mRNA_D-mesarthrocarpus_Contig10566.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10566.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10566.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10566.1.1 vs. uniprot
Match: A0A7S1TSV1_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSV1_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 7.320e-5
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  175 RERTALRLTALKSVAQVMKGLMDASGHGHLIARDQRTRDISLKG-TGVW 318
            R+   L+ +AL +V Q+ + LMDASGH HL+ RDQRTR++S+K  +G W
Sbjct: 1010 RKLRRLQRSALDAVTQIARSLMDASGHAHLLKRDQRTRELSMKHRSGGW 1058
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10566.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1TSV1_9STRA7.320e-551.02Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10566contigD-mesarthrocarpus_Contig10566:198..2239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog653948.CCA15238
Preferred nameFGD5
PFAMsFYVE,PH,PH_9,RhoGEF,Sec7
Model size444
Max annot lvl2759|Eukaryota
KEGG koko:K05724,ko:K12494,ko:K17362,ko:K18442,ko:K20163
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001558,GO:0001726,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005543,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005794,GO:0005933,GO:0005934,GO:0005935,GO:0005938,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0006996,GO:0007010,GO:0007163,GO:0008104,GO:0008150,GO:0008289,GO:0008360,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010511,GO:0010513,GO:0010562,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0019216,GO:0019220,GO:0019222,GO:0019899,GO:0022603,GO:0022604,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030010,GO:0030027,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030427,GO:0031090,GO:0031252,GO:0031267,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0032012,GO:0032014,GO:0032153,GO:0032940,GO:0033036,GO:0033554,GO:0034613,GO:0034976,GO:0035091,GO:0040008,GO:0042886,GO:0042995,GO:0043087,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045834,GO:0045937,GO:0046578,GO:0046579,GO:0046847,GO:0046889,GO:0046890,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051056,GO:0051057,GO:0051128,GO:0051174,GO:0051179,GO:0051234,GO:0051285,GO:0051286,GO:0051336,GO:0051523,GO:0051641,GO:0051649,GO:0051666,GO:0051716,GO:0061171,GO:0061389,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0071071,GO:0071073,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0098588,GO:0098772,GO:0098791,GO:0099568,GO:0099738,GO:0120025,GO:0120031,GO:0120036,GO:1901981,GO:1902531,GO:1902533,GO:1903725,GO:1903727
Exons3
Evalue1.18e-05
EggNOG OGsCOG5307@1|root,KOG1729@1|root,KOG2127@1|root,KOG0929@2759|Eukaryota,KOG1729@2759|Eukaryota,KOG2127@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size444
COG categoryL
BRITEko00000,ko00001,ko01000,ko01004,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.7557456-CDS-D-mesarthrocarpus_Contig10566:197..2801680789192.7557456-CDS-D-mesarthrocarpus_Contig10566:197..280Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10566 198..280 -
1680789192.7688105-CDS-D-mesarthrocarpus_Contig10566:1233..14441680789192.7688105-CDS-D-mesarthrocarpus_Contig10566:1233..1444Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10566 1234..1444 -
1680789192.7782886-CDS-D-mesarthrocarpus_Contig10566:2089..22391680789192.7782886-CDS-D-mesarthrocarpus_Contig10566:2089..2239Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10566 2090..2239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10566.1.1prot_D-mesarthrocarpus_Contig10566.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10566 198..2239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10566.1.1

