mRNA_D-mesarthrocarpus_Contig10573.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10573.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10573.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10573.1.1 vs. uniprot
Match: A0A6H5KP68_9PHAE (Eukaryotic translation initiation factor 3 subunit H n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP68_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.500e-18
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 RQLEAPNRMESLLISNQINAYCSQINKFAGSSFEKLFLAGSLQKEA 138
            ++L+APNRME LLISNQI+AYCSQINKFAGSSFEKLFLAGSLQKEA
Sbjct:  291 KKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKEA 336
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BLAST of mRNA_D-mesarthrocarpus_Contig10573.1.1 vs. uniprot
Match: A0A836CJJ9_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.140e-16
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 RQLEAPNRMESLLISNQINAYCSQINKFAGSSFEKLFLAGSLQKEA 138
            R+ +APNRMESLLIS QI+AYCSQIN+F GSSFEKLFLAGSLQ+EA
Sbjct:  301 RRPDAPNRMESLLISTQISAYCSQINRFTGSSFEKLFLAGSLQREA 346
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BLAST of mRNA_D-mesarthrocarpus_Contig10573.1.1 vs. uniprot
Match: A0A7R9WF90_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WF90_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.160e-12
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   10 EAPNRMESLLISNQINAYCSQINKFAGSSFEKLFLAGSLQKE 135
            +AP RMESLLISNQI  YC Q++KFAG+ F KLFLAG L KE
Sbjct:   55 DAPKRMESLLISNQIRTYCDQVDKFAGAGFSKLFLAGGLHKE 96
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BLAST of mRNA_D-mesarthrocarpus_Contig10573.1.1 vs. uniprot
Match: A0A7S1GHL4_CYCTE (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHL4_CYCTE)

