mRNA_D-mesarthrocarpus_Contig10564.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
|
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2E1M308_9GAMM (CopC domain-containing protein n=5 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A2E1M308_9GAMM) HSP 1 Score: 147 bits (371), Expect = 1.480e-43 Identity = 69/111 (62.16%), Postives = 86/111 (77.48%), Query Frame = 1
Query: 1 LVLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFSY 333
L L+ F L C+S +PLLRAEP + ++LNRAPRTLRL+Y +LPDV +SSLRL+GP GE LRGLHTMAADDLMIEI+DPVTPG+Y V W+T V D ++ GS++F Y
Sbjct: 10 LALIIFTLIGCVSNSGYTPLLRAEPEVGATLNRAPRTLRLFYAALPDVERSSLRLIGPNGEHQLRGLHTMAADDLMIEIMDPVTPGEYVVEWSTAVEGDPTVYSGSFNFRY 120
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2E1ZKL3_9GAMM (CopC domain-containing protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E1ZKL3_9GAMM) HSP 1 Score: 146 bits (369), Expect = 2.890e-43 Identity = 71/109 (65.14%), Postives = 88/109 (80.73%), Query Frame = 1
Query: 4 VLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFS 330
+L+S +LF+C+S + SPLLRAEP NS L RAPRTLRL+YD+LPDV+QSSL+LVGP GE LRGLHTMAADDLMIEI+DPVT G Y+V W VV +D ++ G ++FS
Sbjct: 11 LLLSTMLFACISERNYSPLLRAEPERNSELTRAPRTLRLFYDALPDVAQSSLKLVGPSGEHELRGLHTMAADDLMIEIMDPVTTGDYSVEWRAVVGDDPTVYSGHFNFS 119
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A7C7XP31_9GAMM (CopC domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C7XP31_9GAMM) HSP 1 Score: 144 bits (363), Expect = 2.370e-42 Identity = 66/109 (60.55%), Postives = 87/109 (79.82%), Query Frame = 1
Query: 4 VLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFS 330
+L+ L SC S +PLL+AEP I S++ R PRTLRLYYD+LPDV +S++ L+GP GE +LRGLHTMA+DDLM+EI+DP+TPGQYTV WTT+V +D +H GS++FS
Sbjct: 13 ILLLMLFNSCASNSAYTPLLKAEPEIGSAVTRVPRTLRLYYDALPDVERSAVTLIGPTGEHTLRGLHTMASDDLMMEIMDPLTPGQYTVEWTTIVGDDPMVHSGSFNFS 121
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2D5IEG6_9GAMM (CopC domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D5IEG6_9GAMM) HSP 1 Score: 143 bits (361), Expect = 4.920e-42 Identity = 69/111 (62.16%), Postives = 84/111 (75.68%), Query Frame = 1
Query: 1 LVLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFSY 333
L L+ F C S +PLLRAEP I ++L RAPRTLRL+Y +LPDV +SSLRLVGP GE LRGLHTMAADDLMIEI+DPVTPG+Y V W+T V +D ++ GS++F Y
Sbjct: 10 LALIXFAXVGCASDSXYTPLLRAEPEIGATLXRAPRTLRLFYAALPDVERSSLRLVGPNGEHQLRGLHTMAADDLMIEIMDPVTPGEYVVEWSTAVGDDPTVYSGSFNFHY 120
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2E9JFF1_9GAMM (CopC domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E9JFF1_9GAMM) HSP 1 Score: 140 bits (354), Expect = 5.540e-41 Identity = 66/110 (60.00%), Postives = 86/110 (78.18%), Query Frame = 1
Query: 1 LVLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFS 330
++L L +C S+ +PLLRAEPA+ + L RAPRT+RLY+++LPDV+QSSL+L+GP GE LRG+H MA+DDLMIEI+DPVT GQYT+ W TVV D IH GS++FS
Sbjct: 10 ILLACLQLSACASSSAYAPLLRAEPALGAKLIRAPRTIRLYFNALPDVAQSSLKLIGPSGEHQLRGMHIMASDDLMIEIIDPVTTGQYTIEWVTVVGEDPSIHAGSFNFS 119
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2D8N7D7_9GAMM (CopC domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A2D8N7D7_9GAMM) HSP 1 Score: 137 bits (345), Expect = 1.300e-39 Identity = 69/109 (63.30%), Postives = 83/109 (76.15%), Query Frame = 1
Query: 4 VLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFS 330
VL+ L C++ SPLLRAEP I S LNRAPRTLRLY+DSLP+VSQSSLRLVGP GE LRGLHTMA +DLMIEI++PVT G+Y + W TVV ND + G ++F+
Sbjct: 11 VLLCSQLIGCVTNGAYSPLLRAEPEIGSELNRAPRTLRLYFDSLPNVSQSSLRLVGPNGEHQLRGLHTMADNDLMIEIMEPVTIGEYQLEWVTVVENDPSTYSGVFNFT 119
