mRNA_D-mesarthrocarpus_Contig10551.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10551.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10551.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10551.2.1 vs. uniprot
Match: D7FLQ8_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ8_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.850e-32
Identity = 64/93 (68.82%), Postives = 73/93 (78.49%), Query Frame = 1
Query:   13 RHLGLQEVRTQLCLLKMVWDMVSLVDSLFGSWMTTLWADIKTDELLDEVKSLQQQIRKLPRRVRDWEAYADVEDRVVNMSTVLPLVSKSKPPS 291
            RH GL EVRTQL LLKMVWD+V LVD LF SW  TLWADIKTDELL+E +SLQ  IR LPRR+RDW  Y  V++RVVNMSTVLPL+ +   P+
Sbjct: 1496 RHTGLVEVRTQLRLLKMVWDVVGLVDGLFASWTATLWADIKTDELLEEARSLQLHIRGLPRRIRDWGLYKAVDERVVNMSTVLPLIHELHSPA 1588          
BLAST of mRNA_D-mesarthrocarpus_Contig10551.2.1 vs. uniprot
Match: F0XZT7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZT7_AURAN)

HSP 1 Score: 99.4 bits (246), Expect = 3.380e-22
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   25 LQEVRTQLCLLKMVWDMVSLVDSLFGSWMTTLWADIKTDELLDEVKSLQQQIRKLPRRVRDWEAYADVEDRVVNMSTVLPLVSKSKPPS 291
            L E+R +L  LK VWD V++V+SLF SW  TLW DI+TD+LLDE K L  Q+++LPRR+RDW  Y  +     NMSTVLPLV++   P+
Sbjct: 1346 LAEMRMELGFLKQVWDTVAVVESLFSSWKQTLWLDIQTDDLLDETKRLLNQVKRLPRRLRDWPCYLQLLASCTNMSTVLPLVAELHSPA 1434          
BLAST of mRNA_D-mesarthrocarpus_Contig10551.2.1 vs. uniprot
Match: A0A8J2SDE7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDE7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.610e-22
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 1
Query:   25 LQEVRTQLCLLKMVWDMVSLVDSLFGSWMTTLWADIKTDELLDEVKSLQQQIRKLPRRVRDWEAYADVEDRVVNMSTVLPLVSKSKPP 288
            L  +RT+L LLK VWD V +V+SLFGSW  TLW DI+ D+L+DE K L   +++LPRR+RDW  Y  ++  V NM+++LPLVS+ + P
Sbjct: 1325 LLTLRTELKLLKQVWDCVGVVESLFGSWSDTLWLDIRPDDLVDECKKLATHVKRLPRRLRDWPCYLRLQGSVQNMASILPLVSELRSP 1412          
BLAST of mRNA_D-mesarthrocarpus_Contig10551.2.1 vs. uniprot
Match: A0A482T3Q5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3Q5_9ARCH)

HSP 1 Score: 89.4 bits (220), Expect = 1.090e-18
Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = 1
Query:   16 HLGLQEVRTQLCLLKMVWDMVSLVDSLFGSWMTTLWADIKTDELLDEVKSLQQQIRKLPRRVRDWEAYADVEDRVVNMSTVLPLV 270
            H  ++E+   L  LK VWD V L++ LF +W  TLWA+IKTD+L++EVK LQ QI+  P++V++W  +  +E  V NMS  LPLV
Sbjct: 1271 HGSIKEIEHDLKCLKAVWDNVMLIECLFATWRNTLWAEIKTDDLMEEVKKLQNQIKNQPKKVKEWNVFKKLELEVKNMSICLPLV 1355          
BLAST of mRNA_D-mesarthrocarpus_Contig10551.2.1 vs. uniprot
Match: A0A7S3H611_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H611_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.370e-17
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   16 HLGLQEVRTQLCLLKMVWDMVSLVDSLFGSWMTTLWADIKTDELLDEVKSLQQQIRKLPRRVRDWEAYADVEDRVVNMSTVL 261
            H  ++E+   L +LK VWD V LV+SLF  W  TLWA+I TD LLDEVK LQ Q+++  ++ R+W  +  +E  V NM+  L
Sbjct:   18 HSSIREIGQDLRMLKTVWDTVLLVESLFAMWRNTLWAEIDTDSLLDEVKKLQNQLKRHTKKPREWSVFKRLEVEVKNMAISL 99          
BLAST of mRNA_D-mesarthrocarpus_Contig10551.2.1 vs. uniprot
Match: A0A7K4S8P4_COLPI (DYH9 protein (Fragment) n=1 Tax=Columbina picui TaxID=115618 RepID=A0A7K4S8P4_COLPI)

