mRNA_D-mesarthrocarpus_Contig10502.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10502.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10502.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10502.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10502contigD-mesarthrocarpus_Contig10502:2625..3189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size567
Hectar predicted targeting categoryother localisation
Exons1
Cds size564
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.192918-CDS-D-mesarthrocarpus_Contig10502:2624..31881680789187.192918-CDS-D-mesarthrocarpus_Contig10502:2624..3188Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10502 2625..3188 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.2122455-UTR-D-mesarthrocarpus_Contig10502:3188..31891680789187.2122455-UTR-D-mesarthrocarpus_Contig10502:3188..3189Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10502 3189..3189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10502.3.1prot_D-mesarthrocarpus_Contig10502.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10502 2625..3188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10502.3.1

>prot_D-mesarthrocarpus_Contig10502.3.1 ID=prot_D-mesarthrocarpus_Contig10502.3.1|Name=mRNA_D-mesarthrocarpus_Contig10502.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=188bp
MPTVLYALYWSALINSRPHATSAGKKKNESMIQGSYIVVCRSVSAFHVQT
SGTYSPLHHISIDVCKAVDHHRISDVISCWTVDLRWISGIYNLLKNTSEE
TVDLRWISRIYNLLKNTSEETVDLRWISGIYNLPKNTSEETVVPRRCRTS
TGYENPCQNIHIRIYICVRVHIMCLVLHRIFETRVRKQ
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10502:2625..3189-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10502.3.1 ID=mRNA_D-mesarthrocarpus_Contig10502.3.1|Name=mRNA_D-mesarthrocarpus_Contig10502.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=565bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10502:2625..3189- (Discosporangium mesarthrocarpum MT17_79)
AATGCCTACTGTGCTGTATGCGCTGTACTGGTCTGCACTGATAAATTCAC
GCCCTCATGCGACGAGTGCAGGAAAAAAAAAAAACGAGAGTATGATCCAA
GGGTCATACATTGTTGTATGTAGGAGTGTGAGCGCATTTCACGTGCAAAC
TAGTGGAACGTATTCGCCACTACATCATATATCCATCGATGTTTGCAAAG
CCGTCGACCATCATCGGATATCCGATGTCATCTCGTGTTGGACGGTTGAC
CTGCGTTGGATCTCCGGGATATATAACCTCCTGAAAAACACTTCTGAAGA
GACCGTTGACCTGCGTTGGATCTCCAGGATATATAACCTCCTGAAAAACA
CTTCTGAAGAAACCGTTGACCTGCGTTGGATCTCCGGGATATATAACCTC
CCGAAAAACACTTCGGAAGAGACGGTTGTCCCTAGGCGGTGTCGTACTTC
TACTGGGTATGAGAACCCATGTCAGAACATACATATCAGAATATATATAT
GTGTCAGAGTACACATAATGTGCTTGGTACTGCATCGGATCTTTGAGACG
CGTGTTCGGAAGCAA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10502:2625..3189-

>mRNA_D-mesarthrocarpus_Contig10502.3.1 ID=mRNA_D-mesarthrocarpus_Contig10502.3.1|Name=mRNA_D-mesarthrocarpus_Contig10502.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=564bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10502:2625..3189- (Discosporangium mesarthrocarpum MT17_79)
ATGCCTACTGTGCTGTATGCGCTGTACTGGTCTGCACTGATAAATTCACG
CCCTCATGCGACGAGTGCAGGAAAAAAAAAAAACGAGAGTATGATCCAAG
GGTCATACATTGTTGTATGTAGGAGTGTGAGCGCATTTCACGTGCAAACT
AGTGGAACGTATTCGCCACTACATCATATATCCATCGATGTTTGCAAAGC
CGTCGACCATCATCGGATATCCGATGTCATCTCGTGTTGGACGGTTGACC
TGCGTTGGATCTCCGGGATATATAACCTCCTGAAAAACACTTCTGAAGAG
ACCGTTGACCTGCGTTGGATCTCCAGGATATATAACCTCCTGAAAAACAC
TTCTGAAGAAACCGTTGACCTGCGTTGGATCTCCGGGATATATAACCTCC
CGAAAAACACTTCGGAAGAGACGGTTGTCCCTAGGCGGTGTCGTACTTCT
ACTGGGTATGAGAACCCATGTCAGAACATACATATCAGAATATATATATG
TGTCAGAGTACACATAATGTGCTTGGTACTGCATCGGATCTTTGAGACGC
GTGTTCGGAAGCAA
back to top