mRNA_D-mesarthrocarpus_Contig10564.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10564.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10564.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2E1M308_9GAMM (CopC domain-containing protein n=5 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A2E1M308_9GAMM)

HSP 1 Score: 147 bits (371), Expect = 1.480e-43
Identity = 69/111 (62.16%), Postives = 86/111 (77.48%), Query Frame = 1
Query:    1 LVLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFSY 333
            L L+ F L  C+S    +PLLRAEP + ++LNRAPRTLRL+Y +LPDV +SSLRL+GP GE  LRGLHTMAADDLMIEI+DPVTPG+Y V W+T V  D  ++ GS++F Y
Sbjct:   10 LALIIFTLIGCVSNSGYTPLLRAEPEVGATLNRAPRTLRLFYAALPDVERSSLRLIGPNGEHQLRGLHTMAADDLMIEIMDPVTPGEYVVEWSTAVEGDPTVYSGSFNFRY 120          
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2E1ZKL3_9GAMM (CopC domain-containing protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E1ZKL3_9GAMM)

HSP 1 Score: 146 bits (369), Expect = 2.890e-43
Identity = 71/109 (65.14%), Postives = 88/109 (80.73%), Query Frame = 1
Query:    4 VLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFS 330
            +L+S +LF+C+S +  SPLLRAEP  NS L RAPRTLRL+YD+LPDV+QSSL+LVGP GE  LRGLHTMAADDLMIEI+DPVT G Y+V W  VV +D  ++ G ++FS
Sbjct:   11 LLLSTMLFACISERNYSPLLRAEPERNSELTRAPRTLRLFYDALPDVAQSSLKLVGPSGEHELRGLHTMAADDLMIEIMDPVTTGDYSVEWRAVVGDDPTVYSGHFNFS 119          
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A7C7XP31_9GAMM (CopC domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C7XP31_9GAMM)

HSP 1 Score: 144 bits (363), Expect = 2.370e-42
Identity = 66/109 (60.55%), Postives = 87/109 (79.82%), Query Frame = 1
Query:    4 VLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFS 330
            +L+  L  SC S    +PLL+AEP I S++ R PRTLRLYYD+LPDV +S++ L+GP GE +LRGLHTMA+DDLM+EI+DP+TPGQYTV WTT+V +D  +H GS++FS
Sbjct:   13 ILLLMLFNSCASNSAYTPLLKAEPEIGSAVTRVPRTLRLYYDALPDVERSAVTLIGPTGEHTLRGLHTMASDDLMMEIMDPLTPGQYTVEWTTIVGDDPMVHSGSFNFS 121          
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2D5IEG6_9GAMM (CopC domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D5IEG6_9GAMM)

HSP 1 Score: 143 bits (361), Expect = 4.920e-42
Identity = 69/111 (62.16%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    1 LVLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFSY 333
            L L+ F    C S    +PLLRAEP I ++L RAPRTLRL+Y +LPDV +SSLRLVGP GE  LRGLHTMAADDLMIEI+DPVTPG+Y V W+T V +D  ++ GS++F Y
Sbjct:   10 LALIXFAXVGCASDSXYTPLLRAEPEIGATLXRAPRTLRLFYAALPDVERSSLRLVGPNGEHQLRGLHTMAADDLMIEIMDPVTPGEYVVEWSTAVGDDPTVYSGSFNFHY 120          
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2E9JFF1_9GAMM (CopC domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E9JFF1_9GAMM)

HSP 1 Score: 140 bits (354), Expect = 5.540e-41
Identity = 66/110 (60.00%), Postives = 86/110 (78.18%), Query Frame = 1
Query:    1 LVLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFS 330
            ++L    L +C S+   +PLLRAEPA+ + L RAPRT+RLY+++LPDV+QSSL+L+GP GE  LRG+H MA+DDLMIEI+DPVT GQYT+ W TVV  D  IH GS++FS
Sbjct:   10 ILLACLQLSACASSSAYAPLLRAEPALGAKLIRAPRTIRLYFNALPDVAQSSLKLIGPSGEHQLRGMHIMASDDLMIEIIDPVTTGQYTIEWVTVVGEDPSIHAGSFNFS 119          
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2D8N7D7_9GAMM (CopC domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A2D8N7D7_9GAMM)

