mRNA_D-mesarthrocarpus_Contig105.11.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig105.11.1
Unique NamemRNA_D-mesarthrocarpus_Contig105.11.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig105.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig105contigD-mesarthrocarpus_Contig105:42749..43691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size515
Hectar predicted targeting categorychloroplast
Exons2
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789186.092185-CDS-D-mesarthrocarpus_Contig105:42748..432051680789186.092185-CDS-D-mesarthrocarpus_Contig105:42748..43205Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig105 42749..43205 +
1680789186.1051064-CDS-D-mesarthrocarpus_Contig105:43633..436891680789186.1051064-CDS-D-mesarthrocarpus_Contig105:43633..43689Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig105 43634..43689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig105.11.1prot_D-mesarthrocarpus_Contig105.11.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig105 42749..43689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig105.11.1

>prot_D-mesarthrocarpus_Contig105.11.1 ID=prot_D-mesarthrocarpus_Contig105.11.1|Name=mRNA_D-mesarthrocarpus_Contig105.11.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=171bp
TNSRALCWLRQIRNAMSAGRSLGLSLLGLCLVGSGAFVSVRPLPALQNGS
VTRTRSLLRFRGVTISARCSLMSLCARRYEKDSSIKPVRRRPTTGVCPVH
VDELSHLVPEKIDQGKCTLSRDAATVPSVALTVAAVTASALLAPEMAHAA
MTDSPGAQHSPSVNLFADALS
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mRNA from alignment at D-mesarthrocarpus_Contig105:42749..43691+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig105.11.1 ID=mRNA_D-mesarthrocarpus_Contig105.11.1|Name=mRNA_D-mesarthrocarpus_Contig105.11.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=943bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig105:42749..43691+ (Discosporangium mesarthrocarpum MT17_79)
ACAAACTCACGCGCACTGTGTTGGTTGCGACAAATCAGGAACGCCATGAG
TGCCGGAAGGAGTCTAGGGTTGTCCTTATTAGGATTATGCCTTGTAGGAA
GTGGGGCATTCGTCTCAGTTAGGCCTCTTCCAGCCTTGCAGAACGGATCC
GTCACAAGGACTCGGTCATTGTTACGATTCAGGGGGGTGACGATATCTGC
TCGTTGTTCGTTGATGTCCTTGTGCGCGAGAAGGTATGAGAAAGACTCAT
CGATCAAACCTGTGAGACGTAGGCCTACAACGGGGGTCTGCCCCGTTCAT
GTGGACGAATTGAGCCATCTTGTACCAGAGAAGATAGATCAAGGGAAGTG
CACCCTCTCACGAGACGCAGCAACCGTGCCGTCGGTGGCACTCACCGTGG
CGGCTGTTACTGCTTCTGCGCTCCTCGCTCCTGAAATGGCTCACGCTGCG
ATGACAGGTCTGATTAGTGTGGAAACAGCTGCGTTTGTGCTGAAGCATTC
TTAACTCTCGCGAAGGGTCAGAGAGCACCTTAGTCACCGAGGGGATCACA
TACGCAGCCTATGCAACGTTGTCCACCAAGGACTTCCTTCGTCCGGGGAT
AAACATTCCCCCCCGAGCAGTACTTCTTCCATCTGAAAATTCGGGAAATG
TAATGAAAAAGTCAAGTTGTCACATGCCCTTCGGCATTGCGTTATGTTGC
GGCAGACAGAGCAGCCAGGTCCAACAACCAACAAATCCCGATGAAAAAGG
GTTAGGGTTGTAGACACCCTCAAGTCGGTTAGATGCGCGAGCAAAATCGC
TATGTGCTACCTACGGCAAGATTGATCGATCGTCCACCATGAGAAACGCG
CGTGTCCCCTGATATGAATTGTTTTCCTGAACCAGACTCACCGGGAGCGC
AGCATTCCCCATCTGTGAACCTGTTCGCAGACGCCCTCTCGGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig105:42749..43691+

>mRNA_D-mesarthrocarpus_Contig105.11.1 ID=mRNA_D-mesarthrocarpus_Contig105.11.1|Name=mRNA_D-mesarthrocarpus_Contig105.11.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=513bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig105:42749..43691+ (Discosporangium mesarthrocarpum MT17_79)
ACAAACTCACGCGCACTGTGTTGGTTGCGACAAATCAGGAACGCCATGAG
TGCCGGAAGGAGTCTAGGGTTGTCCTTATTAGGATTATGCCTTGTAGGAA
GTGGGGCATTCGTCTCAGTTAGGCCTCTTCCAGCCTTGCAGAACGGATCC
GTCACAAGGACTCGGTCATTGTTACGATTCAGGGGGGTGACGATATCTGC
TCGTTGTTCGTTGATGTCCTTGTGCGCGAGAAGGTATGAGAAAGACTCAT
CGATCAAACCTGTGAGACGTAGGCCTACAACGGGGGTCTGCCCCGTTCAT
GTGGACGAATTGAGCCATCTTGTACCAGAGAAGATAGATCAAGGGAAGTG
CACCCTCTCACGAGACGCAGCAACCGTGCCGTCGGTGGCACTCACCGTGG
CGGCTGTTACTGCTTCTGCGCTCCTCGCTCCTGAAATGGCTCACGCTGCG
ATGACAGACTCACCGGGAGCGCAGCATTCCCCATCTGTGAACCTGTTCGC
AGACGCCCTCTCG
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