mRNA_D-mesarthrocarpus_Contig1046.8.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1046.8.1
Unique NamemRNA_D-mesarthrocarpus_Contig1046.8.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1046.8.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 7.890e-22
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  545 RSRQGIMDRCVGAVDGLFIRIHKPRVKECPTPARICSGHTKGFGFNLQEICDACYISTAGCISCPGSTNDGTIWNTSEVKSKVKMLLLPDGYYIIGDSAYPPSDRLLTPY 874
            RS  G++  CVGA+DGLF+R+ +P ++    P    SGH KGFG N Q +C+A Y   A  ++CPGS ND T +  S   + +K L  P G YI+GD+AYP SD++L PY
Sbjct:  171 RSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTL--PPGAYIVGDAAYPASDQVLVPY 278          
BLAST of mRNA_D-mesarthrocarpus_Contig1046.8.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 7.210e-21
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 2
Query:  545 RSRQGIMDRCVGAVDGLFIRIHKPRVKECPTPARICSGHTKGFGFNLQEICDACYISTAGCISCPGSTNDGTIWNTSEVKSKVKMLL-LPDGYYIIGDSAYPPSDRLLTPY 874
            RS   ++ +CVGA DGLF+R+ KP  KE   P    +GH KGFG N Q +CDA Y   A  ++CPGS ND T +N S      K+L  LP+G++++GD+AY  S+R++ P+
Sbjct:  164 RSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFD---KLLAGLPEGHFVVGDAAYGASERVVVPF 271          
BLAST of mRNA_D-mesarthrocarpus_Contig1046.8.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.090e-20
Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  560 IMDRCVGAVDGLFIRIHKPRVKECPTPARICSGHTKGFGFNLQEICDACYISTAGCISCPGSTNDGTIWNTSEVKSKVKMLL-LPDGYYIIGDSAYPPSDRLLTPY 874
            ++ +CVGA+DGLF+R+ KP  KE   P    +GH  GFG N Q +CDA Y   A  +SCPGS ND T +N +      K+L  LP+G++++GD+AY  S+R++ P+
Sbjct:   17 VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFD---KLLAGLPEGHFVVGDAAYGASERVVVPF 119          
BLAST of mRNA_D-mesarthrocarpus_Contig1046.8.1 vs. uniprot
Match: A0A6H5KEZ6_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.070e-18
Identity = 54/124 (43.55%), Postives = 69/124 (55.65%), Query Frame = 2
Query:  506 DDRLDHVAAESIARSRQGIMDRCVGAVDGLFIRIHKPRVKECPTPARICSGHTKGFGFNLQEICDACY-ISTAGCISCPGSTNDGTIWNTSEVKSKVKMLLLPDGYYIIGDSAYPPSDRLLTPY 874
            +D     AAE   +S  G     V A DGLF++   P     P      SG   G+G N+Q  CDA Y   +  CI+ PGSTND T WN S++ + VK L  P G+Y++GD+AYP SD LLTPY
Sbjct:  186 EDECTRQAAEWEEKSTGGAFQGVVAAGDGLFVKTLAPTALNTPNVLSYYSGSKCGYGVNVQATCDANYRFCSMSCIA-PGSTNDWTAWNHSDLSTAVKNL--PPGFYMLGDAAYPLSDHLLTPY 306          
BLAST of mRNA_D-mesarthrocarpus_Contig1046.8.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.210e-18
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  545 RSRQGIMDRCVGAVDGLFIRIHKPRVKECPTPARICSGHTKGFGFNLQEICDACYISTAGCISCPGSTNDGTIWNTSEVKSKVKMLLLPDGYYIIGDSAYPPSDRLLTP 871
            RS  G++ RCVGA+DGLF+R+  P +K    P    SGH K FG N Q IC+A Y      ++CPGS ND T +  S   + +  +  P   +I+GD+AYP S+R+L P
Sbjct:  175 RSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKM--PPDCFIVGDAAYPASNRVLVP 281          
BLAST of mRNA_D-mesarthrocarpus_Contig1046.8.1 vs. uniprot
Match: A0A6H5JV75_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV75_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.580e-18
Identity = 54/124 (43.55%), Postives = 69/124 (55.65%), Query Frame = 2
Query:  506 DDRLDHVAAESIARSRQGIMDRCVGAVDGLFIRIHKPRVKECPTPARICSGHTKGFGFNLQEICDACY-ISTAGCISCPGSTNDGTIWNTSEVKSKVKMLLLPDGYYIIGDSAYPPSDRLLTPY 874
            +D     AAE   +S  G     V A DGLF++   P     P      SG   G+G N+Q  CDA Y   +  CI+ PGSTND T WN S++ + VK L  P G+Y++GD+AYP SD LLTPY
Sbjct:  186 EDECTRQAAEWEEKSTGGAFQGVVAAGDGLFVKTLAPTALNTPNVLSYYSGSKCGYGVNVQATCDANYRFCSMSCIA-PGSTNDWTAWNHSDLSTAVKNL--PPGFYMLGDAAYPLSDHLLTPY 306          
