mRNA_D-mesarthrocarpus_Contig10558.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10558.1.1 vs. uniprot
Match: A0A6H5KHN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN4_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 2.690e-13 Identity = 61/164 (37.20%), Postives = 83/164 (50.61%), Query Frame = 1
Query: 334 DIGAVVGDVGSYSCKIGFAGEDFPRAYFSSLVGRTAVGDTSDQLDAAMDIAVNG--SPAKAGNQKASGKVRE---------------------ERP----QGTQ--SPRPGRADRPGSVGAGVDTSNYEWHVDSLLSRTDMEMMPVVEAGQGECWSIGSGVVTH 738
D+GAVVGD GSYSCK+GFAGEDFPRAY +SL+GRT + + +L+A M AV+ SPAKAG ++ R RP QG Q +PR R G+ G +D + Y + DM+++P++E G W + V H
Sbjct: 40 DVGAVVGDGGSYSCKMGFAGEDFPRAYLTSLIGRTVDLEATRRLEAEMGAAVDSARSPAKAGGERGGATARRMWHPXXXPTGSPSGEARGPQFRRPCRGAQGNQKGAPRTERRRTGGTGGRFIDGTGY-----LMGGGADMDVLPLMEDGFVTDWDLIEKVWEH 198
BLAST of mRNA_D-mesarthrocarpus_Contig10558.1.1 vs. uniprot
Match: D8LHI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI9_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 1.290e-8 Identity = 25/30 (83.33%), Postives = 30/30 (100.00%), Query Frame = 1
Query: 331 DDIGAVVGDVGSYSCKIGFAGEDFPRAYFS 420
+D+GAV+GDVGSYSCK+GFAGEDFPRAYF+
Sbjct: 35 NDVGAVMGDVGSYSCKMGFAGEDFPRAYFT 64
BLAST of mRNA_D-mesarthrocarpus_Contig10558.1.1 vs. uniprot
Match: D8LHI8_ECTSI (Protein binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI8_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 2.150e-8 Identity = 54/145 (37.24%), Postives = 73/145 (50.34%), Query Frame = 1
Query: 379 IGFAGEDFPRAYFSSLVGRTAVGDTSDQLDAAMDIAVN--GSPAKAGNQKASG----KVREERPQGTQSPRPGRADR-----PGSVGA-------------GVDTSNYEWHVDSLLSR-TDMEMMPVVEAGQGECWSIGSGVVTH 738
+GFAGEDFPRAYF+SL+GRT + + +L+A MD AV+ GSPA+A +A G K P Q R G+ PG G G + Y WHVDSL+ DM+++P++E G W + V H
Sbjct: 1 MGFAGEDFPRAYFTSLIGRTVDLEATRRLEAEMDAAVDSAGSPARA---RAGGNXXXKAAPSPPANGQPQRGGKGAAASPAVPGGSGESEGGAANGEEKDEGDGRTVYRWHVDSLMGGGADMDVVPLMEDGFVTDWDLMEKVWEH 142
BLAST of mRNA_D-mesarthrocarpus_Contig10558.1.1 vs. uniprot
Match: A0A388M0T1_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388M0T1_CHABU) HSP 1 Score: 67.0 bits (162), Expect = 3.250e-8 Identity = 55/162 (33.95%), Postives = 77/162 (47.53%), Query Frame = 1
Query: 316 MYCGGDDIGAVVGDVGSYSCKIGFAGEDFPRAYFSSLVGRTAVGDTSDQLDAAMDIAVNGSPAKAGNQKASGKVREERPQGTQSPRPGRADRPGSVGAG-VDTSNYEWHVDSLLSRTD-MEMMPVVEAGQGECWSIGSGVVTHLFALNLVVSGEETAWVTSE 795
MY GGD++ A+V DVGS +CK G+AGED P+A F SLVG +D GS A GN EE+ G +PG G +N + +V++L R D ME++P V+ G W + G+ H F L+V E + +E
Sbjct: 183 MY-GGDEVSALVIDVGSNTCKAGYAGEDAPKAVFPSLVGVVEKSGAAD-----------GSAAALGNGDVEMGDAEEKRTGN---------KPGGDGNDKARKANRKLYVNALGFRRDFMEVVPTVKEGLVADWDLVEGLWEHAFRERLLVDPREHPMLLAE 323
