mRNA_D-mesarthrocarpus_Contig10510.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10510.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10510.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10510.2.1 vs. uniprot
Match: D8LR68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR68_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.360e-17
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 3 
Query:  465 GDEVIASAAEVRIEAFACNSAGPTSVLLASLSNSILLMMRIDAGGKILRRWLLEWSVQGKIRGLCISHDLQCVLCVTDQL-AVYILPIDDL 734
            G E  A+A  V IE FA  + G  ++L+ASLSNS LL++RI + G  +R WLL+W V GKIRG+C+S DLQCVLC T+ L  VY+L +D+L
Sbjct:   15 GGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRIGSDG--IRSWLLDWPVAGKIRGMCVSPDLQCVLCATEGLEGVYLLAVDNL 103
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BLAST of mRNA_D-mesarthrocarpus_Contig10510.2.1 vs. uniprot
Match: A0A6H5KV72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV72_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.030e-16
Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = 3 
Query:  432 FSMSGQSEGLHGDEVIASAAEVRIEAFACNSAGPTSVLLASLSNSILLMMRIDAGGKILRRWLLEWSVQGKIRGLCISHDLQCVLCVTDQL-AVYILPIDDL 734
            FS S   EG  G E  A+A  V IE FA  + G  ++L+ASLSNS LL++RI  G   +R WLL+W V GKIRG+C+S DLQCVLC T+ L  VY+L +D+L
Sbjct:    6 FSASSFREG--GGEQEAAAKNVGIEVFAHGALGTDALLVASLSNSALLILRI--GSDCIRSWLLDWPVAGKIRGMCVSPDLQCVLCATEGLEGVYLLAVDNL 103
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10510.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LR68_ECTSI4.360e-1753.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV72_9PHAE1.030e-1652.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10510contigD-mesarthrocarpus_Contig10510:1954..3565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1058
Hectar predicted targeting categorymitochondrion
Exons3
Cds size786
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.0771847-UTR-D-mesarthrocarpus_Contig10510:1953..22251680789188.0771847-UTR-D-mesarthrocarpus_Contig10510:1953..2225Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10510 1954..2225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.0893822-CDS-D-mesarthrocarpus_Contig10510:2225..24261680789188.0893822-CDS-D-mesarthrocarpus_Contig10510:2225..2426Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10510 2226..2426 +
1680789188.0980837-CDS-D-mesarthrocarpus_Contig10510:2575..27461680789188.0980837-CDS-D-mesarthrocarpus_Contig10510:2575..2746Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10510 2576..2746 +
1680789188.1087554-CDS-D-mesarthrocarpus_Contig10510:3151..35651680789188.1087554-CDS-D-mesarthrocarpus_Contig10510:3151..3565Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10510 3152..3565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10510.2.1prot_D-mesarthrocarpus_Contig10510.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10510 2226..3565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10510.2.1

>prot_D-mesarthrocarpus_Contig10510.2.1 ID=prot_D-mesarthrocarpus_Contig10510.2.1|Name=mRNA_D-mesarthrocarpus_Contig10510.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=262bp
MSTSQLVRLASMRTVRRRSPRSLPDHGSHTLPRAGSGSGVSSAGPKWMKT
VTGFSMSGQSEGLHGDEVIASAAEVRIEAFACNSAGPTSVLLASLSNSIL
LMMRIDAGGKILRRWLLEWSVQGKIRGLCISHDLQCVLCVTDQLAVYILP
IDDLEGNISGQGVGSSSGTESSAGPSPDTPNAKANNVDSNAKSNTNSSGS