HSP 1 Score: 82.4 bits (202), Expect = 2.970e-16
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 1
Query:    1 ICVPRHLGLQEVRTQLCLLKMVWDMVSLVDSLFGSWMTTLWADIKTDELLDEVKSLQQQIRKLPRRVRDWEAYADVEDRVVNMSTVLPLVSKSKPPS 291
            + VP +  L++ R +LCLLK +WDM+SLVD+    W TT W DI  + +  E K   ++IR L + +R W+A+A ++ +V NM T L  V++ + P+
Sbjct: 1149 VMVPDYKQLKQCRKELCLLKELWDMISLVDTCLDDWQTTKWVDINVENMDLECKKFAREIRNLDKEMRAWDAFAGLDSKVKNMLTALKAVAELQNPA 1245          
BLAST of mRNA_D-mesarthrocarpus_Contig10551.2.1 vs. uniprot
Match: A0A7L3N549_9AVES (DYH9 protein (Fragment) n=1 Tax=Oreotrochilus melanogaster TaxID=689266 RepID=A0A7L3N549_9AVES)

HSP 1 Score: 82.4 bits (202), Expect = 2.970e-16
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 1
Query:    1 ICVPRHLGLQEVRTQLCLLKMVWDMVSLVDSLFGSWMTTLWADIKTDELLDEVKSLQQQIRKLPRRVRDWEAYADVEDRVVNMSTVLPLVSKSKPPS 291
            + VP +  L++ R +LCLLK +WDM+SLV++ F  W TT W DI  D +  E K   ++IR L + +R W+A+  ++ +V NM T L  V++ + P+
Sbjct: 1151 VMVPDYKQLKQCRKELCLLKELWDMISLVNTSFDDWQTTKWVDINVDNMDLECKKFAREIRNLDKEMRAWDAFTGLDSKVKNMLTALKAVAELQNPA 1247          
BLAST of mRNA_D-mesarthrocarpus_Contig10551.2.1 vs. uniprot
Match: A0A8J4J0L6_EUDMI (Dynein heavy chain 9, axonemal (Fragment) n=1 Tax=Eudyptula minor TaxID=37083 RepID=A0A8J4J0L6_EUDMI)

HSP 1 Score: 81.6 bits (200), Expect = 5.550e-16
Identity = 37/97 (38.14%), Postives = 61/97 (62.89%), Query Frame = 1
Query:    1 ICVPRHLGLQEVRTQLCLLKMVWDMVSLVDSLFGSWMTTLWADIKTDELLDEVKSLQQQIRKLPRRVRDWEAYADVEDRVVNMSTVLPLVSKSKPPS 291
            + VP +  L++ R +LCLLK +WDM+SLV++  G W TT W DI  + +  E K   ++IR L + +R W+A+  ++ +V NM T L  V++ + P+
Sbjct: 1141 VMVPDYKQLKQCRKELCLLKELWDMISLVNTSLGDWQTTKWVDINVENMDLECKKFAREIRNLDKEMRAWDAFTGLDSKVKNMMTALKAVAELQNPA 1237          
BLAST of mRNA_D-mesarthrocarpus_Contig10551.2.1 vs. uniprot
Match: A0A852EXF1_VIDMA (DYH9 protein (Fragment) n=1 Tax=Vidua macroura TaxID=187451 RepID=A0A852EXF1_VIDMA)

