVDMTLNSSVEHETFGTWDGTGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYIINVLYFVTTACVYGYRVAAM 123
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BLAST of mRNA_D-mesarthrocarpus_Contig10578.2.1 vs. uniprot
Match: A0A836CBT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT6_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.490e-11
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:    1 FKAKVLAMVVLIAADIFLNSSVEFDDYDS----AGSSAHSTVLXXXXXXXXXXXXXXXXXXXXIMFDTYPFRVGLMGMLMSQYLSVYAINMFYIFMTACIYGYRVVSM 312
            F+AK+  +++L+ AD+ LN SVE+D Y       G     T+L                    +MFDT+PF+ GLMG++   Y  VYA+N  YI  TA +YGYR+  +
Sbjct: 1294 FQAKLTVLMLLMLADVLLNGSVEYDSYSQLTLDGGGDDVDTILVLVHGVQLLVQVAVLLTLFIMMFDTWPFKAGLMGLVAVHYKWVYAVNGAYITATALLYGYRLAKL 1401
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10578.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LC34_ECTSI9.670e-1844.76Transmembrane protein 138 n=1 Tax=Ectocarpus silic... [more]
A0A6H5JIR8_9PHAE1.310e-1744.76Transmembrane protein 138 n=1 Tax=Ectocarpus sp. C... [more]
A0A836CBT6_9STRA2.490e-1136.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10578contigD-mesarthrocarpus_Contig10578:3256..3928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size327
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionTransmembrane protein 138
Ec32 orthologEc-20_004270.1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.410847-CDS-D-mesarthrocarpus_Contig10578:3255..34511680789193.410847-CDS-D-mesarthrocarpus_Contig10578:3255..3451Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10578 3256..3451 -
1680789193.4263215-CDS-D-mesarthrocarpus_Contig10578:3797..39071680789193.4263215-CDS-D-mesarthrocarpus_Contig10578:3797..3907Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10578 3798..3907 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.4361477-UTR-D-mesarthrocarpus_Contig10578:3907..39281680789193.4361477-UTR-D-mesarthrocarpus_Contig10578:3907..3928Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10578 3908..3928 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10578.2.1prot_D-mesarthrocarpus_Contig10578.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10578 3256..3907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10578.2.1

>prot_D-mesarthrocarpus_Contig10578.2.1 ID=prot_D-mesarthrocarpus_Contig10578.2.1|Name=mRNA_D-mesarthrocarpus_Contig10578.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=102bp
MVVLIAADIFLNSSVEFDDYDSAGSSAHSTVLALVLGLQLIIQVSVFLSL
FLIMFDTYPFRVGLMGMLMSQYLSVYAINMFYIFMTACIYGYRVVSMCTA
Y*
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mRNA from alignment at D-mesarthrocarpus_Contig10578:3256..3928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10578.2.1 ID=mRNA_D-mesarthrocarpus_Contig10578.2.1|Name=mRNA_D-mesarthrocarpus_Contig10578.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=673bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10578:3256..3928- (Discosporangium mesarthrocarpum MT17_79)
TTCAAAGCCAAGGTGCTTGCCATGGTCGTGCTGATCGCTGCGGATATCTT
CCTGAACAGCAGTGTCGAGTTCGACGACTACGACTCCGCAGGCTCAAGCG
CACACAGTACAGTGCTCGCCCTTGTCTTAGGGTGAGTAATTGGAGGATGA
TGACACTAACAAATCACGGAATTATGGATCACTTATGTGTGAGATAGAGT
ATGTATCACAGCAGAAGACCTTGACAAGCTTTTCAAAGTTATCACTTGCA
TGGGACTGACCAACTTACTAATACATCATGCCTACAATGCCACGCCAACA
ATGCTATTGCCGCTCAAGGACAGAGCTTAGAGGTTACTGTATCGCTCTCC
CTTCATGTGATTTCAGGGTACAGACTCTGTATTCTGTACGGAAAAAGCAA
AAAATATTGACCTGTCCTTTTATAGTGCCGAAGTGCTTAATTTAGTTTTG
TTTTCTGTTATCTCCTTCTTACCCCAGACTGCAGCTTATCATACAGGTTT
CGGTGTTCTTGAGTCTGTTTCTCATCATGTTCGACACTTACCCCTTCCGA
GTGGGTCTAATGGGTATGCTTATGTCCCAGTACCTCTCCGTGTACGCCAT
CAACATGTTCTACATCTTCATGACTGCATGCATCTATGGGTATCGGGTGG
TGAGTATGTGCACAGCCTATTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10578:3256..3928-

>mRNA_D-mesarthrocarpus_Contig10578.2.1 ID=mRNA_D-mesarthrocarpus_Contig10578.2.1|Name=mRNA_D-mesarthrocarpus_Contig10578.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=306bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10578:3256..3928- (Discosporangium mesarthrocarpum MT17_79)
ATGGTCGTGCTGATCGCTGCGGATATCTTCCTGAACAGCAGTGTCGAGTT
CGACGACTACGACTCCGCAGGCTCAAGCGCACACAGTACAGTGCTCGCCC
TTGTCTTAGGACTGCAGCTTATCATACAGGTTTCGGTGTTCTTGAGTCTG
TTTCTCATCATGTTCGACACTTACCCCTTCCGAGTGGGTCTAATGGGTAT
GCTTATGTCCCAGTACCTCTCCGTGTACGCCATCAACATGTTCTACATCT
TCATGACTGCATGCATCTATGGGTATCGGGTGGTGAGTATGTGCACAGCC
TATTGA
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