>prot_D-mesarthrocarpus_Contig10566.1.1 ID=prot_D-mesarthrocarpus_Contig10566.1.1|Name=mRNA_D-mesarthrocarpus_Contig10566.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=148bp
SDVVGGGSTSGVAGSAGGDGGSVGGSGPAHSPAHSPALAAAPVLASSDAK
ATTYKCKERERTALRLTALKSVAQVMKGLMDASGHGHLIARDQRTRDISL
KGTGVWEDDEGSGGDEEGESAALHQPEGLVEPKVEHHPNSNLKGLDNG
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mRNA from alignment at D-mesarthrocarpus_Contig10566:198..2239-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10566.1.1 ID=mRNA_D-mesarthrocarpus_Contig10566.1.1|Name=mRNA_D-mesarthrocarpus_Contig10566.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2042bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10566:198..2239- (Discosporangium mesarthrocarpum MT17_79)
AGCGACGTGGTTGGAGGAGGGAGCACCTCAGGTGTGGCAGGGTCTGCTGG
TGGGGATGGGGGCTCGGTAGGAGGGTCTGGCCCTGCCCATTCCCCGGCTC
ATTCCCCAGCCCTGGCTGCGGCCCCCGTGCTGGCATCAAGTGACGCAAAG
GTACAGCAGATCCATTTTTTCTCCTTGGTTGGGCAGAGGGTGGATGGAAG
GTTAGCTTTGATGGGGGGAGGGAGAGTGGAAGGGAGAGGGGGGGTCTGTG
AGTGATCAACTAGTCCTGTATGTGGTTGGGTTTGGCACCCACTGTTGATG
AACAACTAAAAAAACAATATGGCAGAACTTCCTGACGCCACCAGGTTTTC
TGTCAAGGAAAGCACCCAGGATGTGGTGGGACAGGGGGGATTGGGGGGTT
GTTGTCCACCTCAGTTCCTGTGGTGGACGGGGGGAAAGTACCAAGTGCGG
GTTGGTCACCTGGACCATGTCATGCCAGCACCCGAGTTCTTTTTCAAGCA
AAATCCCAACCGTAACCCTAACCCTAAACCAAACCACACCACTATTGAAC
CTGCAGAAAAAAATATAGAGGCAAAAAAGAGCGCTGTCCTCACCCCTTAG
ACCTCACTTTCAACAACATGACTCACCCGCTGCAGAAGATAACCATATTC
TGGAGTGATTGTTAGGCAGCCAAGAGTACACTTCTTATATATGAGCCATA
GAAGACACTCCACGCCACAGCAACCCTGCACCCATACCCCCGCCCCTCCC
TCTCCTCCCTCTCCTCCCTCTCTCTCTCCCTCCCTCCACCTCAAGGCCAC
GACCTACAAGTGCAAGGAGAGGGAGCGGACGGCCCTCCGCCTCACAGCTC
TTAAGTCTGTTGCCCAGGTGATGAAGGGCCTCATGGATGCCTCTGGGCAC
GGGCACCTAATCGCTCGGGACCAGCGGACCAGGGACATCTCCCTGAAGGG
GACGGGGGTGTGGGAGGATGATGAGGGGAGCGGCGGGGATGAGGAGGGAG
AATCCGGTGAGGGTGCCGGGGTGGGAGGGAGGATAGTAGACAGGGTCTGC
TGCTTGGGGCCGAGATTCCTTTGTGCCTCTTTGACCCGCCACTTTGTTTT
TGCTCTTGTTTTTATCTAGTACCTGGAAGCATGTTGAACTGTTTACAGCA
ATGTATCAGTCGAAGTGGACCTGTATGCAATGTGTGAAGATACGTAATGT
GTGAAGATACGCAATGTGTGAAGATATGTAATGTGTGAAGATACGTAATG
TGTGAGGATACGTAATGTGTGAGGATATGCAATGTGTGAAGATACGTAAT
GCATTTCTTCTACTGGTACGCAGCATTTGACCTGGTGCACATGATTGCGC
CGGTTATATGGCTGCTCACCACTTAGCATATATGAAGGTTTGGGTTAGGG
TTAGGGTTAGGGTCAATCTGTAATCTCACCCCCTTCGCATACATGTAGAG
TCATGCCGCTTGTGGTGCAGGTAACCAGGGGAGCAGGGCCGGGTGTCACT
CAGGTTGTGCCTTTAATTTCGCTCTTTTGTTGGGGTAAGGGGGGGAGGGG
GGCTTGTTCACTTGCAATAACAACGTATGGTGGGGGCATGAGCATGACGG
AGGAAAGAAATCCTGGAGTGACCAGTCGTGGGCTAACCATATCATCCGAA
GGAATTTTCATCAAGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAG
GTCACATGTGTCAATGTACTGGTTTGGTCAGAGCTCTAAGGGTGTGAGGT
TGGACCAATAACTTCACCCAAGCAAGCCGCCCCTTCACATGTCTATGTTT
TGTGGCCTGCTGCCATTCATTCTCAACCCTTTCTCCTTTCTCCTTTTTCC
AGCTTCAAAAGTGTTTTTTGTGTGTAACTTGACAAAAAAGCAAAACAAAA
CAAAACAAACTTCAAGAAATAAAAAAGAAACAAGACGGCAACAAACATGC
TTTTTGCAGCTGCATTACACCAGCCCGAGGGGTTGGTGGAGCCCAAGGTC
GAGCACCACCCCAACAGCAACCTCAAGGGCCTCGATAATGGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10566:198..2239-

>mRNA_D-mesarthrocarpus_Contig10566.1.1 ID=mRNA_D-mesarthrocarpus_Contig10566.1.1|Name=mRNA_D-mesarthrocarpus_Contig10566.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=444bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10566:198..2239- (Discosporangium mesarthrocarpum MT17_79)
AGCGACGTGGTTGGAGGAGGGAGCACCTCAGGTGTGGCAGGGTCTGCTGG
TGGGGATGGGGGCTCGGTAGGAGGGTCTGGCCCTGCCCATTCCCCGGCTC
ATTCCCCAGCCCTGGCTGCGGCCCCCGTGCTGGCATCAAGTGACGCAAAG
GCCACGACCTACAAGTGCAAGGAGAGGGAGCGGACGGCCCTCCGCCTCAC
AGCTCTTAAGTCTGTTGCCCAGGTGATGAAGGGCCTCATGGATGCCTCTG
GGCACGGGCACCTAATCGCTCGGGACCAGCGGACCAGGGACATCTCCCTG
AAGGGGACGGGGGTGTGGGAGGATGATGAGGGGAGCGGCGGGGATGAGGA
GGGAGAATCCGCTGCATTACACCAGCCCGAGGGGTTGGTGGAGCCCAAGG
TCGAGCACCACCCCAACAGCAACCTCAAGGGCCTCGATAATGGC
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