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2D8AII0_9GAMM (Copper resistance protein CopC n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D8AII0_9GAMM) HSP 1 Score: 136 bits (342), Expect = 4.870e-39 Identity = 65/110 (59.09%), Postives = 85/110 (77.27%), Query Frame = 1
Query: 1 LVLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFS 330
L++ + L +C S SP+L +EP + + L RAPRTLRLY++ LPDV +S+LRLVGP GE LRG+HTMAADDLMIEILDP+TPG YTV WTTV+A+D ++ G +DF+
Sbjct: 18 LLVTTATLAACGSAISHSPMLDSEPEVGAVLTRAPRTLRLYFEDLPDVDRSALRLVGPNGEHQLRGMHTMAADDLMIEILDPLTPGDYTVEWTTVIADDLTVYSGKFDFT 127
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A3C0P7J7_9GAMM (CopC domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3C0P7J7_9GAMM) HSP 1 Score: 135 bits (339), Expect = 1.310e-38 Identity = 64/104 (61.54%), Postives = 81/104 (77.88%), Query Frame = 1
Query: 25 FSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFSYA 336
++C S+ +PL RAEPAI + L RAPR +RLY+++LPDV+QSSL L+GP GE LRG+HTMA+DDLMIEI+DPVT GQYTV W TVV D + GS++FS A
Sbjct: 25 YACASSTVYTPLRRAEPAIGAELTRAPRIIRLYFNALPDVAQSSLILIGPSGEHQLRGMHTMASDDLMIEIMDPVTTGQYTVEWVTVVGEDPTTYAGSFNFSVA 128
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2E4YB53_9GAMM (CopC domain-containing protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E4YB53_9GAMM) HSP 1 Score: 134 bits (338), Expect = 1.460e-38 Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 1
Query: 1 LVLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFS 330
L+LV+ +C S P+L +EP + L RAPRTLRL++ LPDV +S LRL+GP GE LRGLHTMAADDLMIEILDP+TPG YTV WTTV+ ND IH G +DF+
Sbjct: 10 LMLVATAASACGSAVSHLPMLNSEPKAGALLTRAPRTLRLFFAGLPDVDRSVLRLIGPNGEYRLRGLHTMAADDLMIEILDPLTPGSYTVEWTTVITNDTTIHAGKFDFT 119
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Match: A0A2E1ZA73_9GAMM (CopC domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A2E1ZA73_9GAMM) HSP 1 Score: 134 bits (338), Expect = 1.600e-38 Identity = 66/103 (64.08%), Postives = 77/103 (74.76%), Query Frame = 1
Query: 22 LFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQSSLRLVGPEGELSLRGLHTMAADDLMIEILDPVTPGQYTVYWTTVVANDNEIHQGSYDFS 330
L SC + SPLLRAEP S L RAPRTLRLY+D LPDVSQSSLRLVGP GE LRGLHTM+ +DLMIEI+DPVT G+Y V W T V D ++ G+++FS
Sbjct: 17 LISCATNSVYSPLLRAEPEXGSELXRAPRTLRLYFDELPDVSQSSLRLVGPNGEHQLRGLHTMSENDLMIEIIDPVTRGEYRVEWVTAVGADPGVYSGTFNFS 119 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10564.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10564.1.1 >prot_D-mesarthrocarpus_Contig10564.1.1 ID=prot_D-mesarthrocarpus_Contig10564.1.1|Name=mRNA_D-mesarthrocarpus_Contig10564.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=116bp LVLVSFLLFSCLSTQPISPLLRAEPAINSSLNRAPRTLRLYYDSLPDVSQback to top mRNA from alignment at D-mesarthrocarpus_Contig10564:835..1182- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10564.1.1 ID=mRNA_D-mesarthrocarpus_Contig10564.1.1|Name=mRNA_D-mesarthrocarpus_Contig10564.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=348bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10564:835..1182- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10564:835..1182- >mRNA_D-mesarthrocarpus_Contig10564.1.1 ID=mRNA_D-mesarthrocarpus_Contig10564.1.1|Name=mRNA_D-mesarthrocarpus_Contig10564.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=348bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10564:835..1182- (Discosporangium mesarthrocarpum MT17_79)back to top |