mRNA_D-mesarthrocarpus_Contig10500.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10500.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10500.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10500.1.1 vs. uniprot
Match: A0A6H5K0L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.640e-19
Identity = 45/66 (68.18%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 LSAHVQVMGDQAVADPSKIEALVQGQVRQRQSNHEARNLAAKLTPEERREKKKRKLQEDTNKDLQV 198
            +S  +QV+GDQAV DPSK+EALV GQV +R++ HEARN AAKLTP+E+R+K+KRKL EDT+K+LQV
Sbjct:   43 MSNFMQVLGDQAVVDPSKVEALVMGQVHRRKAEHEARNQAAKLTPQEKRDKRKRKLLEDTSKELQV 108
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BLAST of mRNA_D-mesarthrocarpus_Contig10500.1.1 vs. uniprot
Match: D7FK64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK64_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.050e-18
Identity = 45/66 (68.18%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 LSAHVQVMGDQAVADPSKIEALVQGQVRQRQSNHEARNLAAKLTPEERREKKKRKLQEDTNKDLQV 198
            +S  +QV+GDQAV DPSK+EALV GQV +R++ HEARN AAKLTP+E+R+K+KRKL EDT+K+LQV
Sbjct:  451 MSNFMQVLGDQAVVDPSKVEALVMGQVHRRKAEHEARNQAAKLTPQEKRDKRKRKLLEDTSKELQV 516
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BLAST of mRNA_D-mesarthrocarpus_Contig10500.1.1 vs. uniprot
Match: A0A7S3JYS4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYS4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.650e-14
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 LSAHVQVMGDQAVADPSKIEALVQGQVRQRQSNHEARNLAAKLTPEERREKKKRKLQEDTNKDLQV 198
            LS  +QV+G QAVADP+K+EA V  QV QR  NHE RN A KLTP+ER++K++RKLQEDT+  ++V
Sbjct:  365 LSNFMQVLGQQAVADPTKLEAKVMAQVNQRLLNHEMRNAARKLTPQERKDKRRRKLQEDTSNGVEV 430
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BLAST of mRNA_D-mesarthrocarpus_Contig10500.1.1 vs. uniprot
Match: A0A812VZV1_SYMMI (PRPF3 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VZV1_SYMMI)

HSP 1 Score: 70.9 bits (172), Expect = 1.790e-14
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   28 DQAVADPSKIEALVQGQVRQRQSNHEARNLAAKLTPEERREKKKRKLQEDTNKDLQV 198
            DQAVADPSK+E  V  Q++QRQ NHE RN A KLTP ER+EKK++KLQEDT++ + V
Sbjct:    1 DQAVADPSKVEKRVMEQMQQRQLNHEMRNQARKLTPAERKEKKRKKLQEDTSRQVHV 57
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BLAST of mRNA_D-mesarthrocarpus_Contig10500.1.1 vs. uniprot
Match: A0A7S2RZ89_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ89_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.070e-14
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 LSAHVQVMGDQAVADPSKIEALVQGQVRQRQSNHEARNLAAKLTPEERREKKKRKLQEDTNKDLQV 198
            L+  ++V+GDQAVADPSKIE  V  QV+QR  NHE RN+A KLTP+ER++KK+RKL EDT++ + V
Sbjct:  334 LANFMKVLGDQAVADPSKIEKKVMEQVQQRVMNHEMRNMAQKLTPQERKDKKRRKLTEDTSRQVVV 399
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BLAST of mRNA_D-mesarthrocarpus_Contig10500.1.1 vs. uniprot
Match: A0A5D6XZ83_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ83_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.760e-14
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 LSAHVQVMGDQAVADPSKIEALVQGQVRQRQSNHEARNLAAKLTPEERREKKKRKLQEDTNKDLQV 198
            LS  ++V+ DQAVADPS IE  V+ QV QR+ NHE RNLA KLTPEERREKK RK++ED   D+ V
Sbjct:  413 LSNMMRVLADQAVADPSAIERKVREQVAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHV 478
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BLAST of mRNA_D-mesarthrocarpus_Contig10500.1.1 vs. uniprot
Match: K3W6M6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6M6_GLOUD)

HSP 1 Score: 74.7 bits (182), Expect = 5.760e-14
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 LSAHVQVMGDQAVADPSKIEALVQGQVRQRQSNHEARNLAAKLTPEERREKKKRKLQEDTNKDLQV 198
            LS  ++V+ DQAVADPS IE  V+ QV QR+ NHE RNLA KLTPEERREKK RK++ED   D+ V
Sbjct:  435 LSNMMRVLADQAVADPSAIERKVRQQVAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHV 500
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BLAST of mRNA_D-mesarthrocarpus_Contig10500.1.1 vs. uniprot
Match: A0A8K1CCE6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCE6_PYTOL)

HSP 1 Score: 74.3 bits (181), Expect = 7.860e-14
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 LSAHVQVMGDQAVADPSKIEALVQGQVRQRQSNHEARNLAAKLTPEERREKKKRKLQEDTNKDLQV 198
            LS  ++V+G+QAVADPS IE  V+ Q+ QR+ NHE RNLA KLTPEERREKK RK++ED   D+ V
Sbjct:  407 LSNMMKVLGEQAVADPSAIERKVRQQMAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHV 472
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BLAST of mRNA_D-mesarthrocarpus_Contig10500.1.1 vs. uniprot
Match: A0A484DQS4_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQS4_BRELC)

