mRNA_D-mesarthrocarpus_Contig10516.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10516.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10516.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10516.1.1 vs. uniprot
Match: A0A7S2Y3E8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3E8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.420e-8
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 HAEEQAMEVEALEAIYMESFTKTSDIPLEWRLKLEPHP 114
            HAEEQ MEVEALEAIY++ F+KTS+ PLE++L LEP P
Sbjct:   26 HAEEQEMEVEALEAIYVDEFSKTSEDPLEFKLFLEPFP 63
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10516.1.1 vs. uniprot
Match: A0A7S3YJK7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJK7_HETAK)

HSP 1 Score: 52.4 bits (124), Expect = 9.410e-7
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 HAEEQAMEVEALEAIYMESFTKTSDIPLEWRLKLEPHPDG 120
            +AEEQ+MEVEALEAIYME +TK +D PLE+++ LEP   G
Sbjct:    3 YAEEQSMEVEALEAIYMEEYTKIADSPLEYKIFLEPIQGG 42
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10516.1.1 vs. uniprot
Match: A0A484EBS0_BRELC (RWD domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBS0_BRELC)

HSP 1 Score: 51.2 bits (121), Expect = 1.040e-6
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 HAEEQAMEVEALEAIYMESFTKTSDIPLEWRLKLEPHPDG 120
            + EEQAMEVEALEAIYM  FTK SD PL +++ + P+ DG
Sbjct:    4 YQEEQAMEVEALEAIYMNDFTKLSDTPLAYQIHIVPNQDG 43
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10516.1.1 vs. uniprot
Match: W2XV18_PHYPR (RWD domain-containing protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2XV18_PHYPR)

HSP 1 Score: 50.4 bits (119), Expect = 3.340e-6
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 HAEEQAMEVEALEAIYMESFTKTSDIPLEWRLKLEPHPDG 120
            + EEQAMEVEALEAIYM+ FTK SD PL +++ + P+ DG
Sbjct:    4 YKEEQAMEVEALEAIYMDDFTKLSDEPLTYQVHVVPNQDG 43
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10516.1.1 vs. uniprot
Match: A0A3R7H247_9STRA (RWD domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H247_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 3.850e-6
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 HAEEQAMEVEALEAIYMESFTKTSDIPLEWRLKLEPHPDG 120
            + EEQ+MEVEALEAIYM+ FTK SD PL +++++ P+ DG
Sbjct:    4 YKEEQSMEVEALEAIYMDDFTKLSDDPLSFQVRVVPNQDG 43
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10516.1.1 vs. uniprot
Match: A0A329RW31_9STRA (RWD domain-containing protein n=2 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RW31_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.220e-6
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 HAEEQAMEVEALEAIYMESFTKTSDIPLEWRLKLEPHPDG 120
            + EEQAMEVEALEAIYM+ FTK SD PL +++ + P+ DG
Sbjct:   13 YKEEQAMEVEALEAIYMDDFTKLSDEPLTYQVHVVPNQDG 52
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10516.1.1 vs. uniprot
Match: W2JV81_PHYPR (Uncharacterized protein n=21 Tax=Phytophthora TaxID=4783 RepID=W2JV81_PHYPR)

HSP 1 Score: 50.4 bits (119), Expect = 4.760e-6
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 HAEEQAMEVEALEAIYMESFTKTSDIPLEWRLKLEPHPDG 120
            + EEQAMEVEALEAIYM+ FTK SD PL +++ + P+ DG
Sbjct:    4 YKEEQAMEVEALEAIYMDDFTKLSDEPLTYQVHVVPNQDG 43
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10516.1.1 vs. uniprot
Match: W2JVN5_PHYPR (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2JVN5_PHYPR)

