mRNA_D-mesarthrocarpus_Contig10559.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10559.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10559.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10559.2.1 vs. uniprot
Match: D7G553_ECTSI (WD40 repeat-containing protein SMU1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G553_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.460e-11
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1
Query:    1 QGHQNTSSSFLRATLGGDEELVLGGSDDKKLYIWDRR 111
            +GHQNTSSSFLRATLG +E LV GGSDD K+Y+W RR
Sbjct:  355 KGHQNTSSSFLRATLGAEEGLVFGGSDDCKVYVWHRR 391          
BLAST of mRNA_D-mesarthrocarpus_Contig10559.2.1 vs. uniprot
Match: A0A5J4YQB2_PORPP (WD40 repeat-containing protein SMU1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQB2_PORPP)

HSP 1 Score: 58.9 bits (141), Expect = 4.420e-9
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    1 QGHQNTSSSFLRATLGGDEELVLGGSDDKKLYIWDRRS 114
            +GHQNTS +F+R T G DE+L+ GGS+D K+Y WDR +
Sbjct:  614 KGHQNTSKNFIRTTFGPDEQLIFGGSEDSKVYAWDRET 651          
BLAST of mRNA_D-mesarthrocarpus_Contig10559.2.1 vs. uniprot
Match: A0A835YTG5_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.290e-9
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 QGHQNTSSSFLRATLGGDEELVLGGSDDKKLYIWDRRS 114
            +GHQNTSSSFLRAT   +E L+LGGSD   L++WDR++
Sbjct:  453 RGHQNTSSSFLRATFAAEESLILGGSDCGALHVWDRKN 490          
BLAST of mRNA_D-mesarthrocarpus_Contig10559.2.1 vs. uniprot
Match: A9T1E6_PHYPA (WD40 repeat-containing protein SMU1 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9T1E6_PHYPA)

HSP 1 Score: 54.3 bits (129), Expect = 1.890e-7
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 QGHQNTSSSFLRATLGGDEELVLGGSDDKKLYIWD 105
            +GHQNTS +F+RA+ G DE LV+GGS+D  +YIWD
Sbjct:  543 KGHQNTSKNFVRASFGPDESLVVGGSEDGFVYIWD 577          
BLAST of mRNA_D-mesarthrocarpus_Contig10559.2.1 vs. uniprot
Match: A0A2K1JGK8_PHYPA (WD40 repeat-containing protein SMU1 n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JGK8_PHYPA)

HSP 1 Score: 54.3 bits (129), Expect = 1.890e-7
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 QGHQNTSSSFLRATLGGDEELVLGGSDDKKLYIWD 105
            +GHQNTS +F+RA+ G DE LV+GGS+D  +YIWD
Sbjct:  508 KGHQNTSKNFVRASFGPDESLVVGGSEDGFVYIWD 542          
BLAST of mRNA_D-mesarthrocarpus_Contig10559.2.1 vs. uniprot
Match: A0A7J7II20_9RHOD (WD40 repeat-containing protein SMU1 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7II20_9RHOD)

HSP 1 Score: 52.8 bits (125), Expect = 6.610e-7
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    1 QGHQNTSSSFLRATLGGDEELVLGGSDDKKLYIWDRRS 114
            +GHQNTS +F+RA+ G +E LV+GGS+D  +YIWD  S
Sbjct:  648 KGHQNTSKNFIRASFGPNELLVVGGSEDGYIYIWDVES 685          
BLAST of mRNA_D-mesarthrocarpus_Contig10559.2.1 vs. uniprot
Match: F0ZJF7_DICPU (WD40 repeat-containing protein SMU1 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZJF7_DICPU)

HSP 1 Score: 52.4 bits (124), Expect = 9.050e-7
Identity = 20/35 (57.14%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 QGHQNTSSSFLRATLGGDEELVLGGSDDKKLYIWD 105
            +GHQNTS +F+R++ G +E LV+GGS+D  +YIWD
Sbjct:  555 KGHQNTSKNFIRSSFGPNESLVVGGSEDGYIYIWD 589          
BLAST of mRNA_D-mesarthrocarpus_Contig10559.2.1 vs. uniprot
Match: M2WQF8_GALSU (WD40 repeat-containing protein SMU1 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WQF8_GALSU)

HSP 1 Score: 52.0 bits (123), Expect = 1.240e-6
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1
Query:    1 QGHQNTSSSFLRATLGGDEELVLGGSDDKKLYIWD 105
            +GHQNTS +F+R   G +EELV+GGS+D  +YIWD
Sbjct:  509 KGHQNTSKNFIRVGFGTNEELVVGGSEDGFVYIWD 543          
BLAST of mRNA_D-mesarthrocarpus_Contig10559.2.1 vs. uniprot
Match: A0A2V3IZD4_9FLOR (WD40 repeat-containing protein SMU1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZD4_9FLOR)