HSP 1 Score: 137 bits (345), Expect = 1.300e-39
Identity = 69/109 (63.30%), Postives = 83/109 (76.15%), Query Frame = 1
Query:    4 VLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFS 330
            VL+   L  C++    SPLLRAEP I S LNRAPRTLRLY+DSLP+VSQSSLRLVGP GE  LRGLHTMA +DLMIEI++PVT G+Y + W TVV ND   + G ++F+
Sbjct:   11 VLLCSQLIGCVTNGAYSPLLRAEPEIGSELNRAPRTLRLYFDSLPNVSQSSLRLVGPNGEHQLRGLHTMADNDLMIEIMEPVTIGEYQLEWVTVVENDPSTYSGVFNFT 119          
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2D8AII0_9GAMM (Copper resistance protein CopC n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D8AII0_9GAMM)

HSP 1 Score: 136 bits (342), Expect = 4.870e-39
Identity = 65/110 (59.09%), Postives = 85/110 (77.27%), Query Frame = 1
Query:    1 LVLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFS 330
            L++ +  L +C S    SP+L +EP + + L RAPRTLRLY++ LPDV +S+LRLVGP GE  LRG+HTMAADDLMIEILDP+TPG YTV WTTV+A+D  ++ G +DF+
Sbjct:   18 LLVTTATLAACGSAISHSPMLDSEPEVGAVLTRAPRTLRLYFEDLPDVDRSALRLVGPNGEHQLRGMHTMAADDLMIEILDPLTPGDYTVEWTTVIADDLTVYSGKFDFT 127          
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A3C0P7J7_9GAMM (CopC domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3C0P7J7_9GAMM)

HSP 1 Score: 135 bits (339), Expect = 1.310e-38
Identity = 64/104 (61.54%), Postives = 81/104 (77.88%), Query Frame = 1
Query:   25 FSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFSYA 336
            ++C S+   +PL RAEPAI + L RAPR +RLY+++LPDV+QSSL L+GP GE  LRG+HTMA+DDLMIEI+DPVT GQYTV W TVV  D   + GS++FS A
Sbjct:   25 YACASSTVYTPLRRAEPAIGAELTRAPRIIRLYFNALPDVAQSSLILIGPSGEHQLRGMHTMASDDLMIEIMDPVTTGQYTVEWVTVVGEDPTTYAGSFNFSVA 128          
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2E4YB53_9GAMM (CopC domain-containing protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E4YB53_9GAMM)

HSP 1 Score: 134 bits (338), Expect = 1.460e-38
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    1 LVLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFS 330
            L+LV+    +C S     P+L +EP   + L RAPRTLRL++  LPDV +S LRL+GP GE  LRGLHTMAADDLMIEILDP+TPG YTV WTTV+ ND  IH G +DF+
Sbjct:   10 LMLVATAASACGSAVSHLPMLNSEPKAGALLTRAPRTLRLFFAGLPDVDRSVLRLIGPNGEYRLRGLHTMAADDLMIEILDPLTPGSYTVEWTTVITNDTTIHAGKFDFT 119          
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2E1ZA73_9GAMM (CopC domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A2E1ZA73_9GAMM)