HSP 1 Score: 64.3 bits (155), Expect = 7.290e-11
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   10 EAPNRMESLLISNQINAYCSQINKFAGSSFEKLFLAGSLQKE 135
            +AP RMESLLISNQI  YC Q++KFAG  F KLFLAG L KE
Sbjct:  288 DAPKRMESLLISNQIRGYCDQMDKFAGGGFSKLFLAGGLHKE 329
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BLAST of mRNA_D-mesarthrocarpus_Contig10573.1.1 vs. uniprot
Match: A0A7S2U5P3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5P3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.540e-11
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   10 EAPNRMESLLISNQINAYCSQINKFAGSSFEKLFLAGSLQKE 135
            +AP RMESLLI+NQI +YC Q++KFAG  F KLFLA  L KE
Sbjct:   72 DAPRRMESLLITNQIRSYCDQVDKFAGGGFGKLFLASGLHKE 113
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BLAST of mRNA_D-mesarthrocarpus_Contig10573.1.1 vs. uniprot
Match: A0A7S2RWA1_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RWA1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.890e-10
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    4 QLEAPNRMESLLISNQINAYCSQINKFAGSSFEKLFLAGSLQKE 135
            + +AP+RM SLL+SNQI+ YCSQI+ F G+SF KLFLAGSL K+
Sbjct:  289 EFQAPDRMASLLVSNQISEYCSQIHHFTGASFGKLFLAGSLHKD 332
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BLAST of mRNA_D-mesarthrocarpus_Contig10573.1.1 vs. uniprot
Match: A0A6V1NQH4_HETAK (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NQH4_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 1.750e-9
Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   16 PNRMESLLISNQINAYCSQINKFAGSSFEKLFLAGSLQKE 135
            P R+ESLLI+NQIN YC+Q+N+F G+++ KL+LAGSL K+
Sbjct:  292 PPRLESLLIANQINTYCAQVNRFTGAAYSKLYLAGSLHKD 331
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BLAST of mRNA_D-mesarthrocarpus_Contig10573.1.1 vs. uniprot
Match: A0A485KKB4_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKB4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.780e-9
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 RQLEAPNRMESLLISNQINAYCSQINKFAGSSFEKLFLAGSLQKE 135
            + L  P+R+ESLLI+ Q+N YC  IN++AG +F KLFLAG+L KE
Sbjct:  297 KNLNQPSRLESLLITKQMNTYCENINRYAGKNFNKLFLAGNLHKE 341
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BLAST of mRNA_D-mesarthrocarpus_Contig10573.1.1 vs. uniprot
Match: A0A024ULE4_9STRA (Eukaryotic translation initiation factor 3 subunit H n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024ULE4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.450e-9
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 RQLEAPNRMESLLISNQINAYCSQINKFAGSSFEKLFLAGSLQKE 135
            + L  P+R+E+LLI+ Q+N YC  IN++AG SF KLFLAG+L KE
Sbjct:  297 KTLSQPSRLEALLITKQMNTYCENINRYAGKSFNKLFLAGNLHKE 341
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10573.1.1 vs. uniprot
Match: A0A6G0X4T5_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4T5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.460e-9
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 RQLEAPNRMESLLISNQINAYCSQINKFAGSSFEKLFLAGSLQKE 135
            + L  P+R+ESLLI+ Q+N YC  IN++AG SF KLFLAG+L K+
Sbjct:  299 KSLTQPSRLESLLITKQMNTYCENINRYAGKSFNKLFLAGNLHKD 343
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10573.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP68_9PHAE3.500e-1889.13Eukaryotic translation initiation factor 3 subunit... [more]
A0A836CJJ9_9STRA7.140e-1682.61Eukaryotic translation initiation factor 3 subunit... [more]
A0A7R9WF90_9STRA1.160e-1271.43Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1GHL4_CYCTE7.290e-1171.43Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2U5P3_9STRA9.540e-1166.67Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2RWA1_9STRA1.890e-1065.91Eukaryotic translation initiation factor 3 subunit... [more]
A0A6V1NQH4_HETAK1.750e-962.50Eukaryotic translation initiation factor 3 subunit... [more]
A0A485KKB4_9STRA1.780e-957.78Eukaryotic translation initiation factor 3 subunit... [more]
A0A024ULE4_9STRA2.450e-957.78Eukaryotic translation initiation factor 3 subunit... [more]
A0A6G0X4T5_9STRA2.460e-957.78Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10573contigD-mesarthrocarpus_Contig10573:17..157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNG1
Preferred nameEIF3H
PFAMsJAB
Model size141
Max annot lvl2759|Eukaryota
KEGG rclassRC02636
KEGG koko:K03247,ko:K15744
KEGG ReactionR09655
KEGG Pathwayko00906,ko01100,ko01110,ko03013,ko05162,map00906,map01100,map01110,map03013,map05162
KEGG ModuleM00097
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001101,GO:0001944,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0004843,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005852,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006464,GO:0006508,GO:0006518,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0008135,GO:0008150,GO:0008152,GO:0008180,GO:0008233,GO:0008234,GO:0008593,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009733,GO:0009737,GO:0009743,GO:0009744,GO:0009746,GO:0009749,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0016282,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0023051,GO:0023056,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033993,GO:0034248,GO:0034250,GO:0034284,GO:0034285,GO:0034286,GO:0034641,GO:0034645,GO:0036211,GO:0036459,GO:0042221,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045747,GO:0045948,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048880,GO:0048882,GO:0048925,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0060322,GO:0065007,GO:0070011,GO:0070647,GO:0070993,GO:0071541,GO:0071704,GO:0072358,GO:0072359,GO:0080090,GO:0097159,GO:0097305,GO:0101005,GO:0140096,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904,GO:2000112
Exons1
Evalue9.8e-15
EggNOG OGsKOG1560@1|root,KOG1560@2759|Eukaryota
EC5.2.1.12
Descriptiontranslation initiation factor activity
Cds size117
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.2552094-UTR-D-mesarthrocarpus_Contig10573:16..401680789193.2552094-UTR-D-mesarthrocarpus_Contig10573:16..40Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10573 17..40 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.2695854-CDS-D-mesarthrocarpus_Contig10573:40..1571680789193.2695854-CDS-D-mesarthrocarpus_Contig10573:40..157Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10573 41..157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10573.1.1prot_D-mesarthrocarpus_Contig10573.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10573 41..157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10573.1.1

>prot_D-mesarthrocarpus_Contig10573.1.1 ID=prot_D-mesarthrocarpus_Contig10573.1.1|Name=mRNA_D-mesarthrocarpus_Contig10573.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=39bp
MESLLISNQINAYCSQINKFAGSSFEKLFLAGSLQKEA*
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mRNA from alignment at D-mesarthrocarpus_Contig10573:17..157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10573.1.1 ID=mRNA_D-mesarthrocarpus_Contig10573.1.1|Name=mRNA_D-mesarthrocarpus_Contig10573.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=141bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10573:17..157+ (Discosporangium mesarthrocarpum MT17_79)
CGACAGCTGGAGGCCCCGAACAGGATGGAGTCCCTGCTGATCTCGAACCA
GATTAACGCCTACTGCTCCCAGATCAACAAGTTTGCCGGGTCATCCTTCG
AGAAGCTGTTCCTGGCTGGCTCTCTGCAAAAGGAGGCGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10573:17..157+

>mRNA_D-mesarthrocarpus_Contig10573.1.1 ID=mRNA_D-mesarthrocarpus_Contig10573.1.1|Name=mRNA_D-mesarthrocarpus_Contig10573.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=117bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10573:17..157+ (Discosporangium mesarthrocarpum MT17_79)
ATGGAGTCCCTGCTGATCTCGAACCAGATTAACGCCTACTGCTCCCAGAT
CAACAAGTTTGCCGGGTCATCCTTCGAGAAGCTGTTCCTGGCTGGCTCTC
TGCAAAAGGAGGCGTGA
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