BLAST of mRNA_D-mesarthrocarpus_Contig1046.8.1 vs. uniprot
Match: A0A6H5KPH6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH6_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.930e-17
Identity = 53/124 (42.74%), Postives = 68/124 (54.84%), Query Frame = 2
Query:  506 DDRLDHVAAESIARSRQGIMDRCVGAVDGLFIRIHKPRVKECPTPARICSGHTKGFGFNLQEICDACY-ISTAGCISCPGSTNDGTIWNTSEVKSKVKMLLLPDGYYIIGDSAYPPSDRLLTPY 874
            +D     AAE   +S  G     V A DGLF++   P     P      SG   G+G N+Q  CDA Y   +  CI+ PGSTND T WN S++ + VK L  P G+Y++GD+A P SD LLTPY
Sbjct:  151 EDECTRQAAEWEEKSTGGAFQGVVAAGDGLFVKTLAPTALNTPNVLSYYSGSKCGYGVNVQATCDANYRFCSMSCIA-PGSTNDWTAWNHSDLSTAVKNL--PPGFYMLGDAAQPLSDHLLTPY 271          
BLAST of mRNA_D-mesarthrocarpus_Contig1046.8.1 vs. uniprot
Match: G4ZVV4_PHYSP (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZVV4_PHYSP)

HSP 1 Score: 73.2 bits (178), Expect = 1.310e-11
Identity = 42/121 (34.71%), Postives = 62/121 (51.24%), Query Frame = 2
Query:  515 LDHVAAESIARSRQGIMDRCVGAVDGLFIRIHKPRVKECPTPARIC-SGHTKGFGFNLQEICDACYISTAGCISCPGSTNDGTIWNTSEVKSKVKMLLLPDGYYIIGDSAYPPSDRLLTPY 874
            ++  AAE    S +G++D CVG VDG+ +RI  P  K+     R   SGH    G N+Q  CD         ++ PG ++D  +W  +  K    +  L +  Y IGD AY PS+ +LTP+
Sbjct:   93 IECAAAEFAKSSSEGVLDGCVGCVDGMLVRIITPTRKQAGGNVRAYFSGHYHHMGLNIQAACDHQCRFIYFAVAAPGGSSD--LWAFARTKLATYVGNLGNNRYFIGDGAYMPSEHMLTPF 211          
BLAST of mRNA_D-mesarthrocarpus_Contig1046.8.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.240e-10
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  560 IMDRCVGAVDGLFIRIHKPRVKECPTPARICSGHTKGFGFNLQEICDACYISTAGCISCPGSTNDGTIWNTSEVKSKVKMLL-LPDGYYIIGDSAYPPSDRLLTPY 874
            ++ +CVGA+DGLF+R+ KP  KE   P    +GH KGFG N Q +C               S ND T +N S      K+L  LP+G++++G++AY  S+R++ P+
Sbjct:  180 VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ-VC---------------SQNDRTAFNFSGFD---KLLAGLPEGHFVVGNAAYGASERVVVPF 266          
BLAST of mRNA_D-mesarthrocarpus_Contig1046.8.1 vs. uniprot
Match: A0A6H5KLK3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK3_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 7.180e-10
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  680 NLQEICDACY-ISTAGCISCPGSTNDGTIWNTSEVKSKVKMLLLPDGYYIIGDSAYPPSDRLLTPY 874
            N+Q  CDA Y   +  CI+ PGSTND T WN S++ + V+ L  P G+Y++GD+AYP SD LLTPY
Sbjct:    2 NVQATCDANYRFCSMSCIA-PGSTNDWTAWNHSDLSTAVQNL--PPGFYMLGDAAYPLSDHLLTPY 64          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1046.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5K3F2_9PHAE7.890e-2246.36DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE7.210e-2145.05DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE3.090e-2044.34DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KEZ6_9PHAE1.070e-1843.55DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5K6M2_9PHAE2.210e-1843.12DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JV75_9PHAE3.580e-1843.55DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5KPH6_9PHAE3.930e-1742.74DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
G4ZVV4_PHYSP1.310e-1134.71DDE Tnp4 domain-containing protein n=1 Tax=Phytoph... [more]
A0A6H5JJA1_9PHAE3.240e-1037.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLK3_9PHAE7.180e-1053.03DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1046contigD-mesarthrocarpus_Contig1046:21282..22290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI53028
PFAMsDDE_Tnp_4
Model size874
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.01e-19
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Descriptionnuclease activity
