mRNA_D-mesarthrocarpus_Contig1052.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1052.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig1052.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1052.1.1 vs. uniprot
Match: D8LLK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK4_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 6.080e-26
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 VDKYDDTNTSANKLMLALTGMGFELDFPASRLKMAYGEPACAVLDFLTGKALDAVGHVWQRPVHQEEEITE 213
            VDKYDD NT+ NKLMLALTGMGF+L+FPA+RLK AYGE AC+VL+FLT KAL A G VW+RPV+  E+  E
Sbjct:   69 VDKYDDPNTAVNKLMLALTGMGFDLNFPANRLKQAYGEAACSVLNFLTDKALSATGFVWRRPVYAAEDAAE 139
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BLAST of mRNA_D-mesarthrocarpus_Contig1052.1.1 vs. uniprot
Match: A0A8K1C707_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C707_PYTOL)

HSP 1 Score: 92.4 bits (228), Expect = 2.050e-20
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 VDKYDDTNTSANKLMLALTGMGFELDFPASRLKMAYGEPACAVLDFLTGKALDAVGHVWQRPVHQEEEITE 213
            VDKYDD NTS NKL+LAL  MGF LDFPAS+LK+ YGE ACA LDF++ KAL A    W RP + +E+  +
Sbjct:   90 VDKYDDPNTSVNKLILALKVMGFPLDFPASKLKLGYGEAACAALDFISDKALSARNFAWPRPSYPKEDFAD 160
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BLAST of mRNA_D-mesarthrocarpus_Contig1052.1.1 vs. uniprot
Match: A0A7S3XR66_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR66_HETAK)

HSP 1 Score: 92.0 bits (227), Expect = 2.800e-20
Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 VDKYDDTNTSANKLMLALTGMGFELDFPASRLKMAYGEPACAVLDFLTGKALDAVGHVWQRPVHQEEEI 207
            +++YDD NT+ANKL+LAL  + FELD PAS+LK  YGE   + LDFLTG+AL A GHVW RPV++E+E+
Sbjct:   84 LEEYDDPNTAANKLVLALKKLDFELDVPASKLKTPYGEAVASTLDFLTGRALAARGHVWGRPVYKEDEL 152
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BLAST of mRNA_D-mesarthrocarpus_Contig1052.1.1 vs. uniprot
Match: F0W1A9_9STRA (Intraflagellar Transport Protein 57 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W1A9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.850e-20
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    1 VDKYDDTNTSANKLMLALTGMGFELDFPASRLKMAYGEPACAVLDFLTGKALDAVGHVWQRPVHQEEEITE 213
            VDKYDD NTS NKL+L+L  MGF LDFPAS+LK+ YGE  CA +DFL  KAL+A    W RP + +E+  +
Sbjct:   89 VDKYDDPNTSVNKLILSLKSMGFPLDFPASKLKLGYGEAVCAAIDFLCDKALEARNFTWTRPTYPKEDFAD 159
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BLAST of mRNA_D-mesarthrocarpus_Contig1052.1.1 vs. uniprot
Match: A0A2D4BPI7_PYTIN (Intraflagellar Transport Protein 57 (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPI7_PYTIN)

