mRNA_D-mesarthrocarpus_Contig10464.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10464.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10464.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10464.2.1 vs. uniprot
Match: D8LS35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS35_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.630e-16
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    1 QVIQKLTSSGPNVVERGDVDWDRRVVAMRSSFLGGFLADARGDLDRRHPTLNVFGARSRDKFFAKLEQGLKVAMS 225
            +VIQKLT+S    +E+G  DWDRRV +MR SFL  F+A+AR  LDR++P+   FGAR+RD+FF KLEQGLKV  S
Sbjct:  650 EVIQKLTAS--TNIEKGAQDWDRRVQSMRGSFLEHFVANARRYLDRKYPSHGPFGARNRDRFFVKLEQGLKVNSS 722
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BLAST of mRNA_D-mesarthrocarpus_Contig10464.2.1 vs. uniprot
Match: D7G4P4_ECTSI (Myosin-like antigen n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P4_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.300e-12
Identity = 57/167 (34.13%), Postives = 80/167 (47.90%), Query Frame = 1 
Query:   52 DVDWDRRVVAMRSSFLGGFLADARGDLDRRHPTLNVFGARSRDKFFAKLEQGLKVAMSKYRSIDVGNTLFGKVKLDPVCIACDRPFGPSAQSTKGNPGAASLDPLPPTTLVKDGMAGRPRSPQTNNPFTALGRATATATSMPQSPLPVTGRKPAGGTKFVYRGGFKI 552
            D DWDR+V  +R  F+  F++D      +  P  +      R+ F  KLE  +K+A+SKY+ I  G T+ GKV L P C+ACDRPF         NPG     P  P ++V+D    R RS +      AL R   + +   +      GR      K+V R GFK+
Sbjct:  255 DSDWDRKVEELRIRFMNKFVSDVVQVASKLRPLPDRPVEEVRETFATKLELSMKLAISKYKPIQAGATILGKVHLLPSCMACDRPF-------IDNPG-----PGDPRSVVQDHRGERERSRER-----ALERGGGSPSGGSRGQWNGGGRD-RSPHKYVMRSGFKM 403
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BLAST of mRNA_D-mesarthrocarpus_Contig10464.2.1 vs. uniprot
Match: A0A7S3JPN6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPN6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.370e-12
Identity = 41/117 (35.04%), Postives = 61/117 (52.14%), Query Frame = 1 
Query:   91 SFLGGFLADARGDLDRRHPTLNVFGARSRDKFFAKLEQGLKVAMSKYRSIDVGNTLFGKVKLDPVCIACDRPFGPSAQSTKGNPGAASLDPLPPTTLVKDGMAGRPRSPQTNNPFTA 441
            S +  F+   R   ++ HPT +     +RD F ++L+ GLKV +SK++ I    TLFGK++L P C+ACDRPF P        PG         T  +K  +   P+SP+ + P  A
Sbjct:    2 SAISKFIVGVRQAANKLHPTTDTKVQSTRDLFLSRLDLGLKVGISKHQKIQPNYTLFGKLRLKPTCVACDRPFAP--------PGL--------TDNLKTSLKSPPKSPKNSYPLQA 102
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BLAST of mRNA_D-mesarthrocarpus_Contig10464.2.1 vs. uniprot
Match: A0A6H5L1L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1L3_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.160e-11
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:   52 DVDWDRRVVAMRSSFLGGFLADARGDLDRRHPTLNVFGARSRDKFFAKLEQGLKVAMSKYRSIDVGNTLFGKVKLDPVCIACDRPF-GPS 318
            D DWDR+V  +R  F+  F++D      +  P  +      R+ F  KLE  +K+A+SKY+ I  G T+ GKV L P C+ACDRPF GP+
Sbjct:  329 DSDWDRKVEELRIRFMNKFVSDVVQVASKLRPLPDRPVEEVRETFATKLELSMKLAISKYKPIQAGATILGKVHLLPSCMACDRPFIGPA 418
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BLAST of mRNA_D-mesarthrocarpus_Contig10464.2.1 vs. uniprot