HSP 1 Score: 50.4 bits (119), Expect = 4.760e-6
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 HAEEQAMEVEALEAIYMESFTKTSDIPLEWRLKLEPHPDG 120
            + EEQAMEVEALEAIYM+ FTK SD PL +++ + P+ DG
Sbjct:    4 YKEEQAMEVEALEAIYMDDFTKLSDEPLTYQVHVVPNQDG 43
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10516.1.1 vs. uniprot
Match: A0A8J5MG26_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MG26_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.760e-6
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 HAEEQAMEVEALEAIYMESFTKTSDIPLEWRLKLEPHPDG 120
            + EEQAMEVEALEAIYM+ FTK SD PL +++ + P+ DG
Sbjct:   13 YKEEQAMEVEALEAIYMDDFTKLSDEPLTYQVHVVPNQDG 52
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10516.1.1 vs. uniprot
Match: W2JTK7_PHYPR (RWD domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2JTK7_PHYPR)

HSP 1 Score: 50.4 bits (119), Expect = 4.760e-6
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 HAEEQAMEVEALEAIYMESFTKTSDIPLEWRLKLEPHPDG 120
            + EEQAMEVEALEAIYM+ FTK SD PL +++ + P+ DG
Sbjct:    4 YKEEQAMEVEALEAIYMDDFTKLSDEPLTYQVHVVPNQDG 43
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10516.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A7S2Y3E8_9STRA2.420e-871.05Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3YJK7_HETAK9.410e-765.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A484EBS0_BRELC1.040e-662.50RWD domain-containing protein n=1 Tax=Bremia lactu... [more]
W2XV18_PHYPR3.340e-662.50RWD domain-containing protein n=7 Tax=Phytophthora... [more]
A0A3R7H247_9STRA3.850e-660.00RWD domain-containing protein n=4 Tax=Phytophthora... [more]
A0A329RW31_9STRA4.220e-662.50RWD domain-containing protein n=2 Tax=Phytophthora... [more]
W2JV81_PHYPR4.760e-662.50Uncharacterized protein n=21 Tax=Phytophthora TaxI... [more]
W2JVN5_PHYPR4.760e-662.50Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
A0A8J5MG26_9STRA4.760e-662.50Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
W2JTK7_PHYPR4.760e-662.50RWD domain-containing protein n=1 Tax=Phytophthora... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10516contigD-mesarthrocarpus_Contig10516:201..320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.1143
PFAMsDFRP_C,RWD
Model size120
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue7.24e-06
EggNOG OGsKOG4018@1|root,KOG4018@2759|Eukaryota,3QA84@4776|Peronosporales
DescriptionRWD domain
Cds size102
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.278343-CDS-D-mesarthrocarpus_Contig10516:200..3021680789188.278343-CDS-D-mesarthrocarpus_Contig10516:200..302Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10516 201..302 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.288215-UTR-D-mesarthrocarpus_Contig10516:302..3201680789188.288215-UTR-D-mesarthrocarpus_Contig10516:302..320Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10516 303..320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10516.1.1prot_D-mesarthrocarpus_Contig10516.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10516 201..302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10516.1.1

>prot_D-mesarthrocarpus_Contig10516.1.1 ID=prot_D-mesarthrocarpus_Contig10516.1.1|Name=mRNA_D-mesarthrocarpus_Contig10516.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=34bp
MEVEALEAIYMESFTKTSDIPLEWRLKLEPHPDG
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10516:201..320-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10516.1.1 ID=mRNA_D-mesarthrocarpus_Contig10516.1.1|Name=mRNA_D-mesarthrocarpus_Contig10516.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=120bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10516:201..320- (Discosporangium mesarthrocarpum MT17_79)
CATGCAGAGGAGCAGGCGATGGAGGTGGAGGCGCTGGAGGCCATATACAT
GGAGTCCTTCACCAAGACCAGTGACATCCCCCTTGAGTGGCGACTGAAGC
TGGAGCCCCACCCAGACGGC
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10516:201..320-

>mRNA_D-mesarthrocarpus_Contig10516.1.1 ID=mRNA_D-mesarthrocarpus_Contig10516.1.1|Name=mRNA_D-mesarthrocarpus_Contig10516.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=102bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10516:201..320- (Discosporangium mesarthrocarpum MT17_79)
ATGGAGGTGGAGGCGCTGGAGGCCATATACATGGAGTCCTTCACCAAGAC
CAGTGACATCCCCCTTGAGTGGCGACTGAAGCTGGAGCCCCACCCAGACG
GC
back to top