mRNA_D-mesarthrocarpus_Contig10476.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10476.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10476.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10476.1.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 2.060e-28
Identity = 56/72 (77.78%), Postives = 68/72 (94.44%), Query Frame = 2 
Query:    5 PPSVMLKLHGLVQRATRLSFVLSGPPPPHATTVITNPLVAAALPNSTHLLAGWALLDGWVRLYPLQEKAAHR 220
            PPS+MLK+HGL+QRATRL+FVLSGPPP HA++ ++NPLVAAALPNSTHLLAGWALLDGWV+LYP ++KA H+
Sbjct: 2636 PPSMMLKIHGLLQRATRLAFVLSGPPPAHASS-LSNPLVAAALPNSTHLLAGWALLDGWVKLYPSEDKATHK 2706
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BLAST of mRNA_D-mesarthrocarpus_Contig10476.1.1 vs. uniprot
Match: A0A6H5KJE7_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE7_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.540e-26
Identity = 54/68 (79.41%), Postives = 65/68 (95.59%), Query Frame = 2 
Query:    5 PPSVMLKLHGLVQRATRLSFVLSGPPPPHATTVITNPLVAAALPNSTHLLAGWALLDGWVRLYPLQEK 208
            PPS+MLK+HGL+QRATRL+FVLSGPPP HA++ ++NPLVAAALPNSTHLLAGWALLDGWV+LYP ++K
Sbjct: 2249 PPSMMLKIHGLLQRATRLAFVLSGPPPAHASS-LSNPLVAAALPNSTHLLAGWALLDGWVKLYPSEDK 2315
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BLAST of mRNA_D-mesarthrocarpus_Contig10476.1.1 vs. uniprot
Match: A0A836CI77_9STRA (DENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI77_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.970e-8
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 2 
Query:    2 HPPSVMLKLHGLVQRATRLSFVLSGPPP-PHATTVITNPLV-AAALPNSTHLLAGWALLDGWVRLY------PLQEKAAHR 220
            H PS +++++GL+ R  R+SF+++G PP P      + P+V A+ALPN THLLAGW  LD  VR Y      PLQ   A R
Sbjct: 1888 HSPSTLVRVYGLLSRVVRMSFMMAGTPPVPSLLPSHSFPVVLASALPNHTHLLAGWQYLDSEVRQYQGLTKGPLQSAVAGR 1968
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10476.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYV2_ECTSI2.060e-2877.78PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KJE7_9PHAE1.540e-2679.41DENN domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CI77_9STRA2.970e-845.68DENN domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10476contigD-mesarthrocarpus_Contig10476:957..4038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size563
Hectar predicted targeting categorymitochondrion
Exons5
Cds size546
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10476.1.1prot_D-mesarthrocarpus_Contig10476.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10476 973..4038 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.7669063-UTR-D-mesarthrocarpus_Contig10476:956..9721680789184.7669063-UTR-D-mesarthrocarpus_Contig10476:956..972Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10476 957..972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.7766378-CDS-D-mesarthrocarpus_Contig10476:972..9811680789184.7766378-CDS-D-mesarthrocarpus_Contig10476:972..981Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10476 973..981 +
