mRNA_D-mesarthrocarpus_Contig10525.7.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10525.7.1
Unique NamemRNA_D-mesarthrocarpus_Contig10525.7.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10525.7.1 vs. uniprot
Match: D7FWX3_ECTSI (Axonemal 1-beta dynein heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX3_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 9.570e-16
Identity = 31/44 (70.45%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 SYPKEGAHCDGLYLEGARWNKSEGCLEEPAAVELYFQMLVMHFR 132
            SYPKEGA+CDGL+L+GARWN+ EGCLEEP  +EL++QM V+HF+
Sbjct: 4636 SYPKEGAYCDGLFLDGARWNRQEGCLEEPPPMELFYQMPVIHFK 4679
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BLAST of mRNA_D-mesarthrocarpus_Contig10525.7.1 vs. uniprot
Match: A0A835Z4V1_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.990e-12
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    7 PKEGAHCDGLYLEGARWNKSEGCLEEPAAVELYFQMLVMHFR 132
            PKEGA+CDGL+LEGARW+K +GCL EP  ++LY +M V+HF+
Sbjct: 4489 PKEGAYCDGLFLEGARWSKIDGCLVEPEPMQLYHEMPVIHFK 4530
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BLAST of mRNA_D-mesarthrocarpus_Contig10525.7.1 vs. uniprot
Match: A0A7S3Y863_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y863_HETAK)

HSP 1 Score: 54.3 bits (129), Expect = 2.640e-8
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    4 YPKEGAHCDGLYLEGARWNKSEGCLEEPAAVELYFQMLVMHFR 132
            Y KEGA+  GL LEGARW+   G L EPA +ELY  M V+HF+
Sbjct:   48 YAKEGAYVSGLILEGARWDLDNGHLTEPAPMELYCDMPVIHFK 90
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BLAST of mRNA_D-mesarthrocarpus_Contig10525.7.1 vs. uniprot
Match: A0A485LGW2_9STRA (Aste57867_21193 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGW2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    7 PKEGAHCDGLYLEGARWNKSEGCLEEPAAVELYFQMLVMHF 129
            P +G + DGL+LEGARWN  + CLEE  A E++  M ++HF
Sbjct: 3879 PSDGIYVDGLWLEGARWNPKDKCLEEARAGEMFSPMALVHF 3919
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BLAST of mRNA_D-mesarthrocarpus_Contig10525.7.1 vs. uniprot
Match: A0A075B4L7_ROZAC (Dynein heavy chain, cytoplasmic n=2 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B4L7_ROZAC)

HSP 1 Score: 51.2 bits (121), Expect = 3.050e-6
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    7 PKEGAHCDGLYLEGARWNKSEGCLEEPAAVELYFQMLVMHFR 132
            PK+G +  G+YLEGA W+K   CL+EP  +EL   M V+HF+
Sbjct: 4552 PKDGIYVQGVYLEGASWDKKANCLKEPRPMELVTPMPVIHFK 4593
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BLAST of mRNA_D-mesarthrocarpus_Contig10525.7.1 vs. uniprot
Match: A0A813KKM9_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KKM9_POLGL)

HSP 1 Score: 48.1 bits (113), Expect = 3.750e-5
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   10 KEGAHCDGLYLEGARWNKSEGCLEEPAAVELYFQMLVMH 126
            +EG +  GL++EGARWNK EG LEE  A  L+  M VMH
Sbjct: 1004 EEGQNIHGLFIEGARWNKQEGKLEESEAKRLHMPMPVMH 1042
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BLAST of mRNA_D-mesarthrocarpus_Contig10525.7.1 vs. uniprot
Match: A0A813EGW3_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EGW3_POLGL)

HSP 1 Score: 48.1 bits (113), Expect = 3.750e-5
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   10 KEGAHCDGLYLEGARWNKSEGCLEEPAAVELYFQMLVMH 126
            +EG +  GL++EGARWNK EG LEE  A  L+  M VMH
Sbjct: 2406 EEGQNIHGLFIEGARWNKQEGKLEESEAKRLHMPMPVMH 2444
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BLAST of mRNA_D-mesarthrocarpus_Contig10525.7.1 vs. uniprot
Match: A0A7S1A901_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A901_NOCSC)

