mRNA_D-mesarthrocarpus_Contig10487.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10487.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10487.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10487.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10487contigD-mesarthrocarpus_Contig10487:1884..2849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FP39
PFAMsTyr-DNA_phospho
Model size476
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000295
EggNOG OGs2E1MX@1|root,2S8Y8@2759|Eukaryota
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.6401172-UTR-D-mesarthrocarpus_Contig10487:1883..20871680789185.6401172-UTR-D-mesarthrocarpus_Contig10487:1883..2087Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10487 1884..2087 -
1680789185.6735184-UTR-D-mesarthrocarpus_Contig10487:2805..28491680789185.6735184-UTR-D-mesarthrocarpus_Contig10487:2805..2849Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10487 2806..2849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789185.6516266-CDS-D-mesarthrocarpus_Contig10487:2087..21841680789185.6516266-CDS-D-mesarthrocarpus_Contig10487:2087..2184Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10487 2088..2184 -
1680789185.661676-CDS-D-mesarthrocarpus_Contig10487:2674..28051680789185.661676-CDS-D-mesarthrocarpus_Contig10487:2674..2805Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10487 2675..2805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10487.1.1prot_D-mesarthrocarpus_Contig10487.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10487 2088..2805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10487.1.1

>prot_D-mesarthrocarpus_Contig10487.1.1 ID=prot_D-mesarthrocarpus_Contig10487.1.1|Name=mRNA_D-mesarthrocarpus_Contig10487.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=76bp
MEYVALPVPFYLDSEGYAVRHGPSSSPHVRFLPSMHDLEPEGPRSAEVIK
LLASEEVESQFSSTSTHPSSKGHTE*
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mRNA from alignment at D-mesarthrocarpus_Contig10487:1884..2849-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10487.1.1 ID=mRNA_D-mesarthrocarpus_Contig10487.1.1|Name=mRNA_D-mesarthrocarpus_Contig10487.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=966bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10487:1884..2849- (Discosporangium mesarthrocarpum MT17_79)
GGGGAGGTGGGGGAGGTGGGTGTGGTGGGTGCAAGCCTGTCAAGATGGAA
TATGTGGCCCTCCCGGTGCCCTTCTACCTGGACAGCGAGGGCTATGCAGT
CCGCCACGGGCCCAGTTCTTCACCGCATGTGCGGTTCCTTCCCTCCATGC
ACGACCTCGAGCCTGAAGGACCAAGGTTCGGCAAGAACAGAAGTGAAACT
GTTTACAAGACTCAGAAAAAAGTACCGATGAAGGAGAGGTGTTGATCTAA
TGCGGAGGTCTCTTGTTTGATTTTCTCTTTTGCCCGCTTCTTCCCCCCCC
CCCCTCCCCTGTTCACCCGTTTCTCCCCCTCTCACCCTCCCTCAAATCTC
ACCGTTGGCGAGGAGCGTCAGGTTCAGAATCAGGGTTTTTGTGTTTGTGT
GTGTGTGTGTGCTGTAAGACCTGTTTTATTCCGGTCTTTGCTACAAGTTT
TTCTTGTGGCTGAAGGGTGCCAACTCAAAGACACTTGTATTATGCGTGCT
TTTGAAGTACGGCAATTAAATTTGCTGTACTATTTTCGCTTCTGGATGAT
AAACGAATGCAATACTCAGTCTAGGCACTTGTCTGATTAGACATGTTGTC
AAGGTTGCTCAAGACGGACAATCAGTGGAACTAATTCAACATTGGAAACA
AATCCTTGAATACAGGTCTGCAGAGGTGATCAAGCTTCTGGCGTCTGAGG
AGGTGGAGAGCCAGTTCTCCAGCACGAGCACCCACCCTAGTTCGAAGGGT
CACACAGAGTAGTTTTAGTACAAAAATGAATAAAAAATAGAAGATAGAGT
GCTATATACTGACAACCACCTTGTCCGTGTTATTCAGAGAGTGTGCACTG
GTACATTAAGCTCAAAGAGTTTGTTGTATCTGAATGCCTGTAGTTTGCAT
TGTTCATCCTGGGGAGGTGAGAAAAAGACTGCGGACGGACGCTAGTCGCA
AGAACTTCCAGTTTTC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10487:1884..2849-

>mRNA_D-mesarthrocarpus_Contig10487.1.1 ID=mRNA_D-mesarthrocarpus_Contig10487.1.1|Name=mRNA_D-mesarthrocarpus_Contig10487.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=228bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10487:1884..2849- (Discosporangium mesarthrocarpum MT17_79)
ATGGAATATGTGGCCCTCCCGGTGCCCTTCTACCTGGACAGCGAGGGCTA
TGCAGTCCGCCACGGGCCCAGTTCTTCACCGCATGTGCGGTTCCTTCCCT
CCATGCACGACCTCGAGCCTGAAGGACCAAGGTCTGCAGAGGTGATCAAG
CTTCTGGCGTCTGAGGAGGTGGAGAGCCAGTTCTCCAGCACGAGCACCCA
CCCTAGTTCGAAGGGTCACACAGAGTAG
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