HSP 1 Score: 87.8 bits (216), Expect = 7.310e-19
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 VDKYDDTNTSANKLMLALTGMGFELDFPASRLKMAYGEPACAVLDFLTGKALDAVGHVWQRPVHQEEEITE 213
            VDKYDD NTS NKL+LAL  MGF LDFPAS+LK+ YGE  CA L+F+  KAL A    W RP + +E+  +
Sbjct:   94 VDKYDDPNTSVNKLILALKVMGFPLDFPASKLKLGYGEAVCAALEFICDKALAARNFAWPRPSYPKEDFAD 164
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BLAST of mRNA_D-mesarthrocarpus_Contig1052.1.1 vs. uniprot
Match: A0A1V9ZM18_9STRA (Intraflagellar Transport Protein 57 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZM18_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 7.720e-19
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 VDKYDDTNTSANKLMLALTGMGFELDFPASRLKMAYGEPACAVLDFLTGKALDAVGHVWQRPVHQEEEITE 213
            VDKYDD NTS NKL+LAL  MGF LDFPA++LK  YGE  CA L+F+  KAL A G  W +P + +EE  E
Sbjct:   92 VDKYDDPNTSVNKLILALKMMGFSLDFPATKLKQGYGEAVCAALEFICDKALAARGFNWTKPKYPKEEYAE 162
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BLAST of mRNA_D-mesarthrocarpus_Contig1052.1.1 vs. uniprot
Match: A0A6G0XEZ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XEZ7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.340e-18
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 VDKYDDTNTSANKLMLALTGMGFELDFPASRLKMAYGEPACAVLDFLTGKALDAVGHVWQRPVHQEEEITE 213
            VDKYDD NTS NKL+LAL  MGF LDFPA++LK  YGE  C  L+F+  KAL A G  W +P + +EE  E
Sbjct:   91 VDKYDDPNTSVNKLILALKMMGFPLDFPAAKLKQGYGEAVCTTLEFICDKALAAKGFAWAKPNYPKEEYAE 161
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BLAST of mRNA_D-mesarthrocarpus_Contig1052.1.1 vs. uniprot
Match: A0A485KRK3_9STRA (Aste57867_10634 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRK3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.370e-18
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 VDKYDDTNTSANKLMLALTGMGFELDFPASRLKMAYGEPACAVLDFLTGKALDAVGHVWQRPVHQEEEITE 213
            VDKYDD NTS NKL+LAL  MGF LDFPA++LK  +GE AC  L+F+  KAL A G  W +P + +EE  E
Sbjct:   91 VDKYDDPNTSVNKLILALKMMGFPLDFPAAKLKQGFGEAACTTLEFICDKALAAKGFTWAKPNYPKEEYAE 161
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BLAST of mRNA_D-mesarthrocarpus_Contig1052.1.1 vs. uniprot
Match: T0QS21_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QS21_SAPDV)

HSP 1 Score: 87.0 bits (214), Expect = 1.930e-18
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 VDKYDDTNTSANKLMLALTGMGFELDFPASRLKMAYGEPACAVLDFLTGKALDAVGHVWQRPVHQEEEITE 213
            VDKYDD NTS NKL+LAL  MGF LDFPA++LK  YGE  C+ L+F+  KAL A G  W +P + +EE  E
Sbjct:   93 VDKYDDPNTSVNKLILALKIMGFPLDFPAAKLKQGYGEAVCSALEFICDKALAAKGFSWTKPKYPKEEYAE 163
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BLAST of mRNA_D-mesarthrocarpus_Contig1052.1.1 vs. uniprot
Match: A0A225WXM7_9STRA (Intraflagellar Transport Protein 57 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXM7_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.810e-18
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 VDKYDDTNTSANKLMLALTGMGFELDFPASRLKMAYGEPACAVLDFLTGKALDAVGHVWQRPVHQEEEITE 213
            VDKYDD NTS NKL+L L  MGF LDFPAS+LK+ YGE  CA LDF+  +AL A    W RP + +EE  +
Sbjct:   64 VDKYDDPNTSVNKLILTLKTMGFPLDFPASKLKLGYGEAVCAALDFICDQALAARRFDWPRPQYPKEEFAD 134
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1052.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLK4_ECTSI6.080e-2670.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1C707_PYTOL2.050e-2060.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3XR66_HETAK2.800e-2060.87Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0W1A9_9STRA3.850e-2057.75Intraflagellar Transport Protein 57 putative n=1 T... [more]
A0A2D4BPI7_PYTIN7.310e-1957.75Intraflagellar Transport Protein 57 (Fragment) n=1... [more]
A0A1V9ZM18_9STRA7.720e-1959.15Intraflagellar Transport Protein 57 n=1 Tax=Achlya... [more]
A0A6G0XEZ7_9STRA1.340e-1857.75Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KRK3_9STRA1.370e-1857.75Aste57867_10634 protein n=1 Tax=Aphanomyces stella... [more]
T0QS21_SAPDV1.930e-1857.75Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A225WXM7_9STRA4.810e-1857.75Intraflagellar Transport Protein 57 n=1 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1052contigD-mesarthrocarpus_Contig1052:461..1072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LLK4
Preferred nameIFT57
PFAMsIFT57
Model size222
Max annot lvl2759|Eukaryota
KEGG koko:K04638
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001754,GO:0001838,GO:0001841,GO:0001843,GO:0001894,GO:0001895,GO:0001947,GO:0002009,GO:0003002,GO:0003007,GO:0003143,GO:0003341,GO:0003351,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006915,GO:0006919,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007610,GO:0007635,GO:0008104,GO:0008150,GO:0008219,GO:0008285,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009893,GO:0009966,GO:0009987,GO:0010604,GO:0010646,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0010970,GO:0012501,GO:0012505,GO:0014020,GO:0015630,GO:0016043,GO:0016331,GO:0019222,GO:0021915,GO:0022008,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030182,GO:0030425,GO:0030705,GO:0030990,GO:0030992,GO:0031323,GO:0031325,GO:0031503,GO:0032006,GO:0032268,GO:0032270,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0035050,GO:0035148,GO:0035239,GO:0035295,GO:0035720,GO:0035721,GO:0035735,GO:0035869,GO:0036064,GO:0036477,GO:0042073,GO:0042127,GO:0042221,GO:0042461,GO:0042462,GO:0042592,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043280,GO:0043281,GO:0044085,GO:0044093,GO:0044292,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0045494,GO:0045862,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048592,GO:0048598,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048871,GO:0050678,GO:0050680,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0060249,GO:0060255,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0060972,GO:0061371,GO:0065007,GO:0065008,GO:0065009,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0080090,GO:0090596,GO:0097014,GO:0097447,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902531,GO:1905515,GO:2000116,GO:2001056
Exons2
Evalue9.97e-27
EggNOG OGsKOG0972@1|root,KOG0972@2759|Eukaryota
Descriptionintraciliary transport
Cds size222
COG categoryT
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.5640984-CDS-D-mesarthrocarpus_Contig1052:460..5801680789188.5640984-CDS-D-mesarthrocarpus_Contig1052:460..580Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1052 461..580 -
1680789188.578279-CDS-D-mesarthrocarpus_Contig1052:970..10721680789188.578279-CDS-D-mesarthrocarpus_Contig1052:970..1072Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1052 971..1072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1052.1.1prot_D-mesarthrocarpus_Contig1052.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1052 461..1072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1052.1.1