HSP 1 Score: 134 bits (338), Expect = 1.600e-38
Identity = 66/103 (64.08%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   22 LFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFS 330
            L SC +    SPLLRAEP   S L RAPRTLRLY+D LPDVSQSSLRLVGP GE  LRGLHTM+ +DLMIEI+DPVT G+Y V W T V  D  ++ G+++FS
Sbjct:   17 LISCATNSVYSPLLRAEPEXGSELXRAPRTLRLYFDELPDVSQSSLRLVGPNGEHQLRGLHTMSENDLMIEIIDPVTRGEYRVEWVTAVGADPGVYSGTFNFS 119          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E1M308_9GAMM1.480e-4362.16CopC domain-containing protein n=5 Tax=unclassifie... [more]
A0A2E1ZKL3_9GAMM2.890e-4365.14CopC domain-containing protein n=2 Tax=Gammaproteo... [more]
A0A7C7XP31_9GAMM2.370e-4260.55CopC domain-containing protein n=1 Tax=Gammaproteo... [more]
A0A2D5IEG6_9GAMM4.920e-4262.16CopC domain-containing protein n=1 Tax=Gammaproteo... [more]
A0A2E9JFF1_9GAMM5.540e-4160.00CopC domain-containing protein n=1 Tax=Gammaproteo... [more]
A0A2D8N7D7_9GAMM1.300e-3963.30CopC domain-containing protein n=5 Tax=root TaxID=... [more]
A0A2D8AII0_9GAMM4.870e-3959.09Copper resistance protein CopC n=1 Tax=Gammaproteo... [more]
A0A3C0P7J7_9GAMM1.310e-3861.54CopC domain-containing protein n=1 Tax=Gammaproteo... [more]
A0A2E4YB53_9GAMM1.460e-3860.00CopC domain-containing protein n=2 Tax=Gammaproteo... [more]
A0A2E1ZA73_9GAMM1.600e-3864.08CopC domain-containing protein n=3 Tax=root TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10564contigD-mesarthrocarpus_Contig10564:835..1182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog935261.JAGL01000035_gene3838
PFAMsCopC
Model size348
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07156
KEGG TC9.B.62.2
Hectar predicted targeting categorysignal peptide
Exons1
Evalue9.9e-07
EggNOG OGsCOG2372@1|root,COG2372@2|Bacteria,1N8SS@1224|Proteobacteria,2UFW5@28211|Alphaproteobacteria,43QNK@69277|Phyllobacteriaceae
DescriptionCopC domain
Cds size348
COG categoryS
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.6298535-CDS-D-mesarthrocarpus_Contig10564:834..11821680789192.6298535-CDS-D-mesarthrocarpus_Contig10564:834..1182Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10564 835..1182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10564.1.1prot_D-mesarthrocarpus_Contig10564.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10564 835..1182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10564.1.1

>prot_D-mesarthrocarpus_Contig10564.1.1 ID=prot_D-mesarthrocarpus_Contig10564.1.1|Name=mRNA_D-mesarthrocarpus_Contig10564.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=116bp
LVLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQ
SSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDN
EIHQGSYDFSYAPDS*
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mRNA from alignment at D-mesarthrocarpus_Contig10564:835..1182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10564.1.1 ID=mRNA_D-mesarthrocarpus_Contig10564.1.1|Name=mRNA_D-mesarthrocarpus_Contig10564.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=348bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10564:835..1182- (Discosporangium mesarthrocarpum MT17_79)
CTGGTACTTGTGTCCTTTTTACTTTTTTCCTGCCTGAGCACTCAACCAAT ATCGCCATTGCTTCGTGCAGAGCCGGCAATTAATTCTTCCCTGAACCGTG CGCCGCGGACACTTCGACTTTATTACGATTCTTTACCTGATGTTTCCCAA AGTAGTTTGCGACTGGTGGGCCCGGAAGGTGAGCTGTCGTTACGAGGGCT GCATACCATGGCAGCGGATGACCTTATGATTGAGATTCTGGATCCGGTGA CACCTGGCCAATACACGGTGTACTGGACGACCGTTGTCGCAAATGACAAT GAGATACACCAAGGCAGCTATGACTTTAGCTACGCGCCCGATTCATAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10564:835..1182-

>mRNA_D-mesarthrocarpus_Contig10564.1.1 ID=mRNA_D-mesarthrocarpus_Contig10564.1.1|Name=mRNA_D-mesarthrocarpus_Contig10564.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=348bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10564:835..1182- (Discosporangium mesarthrocarpum MT17_79)
CTGGTACTTGTGTCCTTTTTACTTTTTTCCTGCCTGAGCACTCAACCAAT
ATCGCCATTGCTTCGTGCAGAGCCGGCAATTAATTCTTCCCTGAACCGTG
CGCCGCGGACACTTCGACTTTATTACGATTCTTTACCTGATGTTTCCCAA
AGTAGTTTGCGACTGGTGGGCCCGGAAGGTGAGCTGTCGTTACGAGGGCT
GCATACCATGGCAGCGGATGACCTTATGATTGAGATTCTGGATCCGGTGA
CACCTGGCCAATACACGGTGTACTGGACGACCGTTGTCGCAAATGACAAT
GAGATACACCAAGGCAGCTATGACTTTAGCTACGCGCCCGATTCATAG
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