mRNA_D-mesarthrocarpus_Contig10515.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10515.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10515.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10515.1.1 vs. uniprot
Match: A0A6H5L5E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E9_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.410e-31
Identity = 53/64 (82.81%), Postives = 61/64 (95.31%), Query Frame = 1
Query:    1 QLDLNKVPQNIVSWPTEPILRPTRAVVPPAFGVDISPIVWVMICSFLHEILLGQQGILNLISSK 192
            +LDLN  PQN+V+WPTEPILRPTRA++PPAFGVDISPIVWVMICS +HEILLGQQGILNL+S+K
Sbjct:  158 KLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 221          
BLAST of mRNA_D-mesarthrocarpus_Contig10515.1.1 vs. uniprot
Match: D8LHQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ4_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 4.860e-31
Identity = 52/64 (81.25%), Postives = 61/64 (95.31%), Query Frame = 1
Query:    1 QLDLNKVPQNIVSWPTEPILRPTRAVVPPAFGVDISPIVWVMICSFLHEILLGQQGILNLISSK 192
            +LDLN  PQN+V+WPTEPIL+PTRA++PPAFGVDISPIVWVMICS +HEILLGQQGILNL+S+K
Sbjct:  166 KLDLNSAPQNLVAWPTEPILKPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 229          
BLAST of mRNA_D-mesarthrocarpus_Contig10515.1.1 vs. uniprot
Match: A0A836CA21_9STRA (YGGT family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA21_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.880e-28
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1
Query:    1 QLDLNKVPQNIVSWPTEPILRPTRAVVPPAFGVDISPIVWVMICSFLHEILLGQQGILNLISSK 192
            Q DLNK PQN+V+WPTEPIL+PTRAVVPPAFGVDISPIVWVMI SF+ EIL GQQGI N++S +
Sbjct:  126 QTDLNKAPQNLVAWPTEPILKPTRAVVPPAFGVDISPIVWVMILSFVREILFGQQGIFNMLSQQ 189          
BLAST of mRNA_D-mesarthrocarpus_Contig10515.1.1 vs. uniprot
Match: A0A7S2GHS6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHS6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.180e-23
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1
Query:    1 QLDLNKVPQNIVSWPTEPILRPTRAVVPPAFGVDISPIVWVMICSFLHEILLGQQGILNLI 183
            +++LNK+P NI++WPTEP LRPTR V+PPAFGVDISPIVW+ I SF  EI  GQQG+ N++
Sbjct:  110 EINLNKLPYNIITWPTEPFLRPTRKVIPPAFGVDISPIVWIAILSFFREIFFGQQGVFNML 170          
BLAST of mRNA_D-mesarthrocarpus_Contig10515.1.1 vs. uniprot
Match: UPI0016891C49 (YggT family protein n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI0016891C49)

HSP 1 Score: 91.7 bits (226), Expect = 9.880e-23
Identity = 40/64 (62.50%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    1 QLDLNKVPQNIVSWPTEPILRPTRAVVPPAFGVDISPIVWVMICSFLHEILLGQQGILNLISSK 192
            Q+DLN+ P N+++WPTEP L PTR ++PP  GVDISPIVWV ICS + EILLGQQG+L +++S+
Sbjct:   33 QVDLNRFPFNLIAWPTEPFLIPTRKLIPPLGGVDISPIVWVGICSLIREILLGQQGLLTMMASR 96          
BLAST of mRNA_D-mesarthrocarpus_Contig10515.1.1 vs. uniprot
Match: A0A846F7I1_9CYAN (YggT family protein n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846F7I1_9CYAN)

HSP 1 Score: 90.1 bits (222), Expect = 4.020e-22
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 QLDLNKVPQNIVSWPTEPILRPTRAVVPPAFGVDISPIVWVMICSFLHEILLGQQGILNLIS 186
            Q+DLN++P N+V+WPTEP+L PTR +VPP  GVDI+PI+WV I S L EILLGQQG+L +IS
Sbjct:   33 QVDLNQLPYNLVAWPTEPLLIPTRKLVPPIGGVDIAPIIWVAILSLLREILLGQQGLLTMIS 94          
BLAST of mRNA_D-mesarthrocarpus_Contig10515.1.1 vs. uniprot
Match: A0A7S2PCB6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCB6_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.470e-22
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1
Query:    1 QLDLNKVPQNIVSWPTEPILRPTRAVVPPAFGVDISPIVWVMICSFLHEILLGQQGILNL 180
            + ++N+VP NIV WPTEP+LR TR VVPPAFGVDISPIVW+ + +FLHEI LGQQG+L L
Sbjct:  109 ETNVNEVPYNIVVWPTEPLLRVTRGVVPPAFGVDISPIVWLGVFTFLHEIFLGQQGLLTL 168          
BLAST of mRNA_D-mesarthrocarpus_Contig10515.1.1 vs. uniprot
Match: F0XY49_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY49_AURAN)

HSP 1 Score: 89.4 bits (220), Expect = 6.320e-22
Identity = 39/64 (60.94%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    1 QLDLNKVPQNIVSWPTEPILRPTRAVVPPAFGVDISPIVWVMICSFLHEILLGQQGILNLISSK 192
            + DLN +P  IV+WPTEP+L+ TRAVVPP+FGVD+SPIVW+ + SF  E+LLGQQG+L L+  +
Sbjct:   24 ETDLNDMPWRIVTWPTEPVLKLTRAVVPPSFGVDVSPIVWIAVASFSRELLLGQQGVLILMMQR 87          
BLAST of mRNA_D-mesarthrocarpus_Contig10515.1.1 vs. uniprot
Match: UPI0016866C19 (YggT family protein n=1 Tax=Microcoleus sp. FACHB-1515 TaxID=2692821 RepID=UPI0016866C19)