>prot_D-mesarthrocarpus_Contig1052.1.1 ID=prot_D-mesarthrocarpus_Contig1052.1.1|Name=mRNA_D-mesarthrocarpus_Contig1052.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=74bp
VDKYDDTNTSANKLMLALTGMGFELDFPASRLKMAYGEPACAVLDFLTGK
ALDAVGHVWQRPVHQEEEITEVP*
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mRNA from alignment at D-mesarthrocarpus_Contig1052:461..1072-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1052.1.1 ID=mRNA_D-mesarthrocarpus_Contig1052.1.1|Name=mRNA_D-mesarthrocarpus_Contig1052.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=612bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1052:461..1072- (Discosporangium mesarthrocarpum MT17_79)
GTGGACAAGTATGATGACACCAACACCTCAGCGAACAAGCTCATGCTGGC
TCTCACTGGCATGGGGTTTGAGCTGGACTTCCCTGCCAGCCGCCTCAAGA
TGGTGAGAGGGGGACCTCGGGGGGGGGGGGGCAACACTTAGGAAAGATTT
TGCCTCCAAAGGTTGCCAATTTATACACAATTCATCAACAATTACCAAAA
CCACAATATTCTGAACCAAGCTGCGCAAAACGCAGAGAAGGGTTAGGGTA
TGGAGTTGAGCGGGACTAGAGGAGAGAATTTCGGTCGGGTTTATTCCCCC
CTGCATGAAACTCTTGCGCTTGGCAGCTGAGGACGCTCAGACATGACCCC
ACCCCGGTTCGATGCACCAAAATCTTGCCTGAGCCCACCTCATGGAGAAG
ACCTTCCCAAGCTCAGGGCCCTGCCCATCCTCCAACCCTAAGCCCGCCCA
CACTGGCTGTGTTTGTACACCTGGGAAAAAAACACCGGCCAGGCCTATGG
GGAACCTGCTTGTGCCGTGCTGGATTTCTTGACGGGTAAGGCATTGGATG
CCGTCGGTCACGTCTGGCAGCGACCGGTCCACCAAGAGGAAGAGATAACT
GAGGTGCCGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1052:461..1072-

>mRNA_D-mesarthrocarpus_Contig1052.1.1 ID=mRNA_D-mesarthrocarpus_Contig1052.1.1|Name=mRNA_D-mesarthrocarpus_Contig1052.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=222bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1052:461..1072- (Discosporangium mesarthrocarpum MT17_79)
GTGGACAAGTATGATGACACCAACACCTCAGCGAACAAGCTCATGCTGGC
TCTCACTGGCATGGGGTTTGAGCTGGACTTCCCTGCCAGCCGCCTCAAGA
TGGCCTATGGGGAACCTGCTTGTGCCGTGCTGGATTTCTTGACGGGTAAG
GCATTGGATGCCGTCGGTCACGTCTGGCAGCGACCGGTCCACCAAGAGGA
AGAGATAACTGAGGTGCCGTGA
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