Cds size399
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.9805164-UTR-D-mesarthrocarpus_Contig1046:21281..217561680789183.9805164-UTR-D-mesarthrocarpus_Contig1046:21281..21756Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1046 21282..21756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.993664-CDS-D-mesarthrocarpus_Contig1046:21756..219691680789183.993664-CDS-D-mesarthrocarpus_Contig1046:21756..21969Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1046 21757..21969 +
1680789184.003972-CDS-D-mesarthrocarpus_Contig1046:22104..222901680789184.003972-CDS-D-mesarthrocarpus_Contig1046:22104..22290Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1046 22105..22290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1046.8.1prot_D-mesarthrocarpus_Contig1046.8.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1046 21757..22290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1046.8.1

>prot_D-mesarthrocarpus_Contig1046.8.1 ID=prot_D-mesarthrocarpus_Contig1046.8.1|Name=mRNA_D-mesarthrocarpus_Contig1046.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=133bp
MPWSCHRMAVDDRLDHVAAESIARSRQGIMDRCVGAVDGLFIRIHKPRVK
ECPTPARICSGHTKGFGFNLQEICDACYISTAGCISCPGSTNDGTIWNTS
EVKSKVKMLLLPDGYYIIGDSAYPPSDRLLTPY
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mRNA from alignment at D-mesarthrocarpus_Contig1046:21282..22290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1046.8.1 ID=mRNA_D-mesarthrocarpus_Contig1046.8.1|Name=mRNA_D-mesarthrocarpus_Contig1046.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1009bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1046:21282..22290+ (Discosporangium mesarthrocarpum MT17_79)
TTTCAAGCTGCCATCTCGAAAAGATGACTAGTGTGGGTACAACCCAAGGG CGAATGAGATCTCTAAAAGCCCTGAGATTCATGTGGTTGGCTTTGGCCTA CATGGAGTTGTGTTGTCTGGAAGCCAGAGTGTTGGCTGCCGCCCCAAAAA AGCCGAGCCACCGTCTTGTTCACCGACAACGTGCCTCATGGATAGAGCAC ATCCGACCCATGCTGGAAGACCACACCTTCCAATGCCGCTTCAGAATGGA CTACCCCTCCTTCCTTCAAGTTACTCTACGGCCTACTGAGGCCAAAGCCG AAGTCCGATGTTGAGATGGCCAACCTTCGCAACGGGGTAGTGGCTGGAGA GTGGGCACTCGCATCAACCCTTAGGTGGCTCAGTGGAGGGTCTTACTTCA AGATGATGAACGGTCCGACCATTGCCTGCTGCTCGGCCTACTCCGTGCTT CACAGAACACTAGAGGCCATTACTCATGCCCTGGTCTTGCCATCGTATGG CCGTCGACGACAGATTGGATCATGTTGCCGCAGAGTCTATTGCACGCAGC AGGCAAGGCATCATGGACCGCTGCGTAGGAGCGGTAGACGGACTCTTCAT CCGAATCCACAAACCACGCGTCAAGGAATGCCCTACTCCTGCTCGGATCT GCTCAGGACACACGAAGGGATTCGGGTTCAACCTTCAGGTGACTTCAAAA CTTTTTGTGGAGCACCACCTATTAATAGTTGCACCACCCCTTGTCGTTCG TTTGGGGACCATCCCCGACGTCTGCCTGATCACCCTATGTATCACACTCC CGATTTTTGCTGTTCGTGTGAAGGAAATCTGCGATGCATGCTACATTTCC ACAGCGGGGTGCATTTCTTGTCCAGGGAGCACCAATGATGGGACAATCTG GAACACGTCAGAAGTTAAATCCAAGGTGAAGATGCTGTTGCTGCCTGATG GGTACTACATCATCGGTGATTCTGCCTACCCACCCTCAGACCGTCTTCTT ACGCCATAC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1046:21282..22290+

>mRNA_D-mesarthrocarpus_Contig1046.8.1 ID=mRNA_D-mesarthrocarpus_Contig1046.8.1|Name=mRNA_D-mesarthrocarpus_Contig1046.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=399bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1046:21282..22290+ (Discosporangium mesarthrocarpum MT17_79)
ATGCCCTGGTCTTGCCATCGTATGGCCGTCGACGACAGATTGGATCATGT
TGCCGCAGAGTCTATTGCACGCAGCAGGCAAGGCATCATGGACCGCTGCG
TAGGAGCGGTAGACGGACTCTTCATCCGAATCCACAAACCACGCGTCAAG
GAATGCCCTACTCCTGCTCGGATCTGCTCAGGACACACGAAGGGATTCGG
GTTCAACCTTCAGGAAATCTGCGATGCATGCTACATTTCCACAGCGGGGT
GCATTTCTTGTCCAGGGAGCACCAATGATGGGACAATCTGGAACACGTCA
GAAGTTAAATCCAAGGTGAAGATGCTGTTGCTGCCTGATGGGTACTACAT
CATCGGTGATTCTGCCTACCCACCCTCAGACCGTCTTCTTACGCCATAC
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