HSP 1 Score: 88.6 bits (218), Expect = 1.630e-21
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 1
Query:    1 QLDLNKVPQNIVSWPTEPILRPTRAVVPPAFGVDISPIVWVMICSFLHEILLGQQGILNLIS 186
            Q+DLNK+P N+++WPTEP LRP R +VPP  GVDISPIVW+ I S + E+LLGQQG+L ++S
Sbjct:   32 QIDLNKLPYNLIAWPTEPFLRPMRKLVPPLGGVDISPIVWIGIFSLVRELLLGQQGLLTMMS 93          
BLAST of mRNA_D-mesarthrocarpus_Contig10515.1.1 vs. uniprot
Match: A0A651EN12_9CYAN (YggT family protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A651EN12_9CYAN)

HSP 1 Score: 88.6 bits (218), Expect = 1.720e-21
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 QLDLNKVPQNIVSWPTEPILRPTRAVVPPAFGVDISPIVWVMICSFLHEILLGQQGILNLISS 189
            Q DLN +P NIV+WPTEP LRPTR ++PP  GVD+SPI+WV I S L EILLGQQG++ + S+
Sbjct:   33 QADLNSLPLNIVAWPTEPFLRPTRKLIPPLGGVDVSPIIWVGIASLLREILLGQQGLITIWSN 95          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10515.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5E9_9PHAE1.410e-3182.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHQ4_ECTSI4.860e-3181.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CA21_9STRA1.880e-2878.13YGGT family-domain-containing protein n=1 Tax=Trib... [more]
A0A7S2GHS6_9STRA2.180e-2365.57Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI0016891C499.880e-2362.50YggT family protein n=1 Tax=Microcoleus sp. FACHB-... [more]
A0A846F7I1_9CYAN4.020e-2266.13YggT family protein n=1 Tax=Cyanothece sp. SIO1E1 ... [more]
A0A7S2PCB6_9STRA5.470e-2270.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
F0XY49_AURAN6.320e-2260.94Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
UPI0016866C191.630e-2162.90YggT family protein n=1 Tax=Microcoleus sp. FACHB-... [more]
A0A651EN12_9CYAN1.720e-2163.49YggT family protein n=3 Tax=Cyanobacteria TaxID=11... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10515contigD-mesarthrocarpus_Contig10515:2391..2585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LHQ4
Preferred nameCCB3
PFAMsYGGT
Model size195
Max annot lvl2759|Eukaryota
KEGG koko:K02221
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0010190,GO:0016020,GO:0016043,GO:0017004,GO:0022607,GO:0031976,GO:0031984,GO:0034357,GO:0034622,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0065003,GO:0071840
Exons1
Evalue7.96e-32
EggNOG OGsCOG0762@1|root,2S21M@2759|Eukaryota
DescriptionYGGT family
Cds size195
COG categoryS
BRITEko00000,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.245509-CDS-D-mesarthrocarpus_Contig10515:2390..25851680789188.245509-CDS-D-mesarthrocarpus_Contig10515:2390..2585Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10515 2391..2585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10515.1.1prot_D-mesarthrocarpus_Contig10515.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10515 2391..2585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10515.1.1

>prot_D-mesarthrocarpus_Contig10515.1.1 ID=prot_D-mesarthrocarpus_Contig10515.1.1|Name=mRNA_D-mesarthrocarpus_Contig10515.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=65bp
QLDLNKVPQNIVSWPTEPILRPTRAVVPPAFGVDISPIVWVMICSFLHEI
LLGQQGILNLISSK*
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mRNA from alignment at D-mesarthrocarpus_Contig10515:2391..2585+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10515.1.1 ID=mRNA_D-mesarthrocarpus_Contig10515.1.1|Name=mRNA_D-mesarthrocarpus_Contig10515.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=195bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10515:2391..2585+ (Discosporangium mesarthrocarpum MT17_79)
CAGCTTGACCTGAACAAGGTGCCACAGAACATCGTGTCATGGCCCACAGA ACCCATCCTGAGGCCAACGCGTGCGGTGGTTCCACCAGCGTTTGGGGTGG ACATCAGCCCCATTGTGTGGGTCATGATCTGCTCCTTCCTCCACGAGATA CTGCTGGGGCAGCAGGGCATTCTCAACCTCATCTCCAGCAAATAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10515:2391..2585+

>mRNA_D-mesarthrocarpus_Contig10515.1.1 ID=mRNA_D-mesarthrocarpus_Contig10515.1.1|Name=mRNA_D-mesarthrocarpus_Contig10515.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=195bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10515:2391..2585+ (Discosporangium mesarthrocarpum MT17_79)
CAGCTTGACCTGAACAAGGTGCCACAGAACATCGTGTCATGGCCCACAGA
ACCCATCCTGAGGCCAACGCGTGCGGTGGTTCCACCAGCGTTTGGGGTGG
ACATCAGCCCCATTGTGTGGGTCATGATCTGCTCCTTCCTCCACGAGATA
CTGCTGGGGCAGCAGGGCATTCTCAACCTCATCTCCAGCAAATAG
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