mRNA_D-mesarthrocarpus_Contig10492.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10492.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10492.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10492.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10492contigD-mesarthrocarpus_Contig10492:1860..2200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size341
Hectar predicted targeting categorysignal peptide
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.939404-CDS-D-mesarthrocarpus_Contig10492:1859..21981680789185.939404-CDS-D-mesarthrocarpus_Contig10492:1859..2198Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10492 1860..2198 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.9526875-UTR-D-mesarthrocarpus_Contig10492:2198..22001680789185.9526875-UTR-D-mesarthrocarpus_Contig10492:2198..2200Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10492 2199..2200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10492.1.1prot_D-mesarthrocarpus_Contig10492.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10492 1860..2198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10492.1.1

>prot_D-mesarthrocarpus_Contig10492.1.1 ID=prot_D-mesarthrocarpus_Contig10492.1.1|Name=mRNA_D-mesarthrocarpus_Contig10492.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=113bp
MAPLFGAWIMPIISFGYWARWMPSGRSVGGATALLVFVQVATCLLVSSFT
LPTASRSWVLHSRNEGPLSPSSSWFRRPTASVPISPDGEARRAQWRSRLE
AERTGGVRRPLR*
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mRNA from alignment at D-mesarthrocarpus_Contig10492:1860..2200-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10492.1.1 ID=mRNA_D-mesarthrocarpus_Contig10492.1.1|Name=mRNA_D-mesarthrocarpus_Contig10492.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=341bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10492:1860..2200- (Discosporangium mesarthrocarpum MT17_79)
GCATGGCTCCCCTTTTTGGAGCCTGGATCATGCCCATCATTTCCTTCGGG
TATTGGGCAAGGTGGATGCCCTCCGGTCGCTCTGTGGGGGGAGCAACAGC
CTTGTTGGTGTTCGTTCAGGTTGCCACCTGTTTGCTGGTATCGTCTTTTA
CCCTCCCGACTGCCAGCCGTTCGTGGGTCTTGCACAGTAGGAATGAGGGA
CCATTGAGTCCCTCATCGTCATGGTTTCGTCGCCCCACGGCATCTGTGCC
CATCTCACCTGATGGAGAGGCTAGGAGAGCCCAGTGGAGGTCGCGACTCG
AGGCAGAAAGGACGGGCGGGGTACGCAGACCGCTAAGGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10492:1860..2200-

>mRNA_D-mesarthrocarpus_Contig10492.1.1 ID=mRNA_D-mesarthrocarpus_Contig10492.1.1|Name=mRNA_D-mesarthrocarpus_Contig10492.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=339bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10492:1860..2200- (Discosporangium mesarthrocarpum MT17_79)
ATGGCTCCCCTTTTTGGAGCCTGGATCATGCCCATCATTTCCTTCGGGTA
TTGGGCAAGGTGGATGCCCTCCGGTCGCTCTGTGGGGGGAGCAACAGCCT
TGTTGGTGTTCGTTCAGGTTGCCACCTGTTTGCTGGTATCGTCTTTTACC
CTCCCGACTGCCAGCCGTTCGTGGGTCTTGCACAGTAGGAATGAGGGACC
ATTGAGTCCCTCATCGTCATGGTTTCGTCGCCCCACGGCATCTGTGCCCA
TCTCACCTGATGGAGAGGCTAGGAGAGCCCAGTGGAGGTCGCGACTCGAG
GCAGAAAGGACGGGCGGGGTACGCAGACCGCTAAGGTGA
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