Match: A0A7S1XP55_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XP55_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.520e-9
Identity = 47/132 (35.61%), Postives = 68/132 (51.52%), Query Frame = 1 
Query:  175 RDKFFAKLEQGLKVAMSKYRSIDVGNTLFGKVKLDPVCIACDRPFGPSAQSTKGNPGAASLDPLPPTTLVKDGMAGRPRSPQTNNPFTALGRATATATSMPQSPLPVTGRKPAG-GTKFVYRGGFKIPRDLT 567
            R K+  K+   LK+AM+KY ++  GNT  G++KL   C+AC+RPF  S  +T G+  + S D LP      D +     S   ++    LG     +   P S +    R  +   +KFV+RGGFKIPR  T
Sbjct:  410 RQKYMDKVLMALKIAMTKYSNVQPGNTFLGRMKLQMSCMACNRPFKES--NTPGDQRSISRDRLPAHGRGDDDL-----SSVRSSASAGLG-----SVHPPGSAMSFGSRGGSSQSSKFVFRGGFKIPRPKT 529
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BLAST of mRNA_D-mesarthrocarpus_Contig10464.2.1 vs. uniprot
Match: A0A7S3USE9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE9_HETAK)

HSP 1 Score: 64.7 bits (156), Expect = 3.730e-9
Identity = 31/87 (35.63%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:   52 DVDWDRRVVAMRSSFLGGFLADARGDLDRRHPTLNVFGARSRDKFFAKLEQGLKVAMSKYRSIDVGNTLFGKVKLD-PVCIACDRPF 309
            D DWD +V  +R  +   F         ++H + +     +R +F AKL+Q +++A+SK+  +  G TLFGK     P C+ACDRPF
Sbjct:  138 DEDWDTKVDQLRQKYRAEFTQGVEAYAAKQHRSGDTVVLDTRRRFLAKLDQAVRLALSKFNKVQPGLTLFGKRSAQVPACMACDRPF 224
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BLAST of mRNA_D-mesarthrocarpus_Contig10464.2.1 vs. uniprot
Match: A0A8J2S9U3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9U3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.500e-7
Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   61 WDRRVVAMRSSFLGGFLADARGDLDRRHPTLNVFGARSRDKFFAKLEQGLKVAMSKYRSIDVGNTLFGKVKLDPVCIACDRPF 309
            WD+++   R+  L  F         + HPT +     +R +F  +L+  L+V +SK+  +    TLFGK KL P C+ACDRPF
Sbjct:  640 WDQQLEKNRARLLRSFCERLDEAAAKLHPTNDHMAEATRRRFNERLKLCLRVGLSKHDPVRPNMTLFGKTKLGPACVACDRPF 722
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10464.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LS35_ECTSI2.630e-1660.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4P4_ECTSI1.300e-1234.13Myosin-like antigen n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S3JPN6_9STRA1.370e-1235.04Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6H5L1L3_9PHAE1.160e-1142.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1XP55_9STRA1.520e-935.61Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3USE9_HETAK3.730e-935.63Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2S9U3_9STRA1.500e-736.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10464contigD-mesarthrocarpus_Contig10464:180..3356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size591
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_002000.1
Cds size591
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.134736-CDS-D-mesarthrocarpus_Contig10464:179..3411680789184.134736-CDS-D-mesarthrocarpus_Contig10464:179..341Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10464 180..341 -