HSP 1 Score: 51.2 bits (121), Expect = 2.320e-6
Identity = 20/38 (52.63%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    1 QGHQNTSSSFLRATLGGDEELVLGGSDDKKLYIWDRRS 114
            +GHQNTS +F+R+  G  E++V+GGS+D ++YIWD  S
Sbjct:  502 KGHQNTSKNFVRSGFGPREDVVIGGSEDGRVYIWDVES 539          
BLAST of mRNA_D-mesarthrocarpus_Contig10559.2.1 vs. uniprot
Match: A0A1X6PEK1_PORUM (WD40 repeat-containing protein SMU1 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEK1_PORUM)

HSP 1 Score: 50.4 bits (119), Expect = 4.330e-6
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 1
Query:    7 HQNTSSSFLRATLGGDEELVLGGSDDKKLYIWD 105
            HQNTS +F+R+  G +E LV+GGS+D  LYIWD
Sbjct:  685 HQNTSKNFIRSAFGPNESLVIGGSEDGLLYIWD 717          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10559.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G553_ECTSI5.460e-1175.68WD40 repeat-containing protein SMU1 n=1 Tax=Ectoca... [more]
A0A5J4YQB2_PORPP4.420e-957.89WD40 repeat-containing protein SMU1 n=1 Tax=Porphy... [more]
A0A835YTG5_9STRA8.290e-963.16WD40 repeat-containing protein SMU1 n=1 Tax=Tribon... [more]
A9T1E6_PHYPA1.890e-762.86WD40 repeat-containing protein SMU1 n=2 Tax=Physco... [more]
A0A2K1JGK8_PHYPA1.890e-762.86WD40 repeat-containing protein SMU1 n=4 Tax=Physco... [more]
A0A7J7II20_9RHOD6.610e-757.89WD40 repeat-containing protein SMU1 n=1 Tax=Cyanid... [more]
F0ZJF7_DICPU9.050e-757.14WD40 repeat-containing protein SMU1 n=1 Tax=Dictyo... [more]
M2WQF8_GALSU1.240e-660.00WD40 repeat-containing protein SMU1 n=2 Tax=Galdie... [more]
A0A2V3IZD4_9FLOR2.320e-652.63WD40 repeat-containing protein SMU1 n=1 Tax=Gracil... [more]
A0A1X6PEK1_PORUM4.330e-660.61WD40 repeat-containing protein SMU1 n=1 Tax=Porphy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10559contigD-mesarthrocarpus_Contig10559:4134..4247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G553
PFAMsWD40
Model size114
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.95e-12
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
DescriptionWD repeat-containing protein
Cds size114
COG categoryB
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.305043-CDS-D-mesarthrocarpus_Contig10559:4133..42471680789192.305043-CDS-D-mesarthrocarpus_Contig10559:4133..4247Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10559 4134..4247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10559.2.1prot_D-mesarthrocarpus_Contig10559.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10559 4134..4247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10559.2.1

>prot_D-mesarthrocarpus_Contig10559.2.1 ID=prot_D-mesarthrocarpus_Contig10559.2.1|Name=mRNA_D-mesarthrocarpus_Contig10559.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=38bp
QGHQNTSSSFLRATLGGDEELVLGGSDDKKLYIWDRRS
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mRNA from alignment at D-mesarthrocarpus_Contig10559:4134..4247+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10559.2.1 ID=mRNA_D-mesarthrocarpus_Contig10559.2.1|Name=mRNA_D-mesarthrocarpus_Contig10559.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=114bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10559:4134..4247+ (Discosporangium mesarthrocarpum MT17_79)
CAGGGTCATCAGAATACAAGCAGCAGCTTTCTGCGGGCAACCCTTGGGGG TGACGAGGAGTTAGTCCTAGGCGGTAGTGATGACAAGAAGCTCTACATAT GGGACCGGAGGAGT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10559:4134..4247+

>mRNA_D-mesarthrocarpus_Contig10559.2.1 ID=mRNA_D-mesarthrocarpus_Contig10559.2.1|Name=mRNA_D-mesarthrocarpus_Contig10559.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=114bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10559:4134..4247+ (Discosporangium mesarthrocarpum MT17_79)
CAGGGTCATCAGAATACAAGCAGCAGCTTTCTGCGGGCAACCCTTGGGGG
TGACGAGGAGTTAGTCCTAGGCGGTAGTGATGACAAGAAGCTCTACATAT
GGGACCGGAGGAGT
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