HSP 1 Score: 73.9 bits (180), Expect = 1.070e-13
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 LSAHVQVMGDQAVADPSKIEALVQGQVRQRQSNHEARNLAAKLTPEERREKKKRKLQEDTNKDLQV 198
            LS  ++V+ +QAVADPS IE  V+ Q+ QR+ NHE RNLA KLTPEERREK+ RK++ED  KD+ V
Sbjct:  415 LSNMMRVLSEQAVADPSAIERKVREQIAQREKNHEMRNLARKLTPEERREKRLRKIKEDAAKDIYV 480
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BLAST of mRNA_D-mesarthrocarpus_Contig10500.1.1 vs. uniprot
Match: W7TVZ3_9STRA (U4 u6 small nuclear ribonucleoprotein prp3 (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVZ3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.630e-13
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 LSAHVQVMGDQAVADPSKIEALVQGQVRQRQSNHEARNLAAKLTPEERREKKKRKLQEDTNKDLQV 198
            LS  ++V+ ++++ADPS + A +Q Q+R+R+ NHE RNLA KLTPEERREKK+RK+  D  K ++V
Sbjct:   13 LSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEV 78
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10500.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0L2_9PHAE1.640e-1968.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK64_ECTSI1.050e-1868.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3JYS4_9STRA1.650e-1460.61Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A812VZV1_SYMMI1.790e-1464.91PRPF3 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A7S2RZ89_9STRA3.070e-1460.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5D6XZ83_9STRA5.760e-1463.64Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3W6M6_GLOUD5.760e-1463.64Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CCE6_PYTOL7.860e-1462.12Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484DQS4_BRELC1.070e-1360.61Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
W7TVZ3_9STRA1.630e-1353.03U4 u6 small nuclear ribonucleoprotein prp3 (Fragme... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10500contigD-mesarthrocarpus_Contig10500:61..282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FK64
Preferred namePPP1R42
PFAMsDUF1115,LRR_4,LRR_9,PRP3,PWI
Model size222
Max annot lvl2759|Eukaryota
KEGG koko:K12843,ko:K17579
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0002177,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008092,GO:0008150,GO:0008152,GO:0008380,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010921,GO:0015030,GO:0015630,GO:0015631,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019220,GO:0019222,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031326,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0034622,GO:0034641,GO:0035303,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044030,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045292,GO:0046483,GO:0046540,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051128,GO:0051171,GO:0051174,GO:0051252,GO:0051336,GO:0060255,GO:0060968,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070840,GO:0071005,GO:0071011,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902275,GO:1903506,GO:1990904,GO:2000112,GO:2001141
Exons1
Evalue3.98e-18
EggNOG OGsKOG2769@1|root,KOG2769@2759|Eukaryota
DescriptionmRNA splicing, via spliceosome
Cds size201
COG categoryS
BRITEko00000,ko00001,ko00002,ko01009,ko03041,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.0133963-CDS-D-mesarthrocarpus_Contig10500:60..2611680789187.0133963-CDS-D-mesarthrocarpus_Contig10500:60..261Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10500 61..261 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.0290277-UTR-D-mesarthrocarpus_Contig10500:261..2821680789187.0290277-UTR-D-mesarthrocarpus_Contig10500:261..282Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10500 262..282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10500.1.1prot_D-mesarthrocarpus_Contig10500.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10500 61..261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10500.1.1

>prot_D-mesarthrocarpus_Contig10500.1.1 ID=prot_D-mesarthrocarpus_Contig10500.1.1|Name=mRNA_D-mesarthrocarpus_Contig10500.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=67bp
MGDQAVADPSKIEALVQGQVRQRQSNHEARNLAAKLTPEERREKKKRKLQ
EDTNKDLQVGGGGGVN*
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mRNA from alignment at D-mesarthrocarpus_Contig10500:61..282-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10500.1.1 ID=mRNA_D-mesarthrocarpus_Contig10500.1.1|Name=mRNA_D-mesarthrocarpus_Contig10500.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=222bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10500:61..282- (Discosporangium mesarthrocarpum MT17_79)
CTGTCGGCACACGTGCAGGTGATGGGGGACCAGGCTGTGGCAGACCCATC
GAAGATCGAGGCCCTGGTGCAGGGTCAGGTGAGGCAACGGCAAAGCAACC
ATGAGGCCCGAAATCTTGCTGCCAAGCTCACCCCAGAGGAGAGGCGGGAG
AAGAAGAAGCGCAAGCTGCAGGAGGACACCAACAAGGACCTGCAGGTGGG
GGGGGGGGGGGGGGTTAATTAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10500:61..282-

>mRNA_D-mesarthrocarpus_Contig10500.1.1 ID=mRNA_D-mesarthrocarpus_Contig10500.1.1|Name=mRNA_D-mesarthrocarpus_Contig10500.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=201bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10500:61..282- (Discosporangium mesarthrocarpum MT17_79)
ATGGGGGACCAGGCTGTGGCAGACCCATCGAAGATCGAGGCCCTGGTGCA
GGGTCAGGTGAGGCAACGGCAAAGCAACCATGAGGCCCGAAATCTTGCTG
CCAAGCTCACCCCAGAGGAGAGGCGGGAGAAGAAGAAGCGCAAGCTGCAG
GAGGACACCAACAAGGACCTGCAGGTGGGGGGGGGGGGGGGGGTTAATTA
A
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