1680789184.7873404-CDS-D-mesarthrocarpus_Contig10476:1541..17241680789184.7873404-CDS-D-mesarthrocarpus_Contig10476:1541..1724Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10476 1542..1724 +
1680789184.795361-CDS-D-mesarthrocarpus_Contig10476:2369..24621680789184.795361-CDS-D-mesarthrocarpus_Contig10476:2369..2462Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10476 2370..2462 +
1680789184.8034408-CDS-D-mesarthrocarpus_Contig10476:3115..32941680789184.8034408-CDS-D-mesarthrocarpus_Contig10476:3115..3294Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10476 3116..3294 +
1680789184.8124394-CDS-D-mesarthrocarpus_Contig10476:3956..40381680789184.8124394-CDS-D-mesarthrocarpus_Contig10476:3956..4038Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10476 3957..4038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10476.1.1

>prot_D-mesarthrocarpus_Contig10476.1.1 ID=prot_D-mesarthrocarpus_Contig10476.1.1|Name=mRNA_D-mesarthrocarpus_Contig10476.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=182bp
MLKLHGLVQRATRLSFVLSGPPPPHATTVITNPLVAAALPNSTHLLAGWA
LLDGWVRLYPLQEKAAHRRHHRRGGRRRGSSHQATVGGVAAGPSQAMGVA
RGDLSRSDSPPRPTTPMSFVTSSPMAVSSSSLANVSAGSRNGVGSGSDGL
VSGQSDEHMLAHLTPLTKPLVAPNPTRTHQRQ
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mRNA from alignment at D-mesarthrocarpus_Contig10476:957..4038+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10476.1.1 ID=mRNA_D-mesarthrocarpus_Contig10476.1.1|Name=mRNA_D-mesarthrocarpus_Contig10476.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3082bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10476:957..4038+ (Discosporangium mesarthrocarpum MT17_79)
TCACCCGCCCTCAGTCATGCTCAAGGTGTGCAATGTGACATGCAGTGCGA
ATTTTAAATCCTTGCTCTAATGGTAGGGTAGGGGTTGGGGTTAGTCTTCT
GACACTAAGGTAAACCCATAACCCTACAGGTTGGGTAGGATAGCGTTAGG
GTTAGTTTGCTAGTGCTGATGTCAAGCCATAACCCTATCGATTTTCTCAC
TATGGGCCATGGGCCTGACCTGATACTTGAAGAGAATGTCTTTCCCGCTA
GTGTTACACAAAGGACACCTGTTTTTTTAATGCATACCTCTGATTTGAGG
GCCATAGAGGTCTAGGGCTACTATAGAGGTTTGGTGAGGAGGGGTTTAGG
GACTGACAGGTTCCACCTTCTTTTGGGACTAGGAGGGACAAAAAAGATTA
GGTGACTGTTGAATCATGGATAGTGATCTCCCCCCTCCCTGTTGCCAGCA
AAGGATTGCTCTTGAAACGCTAACCCTGAACCCTTAACCCAACTTCAACC
CTATGGCCCAAACCCCAACCCCAACCCCAACCCCAACCCCAACCCCAACC
CCAACTCTGACCCCAATCATTCCCTCCCCCCACAGCTGCATGGGCTGGTC
CAGAGGGCTACAAGGCTGTCGTTTGTGCTCTCAGGTCCCCCCCCTCCCCA
CGCCACCACGGTTATAACAAACCCTCTCGTGGCGGCGGCCCTCCCCAACA
GTACCCACTTGCTTGCTGGCTGGGCACTGCTGGACGGGTGGGTGCGCCTC
TACCCACTCCAGGAGAAGGTACAGAACCCCGCAAGTTAAAGCTAGGGTCA
GGATCAGAGTGACCCTTACCCCAACCCTAGGGCTCAGAGTATGTTCCAAT
TCACAGACTACTGCGCCACCTTGCGTGAGACAGATCAGGGTTAGGGTTAG
GGTTAGAGTTAGGGTTAGGGTTAGGGTTAGGGTTGTGAGCTGTAGGGTAG
GGGTCTTCAGGGTCATGGTTGAGGTTGAGAGGGATGGTCTATTGCTAGAT
AATTGGGTGTACCCTTTCCTCACATGTTCGGGAAGGGTTGGGGTTACCCT
CTCCTGGAAGAGGTATTGGTTACGGTGAGGTTTAGGGGTTAGGGTTAGGG
TTGATGTGTGGGGGTTTTGTAATCAGAGCTCGCGGGATTCAGGATAAGGG
TTCAGGTTTGGGTAAGGTTGGGCAGGCTGATCACAACTCCCAGCATTTGC