HSP 1 Score: 81.3 bits (199), Expect = 7.540e-16
Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    1 ICVPRHLGLQEVRTQLCLLKMVWDMVSLVDSLFGSWMTTLWADIKTDELLDEVKSLQQQIRKLPRRVRDWEAYADVEDRVVNMSTVLPLVSKSKPPS 291
            + VP +  L++ R +LCLLK +WDM+SLV+S    W TT W DI  + +  E K   ++IR L + VR W A++ ++ +V NM T L  V++ + P+
Sbjct: 1140 VMVPEYKQLKQCRKELCLLKELWDMISLVNSSLEDWQTTRWVDINVENMELECKKFAREIRSLDKEVRAWHAFSGLDSKVKNMLTALKAVAELQNPA 1236          
BLAST of mRNA_D-mesarthrocarpus_Contig10551.2.1 vs. uniprot
Match: A0A7K8AKF6_9CORV (DYH9 protein (Fragment) n=1 Tax=Cnemophilus loriae TaxID=254448 RepID=A0A7K8AKF6_9CORV)

HSP 1 Score: 80.9 bits (198), Expect = 1.030e-15
Identity = 37/97 (38.14%), Postives = 61/97 (62.89%), Query Frame = 1
Query:    1 ICVPRHLGLQEVRTQLCLLKMVWDMVSLVDSLFGSWMTTLWADIKTDELLDEVKSLQQQIRKLPRRVRDWEAYADVEDRVVNMSTVLPLVSKSKPPS 291
            + VP +  L++ R +LCLLK +WDM+SLV+S    W TT W DI  + +  E K   ++IR L + +R W+A++ ++ +V NM T L  V++ + P+
Sbjct: 1164 VTVPEYKQLKQCRKELCLLKELWDMISLVNSSLDDWQTTKWVDINVESMDLECKKFAREIRNLDKEMRAWDAFSGLDSKVKNMLTALKAVAELQNPA 1260          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10551.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLQ8_ECTSI1.850e-3268.82Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
F0XZT7_AURAN3.380e-2253.93Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SDE7_9STRA4.610e-2252.27Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A482T3Q5_9ARCH1.090e-1848.24Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3H611_9STRA1.370e-1746.34Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7K4S8P4_COLPI2.970e-1639.18DYH9 protein (Fragment) n=1 Tax=Columbina picui Ta... [more]
A0A7L3N549_9AVES2.970e-1639.18DYH9 protein (Fragment) n=1 Tax=Oreotrochilus mela... [more]
A0A8J4J0L6_EUDMI5.550e-1638.14Dynein heavy chain 9, axonemal (Fragment) n=1 Tax=... [more]
A0A852EXF1_VIDMA7.540e-1639.18DYH9 protein (Fragment) n=1 Tax=Vidua macroura Tax... [more]
A0A7K8AKF6_9CORV1.030e-1538.14DYH9 protein (Fragment) n=1 Tax=Cnemophilus loriae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10551contigD-mesarthrocarpus_Contig10551:2224..3163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FLQ8
Preferred nameODA-DHCB
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size291
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
Exons2
Evalue3.04e-33
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size291
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789191.9298515-CDS-D-mesarthrocarpus_Contig10551:2223..23791680789191.9298515-CDS-D-mesarthrocarpus_Contig10551:2223..2379Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10551 2224..2379 -
1680789191.9421022-CDS-D-mesarthrocarpus_Contig10551:3028..31631680789191.9421022-CDS-D-mesarthrocarpus_Contig10551:3028..3163Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10551 3029..3163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10551.2.1prot_D-mesarthrocarpus_Contig10551.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10551 2224..3163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10551.2.1