BLAST of mRNA_D-mesarthrocarpus_Contig10558.1.1 vs. uniprot
Match: A0A388K3W8_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K3W8_CHABU) HSP 1 Score: 63.9 bits (154), Expect = 1.980e-7 Identity = 54/162 (33.33%), Postives = 76/162 (46.91%), Query Frame = 1
Query: 316 MYCGGDDIGAVVGDVGSYSCKIGFAGEDFPRAYFSSLVGRTAVGDTSDQLDAAMDIAVNGSPAKAGNQKASGKVREERPQGTQSPRPGRADRPGSVGAG-VDTSNYEWHVDSLLSRTD-MEMMPVVEAGQGECWSIGSGVVTHLFALNLVVSGEETAWVTSE 795
MY GGD++ A+V DVG +CK G+AGED P+A F SLVG +D GS A GN EE+ G +PG G +N + +V++L R D ME++P V+ G W + G+ H F L+V E + +E
Sbjct: 1 MY-GGDEVSALVIDVGWNTCKAGYAGEDAPKAVFPSLVGVIEKSGAAD-----------GSAAALGNGDVEMGDAEEKRTGN---------KPGGDGNDKARKANRKLYVNALGFRRDFMEVVPTVKEGLVADWDLVEGLWEHAFRERLLVDPREHPMLLAE 141
BLAST of mRNA_D-mesarthrocarpus_Contig10558.1.1 vs. uniprot
Match: A0A453LL36_AEGTS (Uncharacterized protein n=4 Tax=Poaceae TaxID=4479 RepID=A0A453LL36_AEGTS) HSP 1 Score: 62.0 bits (149), Expect = 6.070e-7 Identity = 44/168 (26.19%), Postives = 72/168 (42.86%), Query Frame = 1
Query: 310 PKMYCGGDDIGAVVGDVGSYSCKIGFAGEDFPRAYFSSLVGRTAVGDTSDQLDAAMDIAVNGSPAKAGNQKASGKVREERPQGTQSPRPGRADRPGSVGAGVDTSNYEWHVDSLLSRTDMEMMPVVEAGQGECWSIGSGVVTHLFALNLVVSGEETAWVTSEGRVWSA 813
P MY GGD++ A+V DVGSYSCK G+AG+D P++ F S+VG + +D+ P K + + P +P V + + R ME++ ++ G W + + H F L+++ EE + +E + SA
Sbjct: 8 PAMY-GGDEVSAIVIDVGSYSCKAGYAGDDTPKSVFPSVVGSIEQAEDTDEAK----------PEKEADSASD---------------PKNGSKPMDVDKAKTKRKFYVGQELEFRRDHMEVISPMKDGTVMDWDVVDNIWNHAFRRRLLINPEEHPMLIAEPSINSA 149
BLAST of mRNA_D-mesarthrocarpus_Contig10558.1.1 vs. uniprot
Match: A0A1Y1ILU8_KLENI (Actin-related protein 4-ARP4 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ILU8_KLENI) HSP 1 Score: 62.4 bits (150), Expect = 6.360e-7 Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 271 LATRGRATSGGPDPKMYCGGDDIGAVVGDVGSYSCKIGFAGEDFPRAYFSSLVGRTAVGDTSD 459
LA R G P MY GGD++ A+V DVGS++CK G+AGED P+A F S+VG G +D
Sbjct: 17 LAPRCVPGEGAPAASMY-GGDEVSAIVVDVGSHTCKAGYAGEDAPKAVFPSVVGAVPAGPAND 78
BLAST of mRNA_D-mesarthrocarpus_Contig10558.1.1 vs. uniprot
Match: UPI001D1A3E79 (actin-related protein 4-like isoform X2 n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=UPI001D1A3E79) HSP 1 Score: 59.7 bits (143), Expect = 1.140e-6 Identity = 43/166 (25.90%), Postives = 71/166 (42.77%), Query Frame = 1
Query: 316 MYCGGDDIGAVVGDVGSYSCKIGFAGEDFPRAYFSSLVGRTAVGDTSDQLDAAMDIAVNGSPAKAGNQKASGKVREERPQGTQSPRPGRADRPGSVGAGVDTSNYEWHVDSLLSRTDMEMMPVVEAGQGECWSIGSGVVTHLFALNLVVSGEETAWVTSEGRVWSA 813
MY GGD++ A+V DVGSYSCK G+AG+D P++ F S+VG + +D+ P K + + P +P V + + R ME++ ++ G W + + H F L+++ EE + +E + SA
