mRNA_D-mesarthrocarpus_Contig10502.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10502.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig10502.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10502.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10502contigD-mesarthrocarpus_Contig10502:3339..3881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size544
Hectar predicted targeting categorysignal anchor
Exons1
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.2464516-UTR-D-mesarthrocarpus_Contig10502:3338..34731680789187.2464516-UTR-D-mesarthrocarpus_Contig10502:3338..3473Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10502 3339..3473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.2609434-CDS-D-mesarthrocarpus_Contig10502:3473..38811680789187.2609434-CDS-D-mesarthrocarpus_Contig10502:3473..3881Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10502 3474..3881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10502.4.1prot_D-mesarthrocarpus_Contig10502.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10502 3474..3881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10502.4.1

>prot_D-mesarthrocarpus_Contig10502.4.1 ID=prot_D-mesarthrocarpus_Contig10502.4.1|Name=mRNA_D-mesarthrocarpus_Contig10502.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=136bp
GECGGGDDCKGRQESSRRGELISFVFLFSYPFFFSFYLFLFCCPCTAVLV
TRHRAVLVAIHIKCCTCYFVVLPCCSELLLVWELLLTLTLGLGLALKFPI
WCSSLFLLCFASLLCYAMRGGHHHPRGTGKDKKRG*
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mRNA from alignment at D-mesarthrocarpus_Contig10502:3339..3881-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10502.4.1 ID=mRNA_D-mesarthrocarpus_Contig10502.4.1|Name=mRNA_D-mesarthrocarpus_Contig10502.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=543bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10502:3339..3881- (Discosporangium mesarthrocarpum MT17_79)
GGGGAATGCGGGGGTGGCGATGATTGCAAGGGGAGACAAGAGAGCTCACG
CAGAGGTGAGCTCATATCATTTGTTTTTCTTTTTTCTTATCCTTTTTTCT
TTTCCTTTTATCTTTTTCTTTTTTGTTGCCCCTGCACAGCAGTTTTAGTC
ACAAGGCACAGGGCTGTATTGGTAGCAATACACATCAAGTGCTGTACGTG
CTACTTTGTAGTTTTGCCATGCTGCAGCGAACTCCTCCTGGTCTGGGAGC
TCCTGCTGACCCTAACCCTAGGCCTTGGGCTGGCCCTTAAATTCCCCATA
TGGTGCAGTAGTTTGTTTCTCTTGTGCTTTGCCTCACTGCTGTGCTATGC
TATGCGCGGTGGTCACCACCACCCCCGTGGCACAGGGAAAGACAAGAAGA
GAGGATAGATTATGACAATGAAGCGCCTTTACTTTACGAATCAACACAAG
GTGTATTCATCCCTGTAGTGGTCATCGATTGCCACGAGTCTGCAGAGCAG
CCCATTCGAAGCAAAGCAGTACAAATGGTGCGTGACAATGCTC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10502:3339..3881-

>mRNA_D-mesarthrocarpus_Contig10502.4.1 ID=mRNA_D-mesarthrocarpus_Contig10502.4.1|Name=mRNA_D-mesarthrocarpus_Contig10502.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=408bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10502:3339..3881- (Discosporangium mesarthrocarpum MT17_79)
GGGGAATGCGGGGGTGGCGATGATTGCAAGGGGAGACAAGAGAGCTCACG
CAGAGGTGAGCTCATATCATTTGTTTTTCTTTTTTCTTATCCTTTTTTCT
TTTCCTTTTATCTTTTTCTTTTTTGTTGCCCCTGCACAGCAGTTTTAGTC
ACAAGGCACAGGGCTGTATTGGTAGCAATACACATCAAGTGCTGTACGTG
CTACTTTGTAGTTTTGCCATGCTGCAGCGAACTCCTCCTGGTCTGGGAGC
TCCTGCTGACCCTAACCCTAGGCCTTGGGCTGGCCCTTAAATTCCCCATA
TGGTGCAGTAGTTTGTTTCTCTTGTGCTTTGCCTCACTGCTGTGCTATGC
TATGCGCGGTGGTCACCACCACCCCCGTGGCACAGGGAAAGACAAGAAGA
GAGGATAG
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