mRNA_D-mesarthrocarpus_Contig10561.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10561.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10561.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10561.2.1 vs. uniprot
Match: D7FY73_ECTSI (Topoisomerase 6 subunit B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY73_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 5.190e-12
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 PRTQVDVNRPLSDRFPTSWSVHRGHHFFLWTKVL 102
            P  QV+VNR LSDRFPTSWSVHRGHHFFLW K+L
Sbjct:  507 PYRQVEVNRSLSDRFPTSWSVHRGHHFFLWHKIL 540
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BLAST of mRNA_D-mesarthrocarpus_Contig10561.2.1 vs. uniprot
Match: A0A6H5KB73_9PHAE (DOT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB73_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.190e-12
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 PRTQVDVNRPLSDRFPTSWSVHRGHHFFLWTKVL 102
            P  QV+VNR LSDRFPTSWSVHRGHHFFLW K+L
Sbjct:  496 PYRQVEVNRSLSDRFPTSWSVHRGHHFFLWHKIL 529
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BLAST of mRNA_D-mesarthrocarpus_Contig10561.2.1 vs. uniprot
Match: A0A4D9D5D5_9STRA (C2H2-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5D5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.400e-8
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 PRTQVDVNRPLSDRFPTSWSVHRGHHFFLWTKVL 102
            P  Q+++NR +SDR+ TSWSV+RGHHF+LW KVL
Sbjct:  430 PFRQLEINRSVSDRYATSWSVNRGHHFYLWMKVL 463
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BLAST of mRNA_D-mesarthrocarpus_Contig10561.2.1 vs. uniprot
Match: A0A7S4DH00_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DH00_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 2.420e-8
Identity = 24/32 (75.00%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    1 PRTQVDVNRPLSDRFPTSWSVHRGHHFFLWTK 96
            P  Q+  N PLSDRFPTSWSV RGHHFFLW K
Sbjct:  392 PFRQLPGNLPLSDRFPTSWSVQRGHHFFLWAK 423
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BLAST of mRNA_D-mesarthrocarpus_Contig10561.2.1 vs. uniprot
Match: A0A8J2WX67_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WX67_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.480e-8
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 PRTQVDVNRPLSDRFPTSWSVHRGHHFFLWTKVL 102
            P  Q++ NR  +DR+PTSWSV RGHH FLW KVL
Sbjct:  363 PFRQLEANRSFADRYPTSWSVQRGHHLFLWVKVL 396
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BLAST of mRNA_D-mesarthrocarpus_Contig10561.2.1 vs. uniprot
Match: A0A7S3ZW16_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZW16_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.520e-8
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 PRTQVDVNRPLSDRFPTSWSVHRGHHFFLWTKVL 102
            P  Q++ NR  +DR+PTSWSV RGHH FLW KVL
Sbjct:  343 PFRQLEANRSFADRYPTSWSVQRGHHLFLWVKVL 376
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BLAST of mRNA_D-mesarthrocarpus_Contig10561.2.1 vs. uniprot
Match: A0A7S3NGR3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGR3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.160e-8
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 PRTQVDVNRPLSDRFPTSWSVHRGHHFFLWTKVL 102
            P  Q++ NR  +DR+PTSWSV+RGHH FLW KVL
Sbjct:  362 PFRQLESNRSFADRYPTSWSVNRGHHLFLWVKVL 395
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BLAST of mRNA_D-mesarthrocarpus_Contig10561.2.1 vs. uniprot
Match: A0A7S0SP71_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SP71_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 8.360e-8
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   10 QVDVNRPLSDRFPTSWSVHRGHHFFLWTK 96
            Q++ N+ LSDRFPTSWSV RGHHFFLW K
Sbjct:  432 QLECNKYLSDRFPTSWSVQRGHHFFLWIK 460
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BLAST of mRNA_D-mesarthrocarpus_Contig10561.2.1 vs. uniprot
Match: A0A7S2SB25_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SB25_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.140e-7
Identity = 20/32 (62.50%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 PRTQVDVNRPLSDRFPTSWSVHRGHHFFLWTK 96
            P +Q+++N+   DRFPTSWSV RGHHF++WTK
Sbjct:  479 PFSQLEINKSSMDRFPTSWSVQRGHHFYVWTK 510
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BLAST of mRNA_D-mesarthrocarpus_Contig10561.2.1 vs. uniprot
Match: A0A6U4GL22_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GL22_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.400e-6
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 PRTQVDVNRPLSDRFPTSWSVHRGHHFFLWTKV 99
            P  Q   NR L+DR+PTSWSV RGHHF+LW +V
Sbjct:  380 PFVQHRENRDLTDRYPTSWSVSRGHHFYLWMRV 412
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10561.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FY73_ECTSI5.190e-1282.35Topoisomerase 6 subunit B n=1 Tax=Ectocarpus silic... [more]
A0A6H5KB73_9PHAE5.190e-1282.35DOT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A4D9D5D5_9STRA2.400e-864.71C2H2-type domain-containing protein n=2 Tax=Monodo... [more]
A0A7S4DH00_HETAK2.420e-875.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2WX67_9STRA4.480e-864.71Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3ZW16_9STRA4.520e-864.71Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NGR3_9STRA6.160e-864.71Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0SP71_9STRA8.360e-875.86Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S2SB25_9STRA1.140e-762.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U4GL22_9STRA1.400e-663.64Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10561contigD-mesarthrocarpus_Contig10561:3906..4007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FY73
PFAMsDOT1
Model size102
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.5e-13
EggNOG OGs2C39T@1|root,2STY5@2759|Eukaryota
Cds size102
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.5290592-CDS-D-mesarthrocarpus_Contig10561:3905..40071680789192.5290592-CDS-D-mesarthrocarpus_Contig10561:3905..4007Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10561 3906..4007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10561.2.1prot_D-mesarthrocarpus_Contig10561.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10561 3906..4007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10561.2.1

>prot_D-mesarthrocarpus_Contig10561.2.1 ID=prot_D-mesarthrocarpus_Contig10561.2.1|Name=mRNA_D-mesarthrocarpus_Contig10561.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=34bp
PRTQVDVNRPLSDRFPTSWSVHRGHHFFLWTKVL
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mRNA from alignment at D-mesarthrocarpus_Contig10561:3906..4007-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10561.2.1 ID=mRNA_D-mesarthrocarpus_Contig10561.2.1|Name=mRNA_D-mesarthrocarpus_Contig10561.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=102bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10561:3906..4007- (Discosporangium mesarthrocarpum MT17_79)
CCCCGCACACAGGTGGACGTCAACCGGCCCCTCTCGGACCGCTTTCCGAC
CTCATGGTCCGTTCACCGGGGGCACCACTTCTTCCTCTGGACAAAGGTCC
TC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10561:3906..4007-

>mRNA_D-mesarthrocarpus_Contig10561.2.1 ID=mRNA_D-mesarthrocarpus_Contig10561.2.1|Name=mRNA_D-mesarthrocarpus_Contig10561.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=102bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10561:3906..4007- (Discosporangium mesarthrocarpum MT17_79)
CCCCGCACACAGGTGGACGTCAACCGGCCCCTCTCGGACCGCTTTCCGAC
CTCATGGTCCGTTCACCGGGGGCACCACTTCTTCCTCTGGACAAAGGTCC
TC
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