Sbjct: 1 MY-GGDEVSAIVIDVGSYSCKAGYAGDDTPKSVFPSVVGSIEQAEDTDEAK----------PEKEADSASD---------------PKNGSKPMDVDKAKTKRKFYVGQELEFRRDHMEVISPMKDGTVTDWDVVDNIWNHAFRRRLLINPEEHPMLIAEPSINSA 140
BLAST of mRNA_D-mesarthrocarpus_Contig10558.1.1 vs. uniprot
Match: A0A446UJJ9_TRITD (Uncharacterized protein n=3 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446UJJ9_TRITD) HSP 1 Score: 59.7 bits (143), Expect = 1.550e-6 Identity = 43/166 (25.90%), Postives = 71/166 (42.77%), Query Frame = 1
Query: 316 MYCGGDDIGAVVGDVGSYSCKIGFAGEDFPRAYFSSLVGRTAVGDTSDQLDAAMDIAVNGSPAKAGNQKASGKVREERPQGTQSPRPGRADRPGSVGAGVDTSNYEWHVDSLLSRTDMEMMPVVEAGQGECWSIGSGVVTHLFALNLVVSGEETAWVTSEGRVWSA 813
MY GGD++ A+V DVGSYSCK G+AG+D P++ F S+VG + +D+ P K + + P +P V + + R ME++ ++ G W + + H F L+++ EE + +E + SA
Sbjct: 1 MY-GGDEVSAIVIDVGSYSCKAGYAGDDTPKSVFPSVVGSIEQAEDTDEAK----------PEKEADSASD---------------PKNGSKPMDVDKAKTKRKFYVGQELEFRRDHMEVISPMKDGTVTDWDVVDNIWNHAFRRRLLINPEEHPMLIAEPSINSA 140
BLAST of mRNA_D-mesarthrocarpus_Contig10558.1.1 vs. uniprot
Match: A0A1S3IIH2_LINUN (actin-like protein 6B n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IIH2_LINUN) HSP 1 Score: 60.8 bits (146), Expect = 1.840e-6 Identity = 44/140 (31.43%), Postives = 63/140 (45.00%), Query Frame = 1
Query: 325 GGDDIGAVVGDVGSYSCKIGFAGEDFPRAYFSSLVGRTAVGDTSDQLDAAMDIAVNGSPAKAGNQKASGKVREERPQGTQSPRPGRADRPGSVGAGVDTSNYEWHVDSLLSRTDMEMMPVVEAGQGECWSIGSGVVTHLF 744
GGD++GA+V D+GSYS + G+AGED P+A F S VG ++LDAAMD N +K +K +DT++ + R MEMM ++ G E W I V+ H +
Sbjct: 7 GGDEVGALVFDIGSYSFRAGYAGEDTPKAEFPSTVG------VCEELDAAMDTDENSQISKQSQKKYY----------------------------IDTNSI------CVPRKGMEMMSFLKEGMIEDWDIFEKVMDHTY 106 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10558.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10558.1.1 >prot_D-mesarthrocarpus_Contig10558.1.1 ID=prot_D-mesarthrocarpus_Contig10558.1.1|Name=mRNA_D-mesarthrocarpus_Contig10558.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=191bp MYCGGDDIGAVVGDVGSYSCKIGFAGEDFPRAYFSSLVGRTAVGDTSDQLback to top mRNA from alignment at D-mesarthrocarpus_Contig10558:617..2519- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10558.1.1 ID=mRNA_D-mesarthrocarpus_Contig10558.1.1|Name=mRNA_D-mesarthrocarpus_Contig10558.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1903bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10558:617..2519- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10558:617..2519- >mRNA_D-mesarthrocarpus_Contig10558.1.1 ID=mRNA_D-mesarthrocarpus_Contig10558.1.1|Name=mRNA_D-mesarthrocarpus_Contig10558.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=573bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10558:617..2519- (Discosporangium mesarthrocarpum MT17_79)back to top |