HSP 1 Score: 47.4 bits (111), Expect = 6.050e-5
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    7 PKEGAHCDGLYLEGARWNKSEGCLEEPAAVELYFQMLVMH 126
            P+EG H DGL++EGARWNK E  L+E    +L+  M V++
Sbjct:  130 PEEGQHIDGLFMEGARWNKQEARLDESEPKKLFVTMPVIY 169
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BLAST of mRNA_D-mesarthrocarpus_Contig10525.7.1 vs. uniprot
Match: A0A553QCA9_9TELE (Uncharacterized protein n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553QCA9_9TELE)

HSP 1 Score: 47.4 bits (111), Expect = 7.030e-5
Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:    7 PKEGAHCDGLYLEGARWNKSEGCLEEPAAVELYFQMLVMHFR 132
            PK+G    GLYLEGA W+K  GCL E   ++L+  M  +HF+
Sbjct:  937 PKDGVLIQGLYLEGAGWDKKAGCLVEAEPMQLFCPMPTIHFK 978
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BLAST of mRNA_D-mesarthrocarpus_Contig10525.7.1 vs. uniprot
Match: A0A8J2KGU8_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2KGU8_9HEXA)

HSP 1 Score: 47.0 bits (110), Expect = 9.620e-5
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    7 PKEGAHCDGLYLEGARWNKSEGCLEEPAAVELYFQMLVMHFR 132
            P +GA+C GL+LEGARW++  GCL E     LY  + V+ F+
Sbjct: 4044 PTDGAYCRGLFLEGARWDRKNGCLGESLPKILYDSLPVIWFK 4085
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10525.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FWX3_ECTSI9.570e-1670.45Axonemal 1-beta dynein heavy chain dynein heavy ch... [more]
A0A835Z4V1_9STRA5.990e-1264.29Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S3Y863_HETAK2.640e-858.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A485LGW2_9STRA2.230e-651.22Aste57867_21193 protein n=1 Tax=Aphanomyces stella... [more]
A0A075B4L7_ROZAC3.050e-650.00Dynein heavy chain, cytoplasmic n=2 Tax=Rozella al... [more]
A0A813KKM9_POLGL3.750e-556.41Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A813EGW3_POLGL3.750e-556.41Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7S1A901_NOCSC6.050e-550.00Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A553QCA9_9TELE7.030e-547.62Uncharacterized protein n=1 Tax=Danionella translu... [more]
A0A8J2KGU8_9HEXA9.620e-547.62Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10525contigD-mesarthrocarpus_Contig10525:3366..3497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWX3
Preferred nameDNAH2
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size132
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008017,GO:0008092,GO:0008150,GO:0008569,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0031514,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036156,GO:0036159,GO:0040011,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045505,GO:0048870,GO:0051179,GO:0051674,GO:0051959,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494,GO:1990939
Exons1
Evalue1.57e-16
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size132
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789189.524259-CDS-D-mesarthrocarpus_Contig10525:3365..34971680789189.524259-CDS-D-mesarthrocarpus_Contig10525:3365..3497Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10525 3366..3497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10525.7.1prot_D-mesarthrocarpus_Contig10525.7.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10525 3366..3497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10525.7.1

>prot_D-mesarthrocarpus_Contig10525.7.1 ID=prot_D-mesarthrocarpus_Contig10525.7.1|Name=mRNA_D-mesarthrocarpus_Contig10525.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=44bp
SYPKEGAHCDGLYLEGARWNKSEGCLEEPAAVELYFQMLVMHFR
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mRNA from alignment at D-mesarthrocarpus_Contig10525:3366..3497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10525.7.1 ID=mRNA_D-mesarthrocarpus_Contig10525.7.1|Name=mRNA_D-mesarthrocarpus_Contig10525.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=132bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10525:3366..3497+ (Discosporangium mesarthrocarpum MT17_79)
AGCTACCCCAAGGAGGGAGCGCACTGCGATGGGCTTTACCTCGAGGGCGC
AAGGTGGAACAAGTCAGAGGGCTGCCTTGAGGAGCCAGCCGCTGTGGAAT
TGTACTTCCAGATGCTTGTTATGCACTTCAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10525:3366..3497+

>mRNA_D-mesarthrocarpus_Contig10525.7.1 ID=mRNA_D-mesarthrocarpus_Contig10525.7.1|Name=mRNA_D-mesarthrocarpus_Contig10525.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=132bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10525:3366..3497+ (Discosporangium mesarthrocarpum MT17_79)
AGCTACCCCAAGGAGGGAGCGCACTGCGATGGGCTTTACCTCGAGGGCGC
AAGGTGGAACAAGTCAGAGGGCTGCCTTGAGGAGCCAGCCGCTGTGGAAT
TGTACTTCCAGATGCTTGTTATGCACTTCAGG
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