1680789184.145841-CDS-D-mesarthrocarpus_Contig10464:1015..11201680789184.145841-CDS-D-mesarthrocarpus_Contig10464:1015..1120Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10464 1016..1120 -
1680789184.1564214-CDS-D-mesarthrocarpus_Contig10464:1876..19871680789184.1564214-CDS-D-mesarthrocarpus_Contig10464:1876..1987Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10464 1877..1987 -
1680789184.1675184-CDS-D-mesarthrocarpus_Contig10464:3143..33561680789184.1675184-CDS-D-mesarthrocarpus_Contig10464:3143..3356Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10464 3144..3356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10464.2.1prot_D-mesarthrocarpus_Contig10464.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10464 180..3356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10464.2.1

>prot_D-mesarthrocarpus_Contig10464.2.1 ID=prot_D-mesarthrocarpus_Contig10464.2.1|Name=mRNA_D-mesarthrocarpus_Contig10464.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=197bp
QVIQKLTSSGPNVVERGDVDWDRRVVAMRSSFLGGFLADARGDLDRRHPT
LNVFGARSRDKFFAKLEQGLKVAMSKYRSIDVGNTLFGKVKLDPVCIACD
RPFGPSAQSTKGNPGAASLDPLPPTTLVKDGMAGRPRSPQTNNPFTALGR
ATATATSMPQSPLPVTGRKPAGGTKFVYRGGFKIPRDLTPMPSIDSM
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mRNA from alignment at D-mesarthrocarpus_Contig10464:180..3356-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10464.2.1 ID=mRNA_D-mesarthrocarpus_Contig10464.2.1|Name=mRNA_D-mesarthrocarpus_Contig10464.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3177bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10464:180..3356- (Discosporangium mesarthrocarpum MT17_79)
CAGGTGATCCAGAAGCTGACGTCGTCTGGGCCCAACGTGGTGGAGAGGGG
GGACGTGGACTGGGACCGCCGAGTGGTGGCCATGAGGTCGTCCTTCCTGG
GGGGGTTCCTGGCCGACGCCCGGGGGGACCTGGACAGGCGCCACCCCACC
CTGAACGTCTTTGGGGCCAGGAGTAGGGACAAGTTCTTTGCCAAGCTGGA
GCAGGGGCTCAAGGTGTGGGGTGTGTGGGGGTTGTGGAGGTGTGCGGGTG
TGGGGGGGGATCAGGACCGGCCGTGGGTTGGGGCTTTCATTCTACCGCTT
CATGGGACTTGCCTGTAAAACACAAGGGCCTACATGAGTTGTCTTCAAGG
GTACTCTCTAGTACTGCTTTGGGAGTTGAGTTGTTGAGCATTCAGCAGAG
TGGTGAAACCGACAGTCCCACAAGAAGGAGGTGGAGCTGGTGGCGCGAAA
ATCAATAGCCAATCACACATGCATGTGCATGCAGTAGGGTTCACGGAATG
TCTTTTTGGGGGGGGGGGGATTCTACTTTGCTTGCTATGGCCACGTTGCA
TGCCAACGGTACCTCAGGAGTACTGCCTCTTCTGGAGTGCCCCCCGTCTT
CAACGGGAGGCACTTATTTGTAGTTAAGGAGTTGGCCTAAATTTCGATAT
CAGAGGAACTGCAGCAGCCGAAATACAACTTTCGCCCTAGGAACTTAACA
GAATGGAGAAGAAGCACTACTAGAGCACTACGAACAGTACCTTACTAGGC
TGCGCCGGGAAGGTTTCCAGGCCGGTGGTTGGTGAGGCACGCCGGGGCTG
TCGTTTTGAAGGTAGGCGAGGAAGAAGAGTAAGAAGAAAAAGATTGAGGA
GAAAAAGAAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGTCATGAGGTACGAGGTAGCTCTTTAGAACTAGTGCACTAC
TGCGGTCTCGGAGGGATCCCTGTCCACGGTAGCCAACGAGCGTTTCAAGA
GCTCCTACCCTACAGTAAACGCTTCCAGGCGCTTGGCTGAGGCGGGGCTT
GGGTGGGTGGGTGGGTGGGTGGGTGGGTGGGTGGTATATAACCTGTGGAG
AACATGGATGTCTAACCCAAGCCCCTTCAAAAGACGGAAGGCGTTTTCCT
TTCTTCTTCGAAGAAATACTAATGTTACACGAGTGTCGGAGACGTTTGGG
ATTTCTTGACTGGAAGTTTTGGAGTTTACATAAACAGATTCCGACATTGA