AGGGATCGTTTCCCCCGAAACTGAGACTGCAAATGTGCATCGAACCCAAC
CCTAACCCTAACCCTAACCCTAACCCCAATCCTAGCCCTAGTCCTAGGCA
TGCTTAGAGACTTAGCAACGCACACCATGTTTTTGGTCACCCCCCCCTCC
CCCCCCGCCCCCCCATTTGTTGATATATTTTTCTTTTCTTTTTTGTTAAA
ACAAAAAAAACAGGCTGCACATCGTCGGCATCACAGGAGAGGGGGTCGAA
GGAGAGGCTCCAGCCATCAAGCCACTGTAGGAGGCGTCGCCGCTGGCCCT
TCCCAGGCAAGGAGGAGATGAGGGCCAGCTGAAGGGTCGGAGTGGTTTGT
GGGTTGGTCATTGAAGGGAGAGTACACAAGGGAGTTTCTTCGTTTGTTTT
AGGCGTCTATCCACAGCCTCTTTTTGCTCTCTACCTTTTAGAGTAAAAGG
TATGAGATGCCCTGAGGAAACAGTGGCTTCCTTGTCATTGCGTATTTTTG
AGGTTAGCGTTGCAGGATTGTTACGGATGTCCACGAGGCAGAGTGGGGCT
TTCTATTCCCGCCCCATACTGTGCCAATACAAATACCACCACCAATACAT
TGCCAATGCTGATACCGATACTATTACCAGTACCATTACCAGTGCCAGCA
CAAATGCCCATATCCATACCCATGCCCATACAAATACCACCACCAATACA
TCGCCAATGCTGATACCGATACTATTACCAGTACCATTACCAGTGCCAGC
ACAAATGCCCATATCCATACCCATGCCCATACAAATACCACCACCAATAC
ATCGCCAGTGCTGATACCGATACTATAACCAGTACCATTACCAGTGCCAG
CACAAATACCCATACCCATACCCATGCCCATACAAATACCAACACCAACA
ACAATGCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCC
TAACTCCAGGCGATGGGTGTTGCTAGGGGAGACCTTTCTCGCTCGGATTC
TCCACCTAGGCCAACCACGCCCATGAGCTTTGTCACCAGCAGTCCCATGG
CAGTATCCTCATCCTCGCTTGCCAACGTCTCCGCGGGCTCAAGAAACGGG
GTTGGCTCTGGCTCCGACGGGCTGGTGTCCGGTCAAAGGTGACAGTTAGG
ATTAGGGTTAGGGTAAAGGTTGCTCTGGTGGGCCGTCGGGAGGAGGGGCT
CTGAGCGGCACCCCCAGGGGCTGGAGCGATTGTTGTACGCCTCGTTTCAA
GGGTTACGGTTAGGGTTAAGGTCGCTGCAGGGTTAGGGTTATGGCTATGG
AGTAAGGGTTTGGGTTTGTTTTGAAAGCCTCCTGAAGGTAGTGGCTTGGG
GAGTAAACGGTTGAGGGGTTGGGTGTTGATTCAGATTGGGGTTAAGGTTG
CTGGAGGGCTCAGGGTAAGGTTAGGGATAAATAGTTTGGGTTTGGGTTTG
GGTTGAGAACCCCTCCCCCCCCACCCCAAAGCTGATACTCTTGAGAAAGT
GCCCCAGCAGCATTTTTTTTGCCTATTGAATTAAGTCTGTCTGTCACTAG
CACTAACCCTAACCCTTTCCCTCTAGCCGAGAGCATTTTAGAATCCAACT
GGAACCCCCCCAGCAACCCTATAGTCGGAGGGTTAGGGTTAGGCCTAACC
CTAACCCTAGGAGCCTTAACTGTAACCCCATAGTTCTTAAGCAGAGCACA
AACCTCTCCGCCTCACCCCCCCTCTCTCCCCCCCCAAACCCCCCACCCCC
CACCCACCCCCCGTTCTACCCTGTCTTGTGACAATTGATAAATTGATCAG
TGACGAGCACATGCTCGCCCACCTGACGCCCCTGACTAAGCCTCTGGTGG
CGCCAAATCCCACGCGCACCCACCAGAGGCAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10476:957..4038+

>mRNA_D-mesarthrocarpus_Contig10476.1.1 ID=mRNA_D-mesarthrocarpus_Contig10476.1.1|Name=mRNA_D-mesarthrocarpus_Contig10476.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=546bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10476:957..4038+ (Discosporangium mesarthrocarpum MT17_79)
ATGCTCAAGCTGCATGGGCTGGTCCAGAGGGCTACAAGGCTGTCGTTTGT
GCTCTCAGGTCCCCCCCCTCCCCACGCCACCACGGTTATAACAAACCCTC
TCGTGGCGGCGGCCCTCCCCAACAGTACCCACTTGCTTGCTGGCTGGGCA
CTGCTGGACGGGTGGGTGCGCCTCTACCCACTCCAGGAGAAGGCTGCACA
TCGTCGGCATCACAGGAGAGGGGGTCGAAGGAGAGGCTCCAGCCATCAAG
CCACTGTAGGAGGCGTCGCCGCTGGCCCTTCCCAGGCGATGGGTGTTGCT
AGGGGAGACCTTTCTCGCTCGGATTCTCCACCTAGGCCAACCACGCCCAT
GAGCTTTGTCACCAGCAGTCCCATGGCAGTATCCTCATCCTCGCTTGCCA
ACGTCTCCGCGGGCTCAAGAAACGGGGTTGGCTCTGGCTCCGACGGGCTG
GTGTCCGGTCAAAGTGACGAGCACATGCTCGCCCACCTGACGCCCCTGAC
TAAGCCTCTGGTGGCGCCAAATCCCACGCGCACCCACCAGAGGCAG
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