mRNA_D-mesarthrocarpus_Contig10465.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10465.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10465.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10465.1.1 vs. uniprot
Match: A0A432FEB4_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A432FEB4_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 8.660e-6
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 VNAQGPNGNTPLHQAAMGSQANAASILLAHGADPRRRNLFGATPLDLA 144
            VN  G  G TPLHQAA+G     A +L+A GAD   ++ +G TPLDLA
Sbjct:   52 VNTMGDEGETPLHQAALGGHKKVAELLIAKGADLNAKS-YGETPLDLA 98
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10465.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A432FEB4_9BACT8.660e-652.08Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10465contigD-mesarthrocarpus_Contig10465:260..409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7739.XP_002587982.1
Preferred nameOSBPL1A
PFAMsAnk,Ank_2,Ank_4,Ank_5,Oxysterol_BP
Model size150
Max annot lvl33208|Metazoa
KEGG koko:K20174
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003674,GO:0005215,GO:0005319,GO:0005488,GO:0005496,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005829,GO:0006066,GO:0006082,GO:0006629,GO:0006694,GO:0006699,GO:0006810,GO:0006869,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008206,GO:0008289,GO:0008610,GO:0009058,GO:0009987,GO:0010876,GO:0012505,GO:0015248,GO:0015485,GO:0015850,GO:0015918,GO:0016053,GO:0016125,GO:0016192,GO:0019752,GO:0019882,GO:0019884,GO:0019886,GO:0031410,GO:0031982,GO:0032787,GO:0032934,GO:0033036,GO:0036094,GO:0043167,GO:0043168,GO:0043178,GO:0043226,GO:0043227,GO:0043229,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048002,GO:0051179,GO:0051234,GO:0071702,GO:0071704,GO:0072330,GO:0097159,GO:0097708,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652
Exons1
Evalue3.15e-06
EggNOG OGsKOG1737@1|root,KOG2209@2759|Eukaryota,39M84@33154|Opisthokonta,3BI7M@33208|Metazoa,3CSXD@33213|Bilateria,4814Y@7711|Chordata
Descriptioncholesterol binding
Cds size150
COG categoryT
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.1981435-CDS-D-mesarthrocarpus_Contig10465:259..4091680789184.1981435-CDS-D-mesarthrocarpus_Contig10465:259..409Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10465 260..409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10465.1.1prot_D-mesarthrocarpus_Contig10465.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10465 260..409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10465.1.1

>prot_D-mesarthrocarpus_Contig10465.1.1 ID=prot_D-mesarthrocarpus_Contig10465.1.1|Name=mRNA_D-mesarthrocarpus_Contig10465.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=50bp
VNAQGPNGNTPLHQAAMGSQANAASILLAHGADPRRRNLFGATPLDLAPV
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10465:260..409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10465.1.1 ID=mRNA_D-mesarthrocarpus_Contig10465.1.1|Name=mRNA_D-mesarthrocarpus_Contig10465.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=150bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10465:260..409+ (Discosporangium mesarthrocarpum MT17_79)
GTCAATGCCCAGGGCCCCAATGGCAACACGCCCTTGCACCAGGCGGCCAT
GGGGTCACAGGCTAATGCTGCGAGTATCCTCCTTGCCCATGGCGCGGACC
CGCGGAGGAGGAATCTTTTCGGGGCGACACCGCTGGACCTGGCGCCTGTA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10465:260..409+

>mRNA_D-mesarthrocarpus_Contig10465.1.1 ID=mRNA_D-mesarthrocarpus_Contig10465.1.1|Name=mRNA_D-mesarthrocarpus_Contig10465.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=150bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10465:260..409+ (Discosporangium mesarthrocarpum MT17_79)
GTCAATGCCCAGGGCCCCAATGGCAACACGCCCTTGCACCAGGCGGCCAT
GGGGTCACAGGCTAATGCTGCGAGTATCCTCCTTGCCCATGGCGCGGACC
CGCGGAGGAGGAATCTTTTCGGGGCGACACCGCTGGACCTGGCGCCTGTA
back to top