TCACTTTCGGTACTTCAAGGGTTTATTTCAGTGGCTACCGCCGTGGATCA
TCGTCCCCACTGGTACTACAAATATGCCTCAGTGTGACACAACCCCTCGG
CTTGCACCGCCATCATCAGGTGGCCATGTCTAAGTACCGCAGCATTGATG
TGGGCAACACCCTTTTCGGAAAGGTCAAGCTCGACCCCGTCTGCATTGCC
TGCGACCGGCCCTTTGGACCATCCGCTCAAGTGAGACGAGAGCTAAGTTG
GTAGTCCTTTCTTTTCATCCGTGCAGCTCAAACAAGCAAACAGCGCTGTC
ATGTGCAGGAAGGAAGCCGCCTCAGTGGTTGCTTGTTTTTTATTTGTTTG
TTTTTTTCTTTTACACGCTCCGAAGTGCATAGTGCTAGGTGTTCATCTAG
TGGTCCCCTGGGGTACATTTTGGCTTTCTTCCGCCTTTTTTCTTAAAACG
AGCGATTTGCCTATGCCTCCACCTGCATCGTTTCACATCAAACGTCTCTC
ATTCGTGCCTGAGTTACACACCAAGTTCCAGAGTCACAATCCCAAGGTCA
GGGCATGAGAGCAGCAGCAGCCAGTGCCTTCAGTCCATCTAGGAAAATAG
AAAGGCGCTGAAGAGTGGTGCTCCTCAAGCACAGTGACTGGAGGATTCAA
AAATGGCAAATGACTCTACAGTGTAGAGCTCGGTTAGCAACAACTGCTAT
TTGGCCCTCCCTGCTTTGAAACTAGAACAGTAGGGCCCCAAACAGGAAGA
GTCCCTGACAGTGCAGCGCTTCCCTGCTAGAGGTCTTATACCACCATACA
AAACAGAAAACAGTTTGCAGTCAGTGGACCCCTGACCAGAATGCTGCATG
GAGTAGCAGTCCCCACCCCTTGTCCTTAGTTAACCCAATACCAACAGCCA
GCCACACGCCTTGTATGCTTTTACCTTCCCCGGTATGTTCTCCCTCTCCT
CCCCTTCCTCCTCTCCTCTCCTCCTTCTGCTTCTAGTCAACCAAGGGTAA
CCCAGGGGCGGCATCACTGGATCCTCTCCCCCCCACGACATTGGTGAAGG
ACGGCATGGCCGGGCGGCCGCGATCTCCTCAGACCAACAATGTGAGGAAA
AGGGTGACATGCCTCTCACTTGTGTGTGGGTGCATTGTGGCAGCGTTTAT
GCACACCATGGTGTGCCCATTCTGTGTGCTCGGGTAGCTAGGATGCCGTC
ACGATATTTACTCTTTGTTGCTGCACGTCCGAAAGAAAGACCCCTAGCAA
ACTCGTGGGCCTGGGGACCTGGGAGCAAGGGGCCACACGGACGGGGACGA
TGTGGCAGGCACGCCAAAAAAAAGAGACAAGACGCCACCCGTGACCAATC
GCAGCCATGAGCCACGTGAGGTGCTTGCTGCCATCCCGTTGAAATCCCTT
GCTCTGGAGTGATTCAATCCGGAACAGAACACGCCAGACTCGCCCTTGCT
TGGGGGATTGATCGGCCCACTTTGCTTTGTGCTGAAGCGCTTGGAGGTAT
CACCTTGCACGACATGAGGCTCCAGAAGTGTTGGGACCCTTGCTGTGGGC
TTTAGCACACGCGTCAGGCCTGAGGACTCTAGCAGAGATGGCACTCCCCC
TTGCGTCACTCAAGAGAGCCTCAACTCAAAGCGCAGTCAAAGAACAGCCG
TCGAAAACCCGAGAATGCAGAGCGGTCACTCACTGACCCACTTACCTAGG
GAACGACGCCCAACGTCCACGGACGGAAACCCTTCCTCCCCCCACAGGAC
GCCTTGGCTCCGGAGCCATTCACTGCCCTGGGGCGAGCCACCGCTACCGC
CACCTCCATGCCTCAATCCCCCCTTCCTGTGACGGGGAGGAAGCCGGCAG
GGGGGACGAAATTTGTCTACCGTGGCGGCTTCAAGATACCACGGGACCTG
ACTCCCATGCCCAGCATTGACAGCATG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10464:180..3356-

>mRNA_D-mesarthrocarpus_Contig10464.2.1 ID=mRNA_D-mesarthrocarpus_Contig10464.2.1|Name=mRNA_D-mesarthrocarpus_Contig10464.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=591bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10464:180..3356- (Discosporangium mesarthrocarpum MT17_79)
CAGGTGATCCAGAAGCTGACGTCGTCTGGGCCCAACGTGGTGGAGAGGGG
GGACGTGGACTGGGACCGCCGAGTGGTGGCCATGAGGTCGTCCTTCCTGG
GGGGGTTCCTGGCCGACGCCCGGGGGGACCTGGACAGGCGCCACCCCACC
CTGAACGTCTTTGGGGCCAGGAGTAGGGACAAGTTCTTTGCCAAGCTGGA
GCAGGGGCTCAAGGTGGCCATGTCTAAGTACCGCAGCATTGATGTGGGCA
ACACCCTTTTCGGAAAGGTCAAGCTCGACCCCGTCTGCATTGCCTGCGAC
CGGCCCTTTGGACCATCCGCTCAATCAACCAAGGGTAACCCAGGGGCGGC
ATCACTGGATCCTCTCCCCCCCACGACATTGGTGAAGGACGGCATGGCCG
GGCGGCCGCGATCTCCTCAGACCAACAATCCATTCACTGCCCTGGGGCGA
GCCACCGCTACCGCCACCTCCATGCCTCAATCCCCCCTTCCTGTGACGGG
GAGGAAGCCGGCAGGGGGGACGAAATTTGTCTACCGTGGCGGCTTCAAGA
TACCACGGGACCTGACTCCCATGCCCAGCATTGACAGCATG
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