GGGKGGAINGRCPGAARAGGTGSGARGSQPQRVGKVMTSTSLLRLASRGH
RKQPRGGARATG
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mRNA from alignment at D-mesarthrocarpus_Contig10510:1954..3565+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10510.2.1 ID=mRNA_D-mesarthrocarpus_Contig10510.2.1|Name=mRNA_D-mesarthrocarpus_Contig10510.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1612bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10510:1954..3565+ (Discosporangium mesarthrocarpum MT17_79)
ATAAACTTCCGGCGATGTTAGGTAGATACATTATGTGTGCCTATGTGACA
AGGAATGGAAGAACGCCTGTAATTTATTTGAACGCCCCGATGTGTTTGTT
TTTGGATGCTGTGTTGCACCCTGAGACTTTCACGTGAGGAACTTCAACTC
TGTAGCCCTAAGGTCGATGATTTGGACTTAGTATACTCAGTTAACGCTTA
ATGTATTCCACTAGTATCAGATAACAAGCCACGGTAAGGGAAAGCCTTGA
GAGCAGTGAGAAAGGCTGGGTCATGTCGACTTCTCAGCTTGTGCGCCTTG
CGAGCATGAGGACGGTCCGACGCCGTTCCCCGAGGTCCCTTCCCGATCAT
GGTTCTCACACCCTGCCGAGGGCAGGATCGGGAAGCGGTGTGTCTTCTGC
AGGGCCGAAGTGGATGAAAACCGTCACCGGCTTTTCTATGTCTGGTCAAA
GTGAGGGCCTTCACGGGGATGAGGTGAGGGTTCACTGCGACCTCGATTTT
TTCTCGGGGAGCTCTTTCAGACATTCCTCTAACCGCTTTGGGCTGGTGTT
CTCCCTTAACTTCTGCCAAGGGGACCCTTCCAATGAGCTAGCCCTCCTTC
CCCATCCTCCTTACACCTTGAGGTCATCGCTTCCGCGGCAGAGGTGCGCA
TCGAGGCGTTCGCCTGCAATTCGGCAGGGCCGACATCCGTCCTTCTGGCC
TCCCTATCGAACTCGATCCTCCTGATGATGCGAATTGATGCTGGAGGAAA
GATTCTTCGTCGCTGGCTGCTGGAATGGAGTGTCCAGGGAAAGGTAATTT
TTTACCTTGCATTGACGATATTCTGCGAACCTTGGGGATCTGTCTATCGC
CTTTTCTGCGCCTCATTGTTCGAATTGCAGGTGGACCGCTGTTGACGAGG
TGTCATCCAAGAGGTGGCTCGGTGTAGACACTTCTCTCTCAAGGCAGTCA
ACCACAGGCGAAGCCGGACGCCTCTAGGACAGATTTGATGGCCTCTGAAT
GAAGGCCACGCGACAACATTTTTGAACACCCCAAGAAGAATAGTTGCGGG
CGACCGAGACCATACTTCACTGTCCCAGAAACCCGCTCCTGTTCACCCGC
CAGCTCACCGGAAAATACCCACATCCCGGGCGGATGCGCGGACCTCACTC
AAACACTCCCCTCCCCTGCCCTGTCCCCCGACCTGGCCTCTAACCCAGAT
CCGGGGGCTGTGCATCAGTCACGACCTCCAGTGCGTTCTCTGTGTCACTG
ACCAGCTCGCGGTCTACATTTTGCCTATCGACGACCTCGAGGGCAATATT
TCTGGCCAAGGTGTCGGCAGCAGCAGTGGCACAGAGTCCAGCGCTGGGCC
CAGCCCAGACACCCCTAATGCTAAGGCCAACAATGTCGATAGCAATGCTA
AGAGCAACACGAATAGCAGCGGCAGTGGTGGGGGGAAGGGTGGTGCCATC
AACGGCAGATGCCCTGGGGCCGCCAGGGCAGGTGGAACCGGCTCTGGGGC
GCGTGGGAGCCAACCGCAGCGGGTCGGGAAGGTCATGACCTCGACCAGCC
TCCTGCGCCTGGCAAGTCGTGGTCATCGGAAGCAGCCCAGGGGTGGGGCC
AGGGCCACAGGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10510:1954..3565+

>mRNA_D-mesarthrocarpus_Contig10510.2.1 ID=mRNA_D-mesarthrocarpus_Contig10510.2.1|Name=mRNA_D-mesarthrocarpus_Contig10510.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=786bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10510:1954..3565+ (Discosporangium mesarthrocarpum MT17_79)
ATGTCGACTTCTCAGCTTGTGCGCCTTGCGAGCATGAGGACGGTCCGACG
CCGTTCCCCGAGGTCCCTTCCCGATCATGGTTCTCACACCCTGCCGAGGG
CAGGATCGGGAAGCGGTGTGTCTTCTGCAGGGCCGAAGTGGATGAAAACC
GTCACCGGCTTTTCTATGTCTGGTCAAAGTGAGGGCCTTCACGGGGATGA
GGTCATCGCTTCCGCGGCAGAGGTGCGCATCGAGGCGTTCGCCTGCAATT
CGGCAGGGCCGACATCCGTCCTTCTGGCCTCCCTATCGAACTCGATCCTC
CTGATGATGCGAATTGATGCTGGAGGAAAGATTCTTCGTCGCTGGCTGCT
GGAATGGAGTGTCCAGGGAAAGATCCGGGGGCTGTGCATCAGTCACGACC
TCCAGTGCGTTCTCTGTGTCACTGACCAGCTCGCGGTCTACATTTTGCCT
ATCGACGACCTCGAGGGCAATATTTCTGGCCAAGGTGTCGGCAGCAGCAG
TGGCACAGAGTCCAGCGCTGGGCCCAGCCCAGACACCCCTAATGCTAAGG
CCAACAATGTCGATAGCAATGCTAAGAGCAACACGAATAGCAGCGGCAGT
GGTGGGGGGAAGGGTGGTGCCATCAACGGCAGATGCCCTGGGGCCGCCAG
GGCAGGTGGAACCGGCTCTGGGGCGCGTGGGAGCCAACCGCAGCGGGTCG
GGAAGGTCATGACCTCGACCAGCCTCCTGCGCCTGGCAAGTCGTGGTCAT
CGGAAGCAGCCCAGGGGTGGGGCCAGGGCCACAGGA
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