>prot_D-mesarthrocarpus_Contig10551.2.1 ID=prot_D-mesarthrocarpus_Contig10551.2.1|Name=mRNA_D-mesarthrocarpus_Contig10551.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=97bp
ICVPRHLGLQEVRTQLCLLKMVWDMVSLVDSLFGSWMTTLWADIKTDELL
DEVKSLQQQIRKLPRRVRDWEAYADVEDRVVNMSTVLPLVSKSKPPS
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mRNA from alignment at D-mesarthrocarpus_Contig10551:2224..3163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10551.2.1 ID=mRNA_D-mesarthrocarpus_Contig10551.2.1|Name=mRNA_D-mesarthrocarpus_Contig10551.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=940bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10551:2224..3163- (Discosporangium mesarthrocarpum MT17_79)
ATCTGTGTACCCAGGCACCTGGGTCTCCAAGAAGTTCGAACCCAGTTGTG CCTGCTCAAGATGGTATGGGACATGGTCAGCCTTGTGGACAGTCTCTTCG GCTCCTGGATGACTACATTATGGGCCGACATTAAGGTACCTCATGGTTTT TGAATGGATATTTATCCTTCCTGTTCTCCTCCCTCTACCCGGACGCCGAT GCGAAATACCGCGTAGGAAGGTGTCCCTGTGCTCTATCGCCAAGGGTTCA ATGGGCTGTGTTTGATCCAACATGTTGCTCTGCTTGTGGAATGTCGTGCT TGCCTGCGGGGAAACTCAGTGGCAGGACACCTTCAAAGCAAAACCACAGG GGCGGAGCTGTAGGGCTTTCATTTGGGGATGTTTTGGATGCAGGAATTGC GTCTAGAGTTAGATCCATATTTTGTACGAAGTACTCGGCAAGACTCAAGC CGTGCAAGGATGTGGAAGATCTATTGGTACTAAGGAATTTTCTGAATGCC GTTACCTTTGCCAGACCAGGCACCAATGTTTGTCCGGTCAGCCCTTCCTT ACCCTTCACCACAGTCGGAGTTATGTATCCCTGTTAATTGAAATCTTCCT TCGAGGATTGGAGCTCTCCTCGGGTATAAAGTTTTTCCCTCTAGCTAGGG AACCCAAGTGTGGTTGGCCTTCTTCCACAGCCCTCACCCCACCGTTCCTC ACCCAGTCGTTTACTTGTTCGTAGCTCTCCTCCGGGGGTGTCGAGTCGAC ACGAACTTCCCAAATCTTCTGTCACATGACTTAGACCGATGAGCTCTTGG ATGAGGTAAAGTCTCTGCAGCAGCAGATCCGGAAGCTTCCGAGAAGGGTC AGGGATTGGGAGGCGTACGCGGACGTGGAAGACAGGGTGGTGAACATGTC CACTGTGCTACCACTGGTGAGTAAATCAAAACCTCCGTCT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10551:2224..3163-

>mRNA_D-mesarthrocarpus_Contig10551.2.1 ID=mRNA_D-mesarthrocarpus_Contig10551.2.1|Name=mRNA_D-mesarthrocarpus_Contig10551.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=291bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10551:2224..3163- (Discosporangium mesarthrocarpum MT17_79)
ATCTGTGTACCCAGGCACCTGGGTCTCCAAGAAGTTCGAACCCAGTTGTG
CCTGCTCAAGATGGTATGGGACATGGTCAGCCTTGTGGACAGTCTCTTCG
GCTCCTGGATGACTACATTATGGGCCGACATTAAGACCGATGAGCTCTTG
GATGAGGTAAAGTCTCTGCAGCAGCAGATCCGGAAGCTTCCGAGAAGGGT
CAGGGATTGGGAGGCGTACGCGGACGTGGAAGACAGGGTGGTGAACATGT
CCACTGTGCTACCACTGGTGAGTAAATCAAAACCTCCGTCT
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